bool PrefsFile::writePrefVal(const QString &prefId, const QString &newVal) {
if (filePath == NULL)
return false;
QString cnt;
QFileInfo checkFile(filePath);
if (!checkFile.exists()) {
return false;
} else {
QString oldVal = this->fetchPrefVal(prefId);
QFile f(filePath);
if (f.open( QIODevice::ReadWrite )) {
QTextStream rd(&f);
cnt = rd.readAll();
}
f.resize(0); //truncate
f.close();
QString oldL(prefId + " " + oldVal);
QString newL(prefId + " " + newVal);
cnt.replace(oldL, newL);
if (f.open( QIODevice::ReadWrite )) {
QTextStream wr(&f);
wr << cnt;
return true;
}
}
}
bool VMCcuda::run() {
if (UseDrift == "yes")
return runWithDrift();
resetRun();
IndexType block = 0;
IndexType nAcceptTot = 0;
IndexType nRejectTot = 0;
IndexType updatePeriod= (QMCDriverMode[QMC_UPDATE_MODE])
? Period4CheckProperties
: (nBlocks+1)*nSteps;
int nat = W.getTotalNum();
int nw = W.getActiveWalkers();
vector<RealType> LocalEnergy(nw);
vector<PosType> delpos(nw);
vector<PosType> newpos(nw);
vector<ValueType> ratios(nw);
vector<GradType> oldG(nw), newG(nw);
vector<ValueType> oldL(nw), newL(nw);
vector<Walker_t*> accepted(nw);
Matrix<ValueType> lapl(nw, nat);
Matrix<GradType> grad(nw, nat);
double Esum;
// First do warmup steps
for (int step=0; step<myWarmupSteps; step++) {
for(int iat=0; iat<nat; ++iat) {
//create a 3N-Dimensional Gaussian with variance=1
makeGaussRandomWithEngine(delpos,Random);
for(int iw=0; iw<nw; ++iw) {
PosType G = W[iw]->Grad[iat];
newpos[iw]=W[iw]->R[iat] + m_sqrttau*delpos[iw];
ratios[iw] = 1.0;
}
W.proposeMove_GPU(newpos, iat);
Psi.ratio(W,iat,ratios,newG, newL);
accepted.clear();
vector<bool> acc(nw, false);
for(int iw=0; iw<nw; ++iw) {
if(ratios[iw]*ratios[iw] > Random()) {
accepted.push_back(W[iw]);
nAccept++;
W[iw]->R[iat] = newpos[iw];
acc[iw] = true;
}
else
nReject++;
}
W.acceptMove_GPU(acc);
if (accepted.size())
Psi.update(accepted,iat);
}
}
do {
IndexType step = 0;
nAccept = nReject = 0;
Esum = 0.0;
Estimators->startBlock(nSteps);
do
{
++step;
++CurrentStep;
for (int isub=0; isub<nSubSteps; isub++) {
for(int iat=0; iat<nat; ++iat) {
//create a 3N-Dimensional Gaussian with variance=1
makeGaussRandomWithEngine(delpos,Random);
for(int iw=0; iw<nw; ++iw) {
PosType G = W[iw]->Grad[iat];
newpos[iw]=W[iw]->R[iat] + m_sqrttau*delpos[iw];
ratios[iw] = 1.0;
}
W.proposeMove_GPU(newpos, iat);
Psi.ratio(W,iat,ratios,newG, newL);
accepted.clear();
vector<bool> acc(nw, false);
for(int iw=0; iw<nw; ++iw) {
if(ratios[iw]*ratios[iw] > Random()) {
accepted.push_back(W[iw]);
nAccept++;
W[iw]->R[iat] = newpos[iw];
acc[iw] = true;
}
else
nReject++;
}
W.acceptMove_GPU(acc);
if (accepted.size())
Psi.update(accepted,iat);
}
}
Psi.gradLapl(W, grad, lapl);
H.evaluate (W, LocalEnergy);
if (myPeriod4WalkerDump && (CurrentStep % myPeriod4WalkerDump)==0)
W.saveEnsemble();
Estimators->accumulate(W);
} while(step<nSteps);
Psi.recompute(W);
// vector<RealType> logPsi(W.WalkerList.size(), 0.0);
// Psi.evaluateLog(W, logPsi);
double accept_ratio = (double)nAccept/(double)(nAccept+nReject);
Estimators->stopBlock(accept_ratio);
nAcceptTot += nAccept;
nRejectTot += nReject;
++block;
recordBlock(block);
} while(block<nBlocks);
//Mover->stopRun();
//finalize a qmc section
return finalize(block);
}
bool VMCcuda::runWithDrift()
{
resetRun();
IndexType block = 0;
IndexType nAcceptTot = 0;
IndexType nRejectTot = 0;
int nat = W.getTotalNum();
int nw = W.getActiveWalkers();
vector<RealType> LocalEnergy(nw), oldScale(nw), newScale(nw);
vector<PosType> delpos(nw);
vector<PosType> dr(nw);
vector<PosType> newpos(nw);
vector<ValueType> ratios(nw), rplus(nw), rminus(nw);
vector<PosType> oldG(nw), newG(nw);
vector<ValueType> oldL(nw), newL(nw);
vector<Walker_t*> accepted(nw);
Matrix<ValueType> lapl(nw, nat);
Matrix<GradType> grad(nw, nat);
// First, do warmup steps
for (int step=0; step<myWarmupSteps; step++) {
for(int iat=0; iat<nat; iat++) {
Psi.getGradient (W, iat, oldG);
//create a 3N-Dimensional Gaussian with variance=1
makeGaussRandomWithEngine(delpos,Random);
for(int iw=0; iw<nw; iw++) {
oldScale[iw] = getDriftScale(m_tauovermass,oldG[iw]);
dr[iw] = (m_sqrttau*delpos[iw]) + (oldScale[iw]*oldG[iw]);
newpos[iw]=W[iw]->R[iat] + dr[iw];
ratios[iw] = 1.0;
}
W.proposeMove_GPU(newpos, iat);
Psi.ratio(W,iat,ratios,newG, newL);
accepted.clear();
vector<bool> acc(nw, false);
for(int iw=0; iw<nw; ++iw) {
PosType drOld =
newpos[iw] - (W[iw]->R[iat] + oldScale[iw]*oldG[iw]);
RealType logGf = -m_oneover2tau * dot(drOld, drOld);
newScale[iw] = getDriftScale(m_tauovermass,newG[iw]);
PosType drNew =
(newpos[iw] + newScale[iw]*newG[iw]) - W[iw]->R[iat];
RealType logGb = -m_oneover2tau * dot(drNew, drNew);
RealType x = logGb - logGf;
RealType prob = ratios[iw]*ratios[iw]*std::exp(x);
if(Random() < prob) {
accepted.push_back(W[iw]);
nAccept++;
W[iw]->R[iat] = newpos[iw];
acc[iw] = true;
}
else
nReject++;
}
W.acceptMove_GPU(acc);
if (accepted.size())
Psi.update(accepted,iat);
}
}
// Now do data collection steps
do {
IndexType step = 0;
nAccept = nReject = 0;
Estimators->startBlock(nSteps);
do {
step++;
CurrentStep++;
for (int isub=0; isub<nSubSteps; isub++) {
for(int iat=0; iat<nat; iat++) {
Psi.getGradient (W, iat, oldG);
//create a 3N-Dimensional Gaussian with variance=1
makeGaussRandomWithEngine(delpos,Random);
for(int iw=0; iw<nw; iw++) {
oldScale[iw] = getDriftScale(m_tauovermass,oldG[iw]);
dr[iw] = (m_sqrttau*delpos[iw]) + (oldScale[iw]*oldG[iw]);
newpos[iw]=W[iw]->R[iat] + dr[iw];
ratios[iw] = 1.0;
}
W.proposeMove_GPU(newpos, iat);
Psi.ratio(W,iat,ratios,newG, newL);
accepted.clear();
vector<bool> acc(nw, false);
for(int iw=0; iw<nw; ++iw) {
PosType drOld =
newpos[iw] - (W[iw]->R[iat] + oldScale[iw]*oldG[iw]);
// if (dot(drOld, drOld) > 25.0)
// cerr << "Large drift encountered! Old drift = " << drOld << endl;
RealType logGf = -m_oneover2tau * dot(drOld, drOld);
newScale[iw] = getDriftScale(m_tauovermass,newG[iw]);
PosType drNew =
(newpos[iw] + newScale[iw]*newG[iw]) - W[iw]->R[iat];
// if (dot(drNew, drNew) > 25.0)
// cerr << "Large drift encountered! Drift = " << drNew << endl;
RealType logGb = -m_oneover2tau * dot(drNew, drNew);
RealType x = logGb - logGf;
RealType prob = ratios[iw]*ratios[iw]*std::exp(x);
if(Random() < prob) {
accepted.push_back(W[iw]);
nAccept++;
W[iw]->R[iat] = newpos[iw];
acc[iw] = true;
}
else
nReject++;
}
W.acceptMove_GPU(acc);
if (accepted.size())
Psi.update(accepted,iat);
}
// cerr << "Rank = " << myComm->rank() <<
// " CurrentStep = " << CurrentStep << " isub = " << isub << endl;
}
Psi.gradLapl(W, grad, lapl);
H.evaluate (W, LocalEnergy);
if (myPeriod4WalkerDump && (CurrentStep % myPeriod4WalkerDump)==0)
W.saveEnsemble();
Estimators->accumulate(W);
} while(step<nSteps);
Psi.recompute(W);
double accept_ratio = (double)nAccept/(double)(nAccept+nReject);
Estimators->stopBlock(accept_ratio);
nAcceptTot += nAccept;
nRejectTot += nReject;
++block;
recordBlock(block);
} while(block<nBlocks);
//finalize a qmc section
if (!myComm->rank())
gpu::cuda_memory_manager.report();
return finalize(block);
}
bool DMCcuda::run()
{
bool NLmove = NonLocalMove == "yes";
bool scaleweight = ScaleWeight == "yes";
if (NLmove)
app_log() << " Using Casula nonlocal moves in DMCcuda.\n";
if (scaleweight)
app_log() << " Scaling weight per Umrigar/Nightengale.\n";
resetRun();
Mover->MaxAge = 1;
IndexType block = 0;
IndexType nAcceptTot = 0;
IndexType nRejectTot = 0;
int nat = W.getTotalNum();
int nw = W.getActiveWalkers();
vector<RealType> LocalEnergy(nw), LocalEnergyOld(nw),
oldScale(nw), newScale(nw);
vector<PosType> delpos(nw);
vector<PosType> dr(nw);
vector<PosType> newpos(nw);
vector<ValueType> ratios(nw), rplus(nw), rminus(nw), R2prop(nw), R2acc(nw);
vector<PosType> oldG(nw), newG(nw);
vector<ValueType> oldL(nw), newL(nw);
vector<Walker_t*> accepted(nw);
Matrix<ValueType> lapl(nw, nat);
Matrix<GradType> grad(nw, nat);
vector<ValueType> V2(nw), V2bar(nw);
vector<vector<NonLocalData> > Txy(nw);
for (int iw=0; iw<nw; iw++)
W[iw]->Weight = 1.0;
do {
IndexType step = 0;
nAccept = nReject = 0;
Estimators->startBlock(nSteps);
do {
step++;
CurrentStep++;
nw = W.getActiveWalkers();
ResizeTimer.start();
LocalEnergy.resize(nw); oldScale.resize(nw);
newScale.resize(nw); delpos.resize(nw);
dr.resize(nw); newpos.resize(nw);
ratios.resize(nw); rplus.resize(nw);
rminus.resize(nw); oldG.resize(nw);
newG.resize(nw); oldL.resize(nw);
newL.resize(nw); accepted.resize(nw);
lapl.resize(nw, nat); grad.resize(nw, nat);
R2prop.resize(nw,0.0); R2acc.resize(nw,0.0);
V2.resize(nw,0.0); V2bar.resize(nw,0.0);
W.updateLists_GPU();
ResizeTimer.stop();
if (NLmove) {
Txy.resize(nw);
for (int iw=0; iw<nw; iw++) {
Txy[iw].clear();
Txy[iw].push_back(NonLocalData(-1, 1.0, PosType()));
}
}
for (int iw=0; iw<nw; iw++)
W[iw]->Age++;
DriftDiffuseTimer.start();
for(int iat=0; iat<nat; iat++) {
Psi.getGradient (W, iat, oldG);
//create a 3N-Dimensional Gaussian with variance=1
makeGaussRandomWithEngine(delpos,Random);
for(int iw=0; iw<nw; iw++) {
delpos[iw] *= m_sqrttau;
oldScale[iw] = getDriftScale(m_tauovermass,oldG[iw]);
dr[iw] = delpos[iw] + (oldScale[iw]*oldG[iw]);
newpos[iw]=W[iw]->R[iat] + dr[iw];
ratios[iw] = 1.0;
R2prop[iw] += dot(delpos[iw], delpos[iw]);
}
W.proposeMove_GPU(newpos, iat);
Psi.ratio(W,iat,ratios,newG, newL);
accepted.clear();
vector<bool> acc(nw, false);
for(int iw=0; iw<nw; ++iw) {
PosType drOld =
newpos[iw] - (W[iw]->R[iat] + oldScale[iw]*oldG[iw]);
RealType logGf = -m_oneover2tau * dot(drOld, drOld);
newScale[iw] = getDriftScale(m_tauovermass,newG[iw]);
PosType drNew =
(newpos[iw] + newScale[iw]*newG[iw]) - W[iw]->R[iat];
RealType logGb = -m_oneover2tau * dot(drNew, drNew);
RealType x = logGb - logGf;
RealType prob = ratios[iw]*ratios[iw]*std::exp(x);
if(Random() < prob && ratios[iw] > 0.0) {
accepted.push_back(W[iw]);
nAccept++;
W[iw]->R[iat] = newpos[iw];
W[iw]->Age = 0;
acc[iw] = true;
R2acc[iw] += dot(delpos[iw], delpos[iw]);
V2[iw] += m_tauovermass * m_tauovermass * dot(newG[iw],newG[iw]);
V2bar[iw] += newScale[iw] * newScale[iw] * dot(newG[iw],newG[iw]);
}
else {
nReject++;
V2[iw] += m_tauovermass * m_tauovermass * dot(oldG[iw],oldG[iw]);
V2bar[iw] += oldScale[iw] * oldScale[iw] * dot(oldG[iw],oldG[iw]);
}
}
W.acceptMove_GPU(acc);
if (accepted.size())
Psi.update(accepted,iat);
}
DriftDiffuseTimer.stop();
// Psi.recompute(W, false);
Psi.gradLapl(W, grad, lapl);
HTimer.start();
if (NLmove) H.evaluate (W, LocalEnergy, Txy);
else H.evaluate (W, LocalEnergy);
HTimer.stop();
// for (int iw=0; iw<nw; iw++) {
// branchEngine->clampEnergy(LocalEnergy[iw]);
// W[iw]->getPropertyBase()[LOCALENERGY] = LocalEnergy[iw];
// }
if (CurrentStep == 1)
LocalEnergyOld = LocalEnergy;
if (NLmove) {
// Now, attempt nonlocal move
accepted.clear();
vector<int> iatList;
vector<PosType> accPos;
for (int iw=0; iw<nw; iw++) {
/// HACK HACK HACK
// if (LocalEnergy[iw] < -2300.0) {
// cerr << "Walker " << iw << " has energy "
// << LocalEnergy[iw] << endl;;
// double maxWeight = 0.0;
// int elMax = -1;
// PosType posMax;
// for (int j=1; j<Txy[iw].size(); j++)
// if (std::fabs(Txy[iw][j].Weight) > std::fabs(maxWeight)) {
// maxWeight = Txy[iw][j].Weight;
// elMax = Txy[iw][j].PID;
// posMax = W[iw]->R[elMax] + Txy[iw][j].Delta;
// }
// cerr << "Maximum weight is " << maxWeight << " for electron "
// << elMax << " at position " << posMax << endl;
// PosType unit = W.Lattice.toUnit(posMax);
// unit[0] -= round(unit[0]);
// unit[1] -= round(unit[1]);
// unit[2] -= round(unit[2]);
// cerr << "Reduced position = " << unit << endl;
// }
int ibar = NLop.selectMove(Random(), Txy[iw]);
if (ibar) {
accepted.push_back(W[iw]);
int iat = Txy[iw][ibar].PID;
iatList.push_back(iat);
accPos.push_back(W[iw]->R[iat] + Txy[iw][ibar].Delta);
}
}
if (accepted.size()) {
Psi.ratio(accepted,iatList, accPos, ratios, newG, newL);
Psi.update(accepted,iatList);
for (int i=0; i<accepted.size(); i++)
accepted[i]->R[iatList[i]] = accPos[i];
W.NLMove_GPU (accepted, accPos, iatList);
// HACK HACK HACK
// Recompute the kinetic energy
// Psi.gradLapl(W, grad, lapl);
// H.evaluate (W, LocalEnergy);
//W.copyWalkersToGPU();
}
}
// Now branch
BranchTimer.start();
for (int iw=0; iw<nw; iw++) {
RealType v2=0.0, v2bar=0.0;
for(int iat=0; iat<nat; iat++) {
v2 += dot(W.G[iat],W.G[iat]);
RealType newscale = getDriftScale(m_tauovermass,newG[iw]);
v2 += m_tauovermass * m_tauovermass * dot(newG[iw],newG[iw]);
v2bar += newscale * newscale * dot(newG[iw],newG[iw]);
}
//RealType scNew = std::sqrt(V2bar[iw] / V2[iw]);
RealType scNew = std::sqrt(v2bar/v2);
RealType scOld = (CurrentStep == 1) ? scNew : W[iw]->getPropertyBase()[DRIFTSCALE];
W[iw]->getPropertyBase()[DRIFTSCALE] = scNew;
// fprintf (stderr, "iw = %d scNew = %1.8f scOld = %1.8f\n", iw, scNew, scOld);
RealType tauRatio = R2acc[iw] / R2prop[iw];
if (tauRatio < 0.5)
cerr << " tauRatio = " << tauRatio << endl;
RealType taueff = m_tauovermass * tauRatio;
if (scaleweight)
W[iw]->Weight *= branchEngine->branchWeightTau
(LocalEnergy[iw], LocalEnergyOld[iw], scNew, scOld, taueff);
else
W[iw]->Weight *= branchEngine->branchWeight
(LocalEnergy[iw], LocalEnergyOld[iw]);
W[iw]->getPropertyBase()[R2ACCEPTED] = R2acc[iw];
W[iw]->getPropertyBase()[R2PROPOSED] = R2prop[iw];
}
Mover->setMultiplicity(W.begin(), W.end());
branchEngine->branch(CurrentStep,W);
nw = W.getActiveWalkers();
LocalEnergyOld.resize(nw);
for (int iw=0; iw<nw; iw++)
LocalEnergyOld[iw] = W[iw]->getPropertyBase()[LOCALENERGY];
BranchTimer.stop();
} while(step<nSteps);
Psi.recompute(W, true);
double accept_ratio = (double)nAccept/(double)(nAccept+nReject);
Estimators->stopBlock(accept_ratio);
nAcceptTot += nAccept;
nRejectTot += nReject;
++block;
recordBlock(block);
} while(block<nBlocks);
//finalize a qmc section
return finalize(block);
}
bool DMCcuda::runWithNonlocal()
{
resetRun();
Mover->MaxAge = 1;
IndexType block = 0;
IndexType nAcceptTot = 0;
IndexType nRejectTot = 0;
int nat = W.getTotalNum();
int nw = W.getActiveWalkers();
vector<RealType> LocalEnergy(nw), LocalEnergyOld(nw),
oldScale(nw), newScale(nw);
vector<PosType> delpos(nw);
vector<PosType> dr(nw);
vector<PosType> newpos(nw);
vector<ValueType> ratios(nw), rplus(nw), rminus(nw), R2prop(nw), R2acc(nw);
vector<PosType> oldG(nw), newG(nw);
vector<ValueType> oldL(nw), newL(nw);
vector<Walker_t*> accepted(nw);
Matrix<ValueType> lapl(nw, nat);
Matrix<GradType> grad(nw, nat);
vector<vector<NonLocalData> > Txy(nw);
for (int iw=0; iw<nw; iw++)
W[iw]->Weight = 1.0;
do {
IndexType step = 0;
nAccept = nReject = 0;
Estimators->startBlock(nSteps);
do {
step++;
CurrentStep++;
nw = W.getActiveWalkers();
LocalEnergy.resize(nw); oldScale.resize(nw);
newScale.resize(nw); delpos.resize(nw);
dr.resize(nw); newpos.resize(nw);
ratios.resize(nw); rplus.resize(nw);
rminus.resize(nw); oldG.resize(nw);
newG.resize(nw); oldL.resize(nw);
newL.resize(nw); accepted.resize(nw);
lapl.resize(nw, nat); grad.resize(nw, nat);
R2prop.resize(nw,0.0); R2acc.resize(nw,0.0);
W.updateLists_GPU();
Txy.resize(nw);
for (int iw=0; iw<nw; iw++) {
Txy[iw].clear();
Txy[iw].push_back(NonLocalData(-1, 1.0, PosType()));
W[iw]->Age++;
}
for(int iat=0; iat<nat; iat++) {
Psi.getGradient (W, iat, oldG);
//create a 3N-Dimensional Gaussian with variance=1
makeGaussRandomWithEngine(delpos,Random);
for(int iw=0; iw<nw; iw++) {
delpos[iw] *= m_sqrttau;
oldScale[iw] = getDriftScale(m_tauovermass,oldG[iw]);
dr[iw] = delpos[iw] + (oldScale[iw]*oldG[iw]);
newpos[iw]=W[iw]->R[iat] + dr[iw];
ratios[iw] = 1.0;
R2prop[iw] += dot(delpos[iw], delpos[iw]);
}
W.proposeMove_GPU(newpos, iat);
Psi.ratio(W,iat,ratios,newG, newL);
accepted.clear();
vector<bool> acc(nw, false);
for(int iw=0; iw<nw; ++iw) {
PosType drOld =
newpos[iw] - (W[iw]->R[iat] + oldScale[iw]*oldG[iw]);
RealType logGf = -m_oneover2tau * dot(drOld, drOld);
newScale[iw] = getDriftScale(m_tauovermass,newG[iw]);
PosType drNew =
(newpos[iw] + newScale[iw]*newG[iw]) - W[iw]->R[iat];
RealType logGb = -m_oneover2tau * dot(drNew, drNew);
RealType x = logGb - logGf;
RealType prob = ratios[iw]*ratios[iw]*std::exp(x);
if(Random() < prob && ratios[iw] > 0.0) {
accepted.push_back(W[iw]);
nAccept++;
W[iw]->R[iat] = newpos[iw];
W[iw]->Age = 0;
acc[iw] = true;
R2acc[iw] += dot(delpos[iw], delpos[iw]);
}
else
nReject++;
}
W.acceptMove_GPU(acc);
if (accepted.size())
Psi.update(accepted,iat);
}
for (int iw=0; iw < nw; iw++)
if (W[iw]->Age)
cerr << "Encountered stuck walker with iw=" << iw << endl;
// Psi.recompute(W, false);
Psi.gradLapl(W, grad, lapl);
H.evaluate (W, LocalEnergy, Txy);
if (CurrentStep == 1)
LocalEnergyOld = LocalEnergy;
// Now, attempt nonlocal move
accepted.clear();
vector<int> iatList;
vector<PosType> accPos;
for (int iw=0; iw<nw; iw++) {
int ibar = NLop.selectMove(Random(), Txy[iw]);
// cerr << "Txy[iw].size() = " << Txy[iw].size() << endl;
if (ibar) {
accepted.push_back(W[iw]);
int iat = Txy[iw][ibar].PID;
iatList.push_back(iat);
accPos.push_back(W[iw]->R[iat] + Txy[iw][ibar].Delta);
}
}
if (accepted.size()) {
// W.proposeMove_GPU(newpos, iatList);
Psi.ratio(accepted,iatList, accPos, ratios, newG, newL);
Psi.update(accepted,iatList);
for (int i=0; i<accepted.size(); i++)
accepted[i]->R[iatList[i]] = accPos[i];
W.copyWalkersToGPU();
}
// Now branch
for (int iw=0; iw<nw; iw++) {
W[iw]->Weight *= branchEngine->branchWeight(LocalEnergy[iw], LocalEnergyOld[iw]);
W[iw]->getPropertyBase()[R2ACCEPTED] = R2acc[iw];
W[iw]->getPropertyBase()[R2PROPOSED] = R2prop[iw];
}
Mover->setMultiplicity(W.begin(), W.end());
branchEngine->branch(CurrentStep,W);
nw = W.getActiveWalkers();
LocalEnergyOld.resize(nw);
for (int iw=0; iw<nw; iw++)
LocalEnergyOld[iw] = W[iw]->getPropertyBase()[LOCALENERGY];
} while(step<nSteps);
Psi.recompute(W, true);
double accept_ratio = (double)nAccept/(double)(nAccept+nReject);
Estimators->stopBlock(accept_ratio);
nAcceptTot += nAccept;
nRejectTot += nReject;
++block;
recordBlock(block);
} while(block<nBlocks);
//finalize a qmc section
return finalize(block);
}
CrystVector_long DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda(const REAL maxSTOL)
{
TAU_PROFILE("DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda()","void ()",TAU_DEFAULT);
VFN_DEBUG_ENTRY("DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda()",5)
// ScatteringData::SortReflectionBySinThetaOverLambda only sorts H,K,L and multiplicity.
CrystVector_long index=this->ScatteringData::SortReflectionBySinThetaOverLambda(maxSTOL);
if(mObsIntensity.numElements()==mNbRefl)
{
CrystVector_REAL tmpObs,tmpSigma,tmpWeight;
tmpObs=mObsIntensity;
tmpSigma=mObsSigma;
tmpWeight=mWeight;
for(long i=0;i<mNbRefl;i++)
{
mObsIntensity(i)=tmpObs(index(i));
mObsSigma(i)=tmpSigma(index(i));
mWeight(i)=tmpWeight(index(i));
}
// Keep a copy as squared F(hkl), to enable fourier maps
// :TODO: stop using mObsIntensity and just keep mFhklObsSq ?
mFhklObsSq=mObsIntensity;
mClockFhklObsSq.Click();
if(mGroupOption.GetChoice()==2)
{
CrystVector_long tmp;//,oldgroup(mNbGroup);;
tmp=mGroupIndex;
for(long i=0;i<mNbRefl;i++) mGroupIndex(i)=tmp(index(i));
/*
for(long i=0;i<mNbRefl;i++)
cout<<mIntH(i)<<" "<<mIntK(i)<<" "<<mIntL(i)<<" "
<<mObsIntensity(i)<<" "<<mObsSigma(i)<<" "<<mWeight(i)<< ":"<<mGroupIndex(i)<<endl;
*/
// Now re-index the groups of reflections in
// ascending order
{
index.resize(mNbGroup);
index=-1;
long group=0;
CrystVector_REAL oldGroupIobs, oldGroupWeight,oldGroupSigma;
oldGroupIobs =mGroupIobs;
oldGroupWeight=mGroupWeight;
oldGroupSigma=mGroupSigma;
for(long i=0;i<mNbRefl;i++)
{
if(index(mGroupIndex(i))==-1)// first reflection of a group ?
{
mGroupIobs(group)=oldGroupIobs(mGroupIndex(i));
mGroupSigma(group)=oldGroupSigma(mGroupIndex(i));
mGroupWeight(group)=oldGroupWeight(mGroupIndex(i));
//oldgroup(group)=mGroupIndex(i);
index(mGroupIndex(i))=group++;
}
mGroupIndex(i)=index(mGroupIndex(i));
}
}
/*
cout<<mIntH.numElements()<<","
<<mIntK.numElements()<<","
<<mIntL.numElements()<<","
<<oldgroup.numElements()<<","<<mGroupIndex.numElements()<<endl;
for(long i=0;i<mNbRefl;i++)
cout<<mIntH(i)<<" "<<mIntK(i)<<" "<<mIntL(i)<<endl
<<" :"<<oldgroup(mGroupIndex(i))<<"->"<<mGroupIndex(i)<<endl;
*/
// Now re-group the reflections
index=SortSubs(mGroupIndex);
{
CrystVector_long oldH,oldK,oldL,oldMult;
oldH=mH;
oldK=mK;
oldL=mL;
oldMult=mMultiplicity;
tmpObs=mObsIntensity;
tmpSigma=mObsSigma;
tmpWeight=mWeight;
for(long i=0;i<mNbRefl;i++)
{
const long subs=index(i);
mH(i)=oldH(subs);
mK(i)=oldK(subs);
mL(i)=oldL(subs);
mMultiplicity(i)=oldMult(subs);
mObsIntensity(i)=tmpObs(subs);
mObsSigma(i)=tmpSigma(subs);
mWeight(i)=tmpWeight(subs);
}
mClockHKL.Click();
this->PrepareHKLarrays();
this->CalcSinThetaLambda();
}
// re-write mGroupIndex so that it marks the
// last reflection of each group.
index=mGroupIndex;
mGroupIndex.resize(mNbGroup);
long group=0;
for(long i=0;i<mNbRefl;i++)
if(index(i)!=group)
mGroupIndex(group++)=i;
mGroupIndex(mNbGroup-1)=mNbRefl;
}
}
else
{// if there are no observed values, enter dummy ones
mObsIntensity.resize(mNbRefl);
mObsSigma.resize(mNbRefl);
mWeight.resize(mNbRefl);
mObsIntensity=100.;
mObsSigma=1.;
mWeight=1.;
mFhklObsSq.resize(0);
mClockFhklObsSq.Click();
}
VFN_DEBUG_EXIT("DiffractionDataSingleCrystal::SortReflectionBySinThetaOverLambda()",5)
return index;
}
