int orte_read_hnp_contact_file(char *filename, orte_hnp_contact_t *hnp, bool connect)
{
char *hnp_uri, *pidstr;
FILE *fp;
int rc;
fp = fopen(filename, "r");
if (NULL == fp) { /* failed on first read - wait and try again */
fp = fopen(filename, "r");
if (NULL == fp) { /* failed twice - give up */
return ORTE_ERR_FILE_OPEN_FAILURE;
}
}
hnp_uri = orte_getline(fp);
if (NULL == hnp_uri) {
ORTE_ERROR_LOG(ORTE_ERR_FILE_READ_FAILURE);
fclose(fp);
return ORTE_ERR_FILE_READ_FAILURE;
}
/* get the pid */
pidstr = orte_getline(fp);
if (NULL == pidstr) {
ORTE_ERROR_LOG(ORTE_ERR_FILE_READ_FAILURE);
fclose(fp);
free(hnp_uri);
return ORTE_ERR_FILE_READ_FAILURE;
}
hnp->pid = (pid_t)atol(pidstr);
free(pidstr);
fclose(fp);
if (connect) {
/* set the contact info into the comm hash tables*/
orte_rml.set_contact_info(hnp_uri);
/* extract the HNP's name and store it */
if (ORTE_SUCCESS != (rc = orte_rml_base_parse_uris(hnp_uri, &hnp->name, NULL))) {
ORTE_ERROR_LOG(rc);
free(hnp_uri);
return rc;
}
/* set the route to be direct */
if (ORTE_SUCCESS != (rc = orte_routed.update_route(&hnp->name, &hnp->name))) {
ORTE_ERROR_LOG(rc);
free(hnp_uri);
return rc;
}
}
hnp->rml_uri = hnp_uri;
return ORTE_SUCCESS;
}
/*
* Sequentially map the ranks according to the placement in the
* specified hostfile
*/
static int orte_rmaps_seq_map(orte_job_t *jdata)
{
orte_job_map_t *map;
orte_app_context_t *app;
int i, n;
orte_std_cntr_t j;
opal_list_item_t *item;
orte_node_t *node, *nd;
seq_node_t *sq, *save=NULL, *seq;;
orte_vpid_t vpid;
orte_std_cntr_t num_nodes;
int rc;
opal_list_t default_seq_list;
opal_list_t node_list, *seq_list, sq_list;
orte_proc_t *proc;
mca_base_component_t *c = &mca_rmaps_seq_component.base_version;
char *hosts = NULL, *sep, *eptr;
FILE *fp;
opal_hwloc_resource_type_t rtype;
OPAL_OUTPUT_VERBOSE((1, orte_rmaps_base_framework.framework_output,
"%s rmaps:seq called on job %s",
ORTE_NAME_PRINT(ORTE_PROC_MY_NAME),
ORTE_JOBID_PRINT(jdata->jobid)));
/* this mapper can only handle initial launch
* when seq mapping is desired - allow
* restarting of failed apps
*/
if (ORTE_FLAG_TEST(jdata, ORTE_JOB_FLAG_RESTART)) {
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: job %s is being restarted - seq cannot map",
ORTE_JOBID_PRINT(jdata->jobid));
return ORTE_ERR_TAKE_NEXT_OPTION;
}
if (NULL != jdata->map->req_mapper) {
if (0 != strcasecmp(jdata->map->req_mapper, c->mca_component_name)) {
/* a mapper has been specified, and it isn't me */
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: job %s not using sequential mapper",
ORTE_JOBID_PRINT(jdata->jobid));
return ORTE_ERR_TAKE_NEXT_OPTION;
}
/* we need to process it */
goto process;
}
if (ORTE_MAPPING_SEQ != ORTE_GET_MAPPING_POLICY(jdata->map->mapping)) {
/* I don't know how to do these - defer */
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: job %s not using seq mapper",
ORTE_JOBID_PRINT(jdata->jobid));
return ORTE_ERR_TAKE_NEXT_OPTION;
}
process:
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: mapping job %s",
ORTE_JOBID_PRINT(jdata->jobid));
/* flag that I did the mapping */
if (NULL != jdata->map->last_mapper) {
free(jdata->map->last_mapper);
}
jdata->map->last_mapper = strdup(c->mca_component_name);
/* convenience def */
map = jdata->map;
/* if there is a default hostfile, go and get its ordered list of nodes */
OBJ_CONSTRUCT(&default_seq_list, opal_list_t);
if (NULL != orte_default_hostfile) {
char *hstname = NULL;
/* open the file */
fp = fopen(orte_default_hostfile, "r");
if (NULL == fp) {
ORTE_ERROR_LOG(ORTE_ERR_NOT_FOUND);
rc = ORTE_ERR_NOT_FOUND;
goto error;
}
while (NULL != (hstname = orte_getline(fp))) {
if (0 == strlen(hstname)) {
free(hstname);
/* blank line - ignore */
continue;
}
if( '#' == hstname[0] ) {
free(hstname);
/* Comment line - ignore */
continue;
}
sq = OBJ_NEW(seq_node_t);
if (NULL != (sep = strchr(hstname, ' '))) {
*sep = '\0';
sep++;
/* remove any trailing space */
eptr = sep + strlen(sep) - 1;
while (eptr > sep && isspace(*eptr)) {
eptr--;
}
*(eptr+1) = 0;
sq->cpuset = strdup(sep);
}
// Strip off the FQDN if present, ignore IP addresses
if( !orte_keep_fqdn_hostnames && !opal_net_isaddr(hstname) ) {
char *ptr;
if (NULL != (ptr = strchr(hstname, '.'))) {
*ptr = '\0';
}
}
sq->hostname = hstname;
opal_list_append(&default_seq_list, &sq->super);
}
fclose(fp);
}
/* start at the beginning... */
vpid = 0;
jdata->num_procs = 0;
if (0 < opal_list_get_size(&default_seq_list)) {
save = (seq_node_t*)opal_list_get_first(&default_seq_list);
}
/* default to LOGICAL processors */
if (orte_get_attribute(&jdata->attributes, ORTE_JOB_PHYSICAL_CPUIDS, NULL, OPAL_BOOL)) {
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: using PHYSICAL processors");
rtype = OPAL_HWLOC_PHYSICAL;
} else {
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: using LOGICAL processors");
rtype = OPAL_HWLOC_LOGICAL;
}
/* initialize all the nodes as not included in this job map */
for (j=0; j < orte_node_pool->size; j++) {
if (NULL != (node = (orte_node_t*)opal_pointer_array_get_item(orte_node_pool, j))) {
ORTE_FLAG_UNSET(node, ORTE_NODE_FLAG_MAPPED);
}
}
/* cycle through the app_contexts, mapping them sequentially */
for(i=0; i < jdata->apps->size; i++) {
if (NULL == (app = (orte_app_context_t*)opal_pointer_array_get_item(jdata->apps, i))) {
continue;
}
/* dash-host trumps hostfile */
if (orte_get_attribute(&app->attributes, ORTE_APP_DASH_HOST, (void**)&hosts, OPAL_STRING)) {
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: using dash-host nodes on app %s", app->app);
OBJ_CONSTRUCT(&node_list, opal_list_t);
/* dash host entries cannot specify cpusets, so used the std function to retrieve the list */
if (ORTE_SUCCESS != (rc = orte_util_get_ordered_dash_host_list(&node_list, hosts))) {
ORTE_ERROR_LOG(rc);
free(hosts);
goto error;
}
free(hosts);
/* transfer the list to a seq_node_t list */
OBJ_CONSTRUCT(&sq_list, opal_list_t);
while (NULL != (nd = (orte_node_t*)opal_list_remove_first(&node_list))) {
sq = OBJ_NEW(seq_node_t);
sq->hostname = strdup(nd->name);
opal_list_append(&sq_list, &sq->super);
OBJ_RELEASE(nd);
}
OBJ_DESTRUCT(&node_list);
seq_list = &sq_list;
} else if (orte_get_attribute(&app->attributes, ORTE_APP_HOSTFILE, (void**)&hosts, OPAL_STRING)) {
char *hstname;
if (NULL == hosts) {
rc = ORTE_ERR_NOT_FOUND;
goto error;
}
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: using hostfile %s nodes on app %s", hosts, app->app);
OBJ_CONSTRUCT(&sq_list, opal_list_t);
/* open the file */
fp = fopen(hosts, "r");
if (NULL == fp) {
ORTE_ERROR_LOG(ORTE_ERR_NOT_FOUND);
rc = ORTE_ERR_NOT_FOUND;
OBJ_DESTRUCT(&sq_list);
goto error;
}
while (NULL != (hstname = orte_getline(fp))) {
if (0 == strlen(hstname)) {
free(hstname);
/* blank line - ignore */
continue;
}
if( '#' == hstname[0] ) {
free(hstname);
/* Comment line - ignore */
continue;
}
sq = OBJ_NEW(seq_node_t);
if (NULL != (sep = strchr(hstname, ' '))) {
*sep = '\0';
sep++;
/* remove any trailing space */
eptr = sep + strlen(sep) - 1;
while (eptr > sep && isspace(*eptr)) {
eptr--;
}
*(eptr+1) = 0;
sq->cpuset = strdup(sep);
}
// Strip off the FQDN if present, ignore IP addresses
if( !orte_keep_fqdn_hostnames && !opal_net_isaddr(hstname) ) {
char *ptr;
if (NULL != (ptr = strchr(hstname, '.'))) {
(*ptr) = '\0';
}
}
sq->hostname = hstname;
opal_list_append(&sq_list, &sq->super);
}
fclose(fp);
free(hosts);
seq_list = &sq_list;
} else if (0 < opal_list_get_size(&default_seq_list)) {
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: using default hostfile nodes on app %s", app->app);
seq_list = &default_seq_list;
} else {
/* can't do anything - no nodes available! */
orte_show_help("help-orte-rmaps-base.txt",
"orte-rmaps-base:no-available-resources",
true);
return ORTE_ERR_SILENT;
}
/* check for nolocal and remove the head node, if required */
if (map->mapping & ORTE_MAPPING_NO_USE_LOCAL) {
for (item = opal_list_get_first(seq_list);
item != opal_list_get_end(seq_list);
item = opal_list_get_next(item) ) {
seq = (seq_node_t*)item;
/* need to check ifislocal because the name in the
* hostfile may not have been FQDN, while name returned
* by gethostname may have been (or vice versa)
*/
if (orte_ifislocal(seq->hostname)) {
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: removing head node %s", seq->hostname);
opal_list_remove_item(seq_list, item);
OBJ_RELEASE(item); /* "un-retain" it */
}
}
}
if (NULL == seq_list || 0 == (num_nodes = (orte_std_cntr_t)opal_list_get_size(seq_list))) {
orte_show_help("help-orte-rmaps-base.txt",
"orte-rmaps-base:no-available-resources",
true);
return ORTE_ERR_SILENT;
}
/* if num_procs wasn't specified, set it now */
if (0 == app->num_procs) {
app->num_procs = num_nodes;
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: setting num procs to %s for app %s",
ORTE_VPID_PRINT(app->num_procs), app->app);
} else if (num_nodes < app->num_procs) {
orte_show_help("help-orte-rmaps-base.txt", "seq:not-enough-resources", true,
app->num_procs, num_nodes);
return ORTE_ERR_SILENT;
}
if (seq_list == &default_seq_list) {
sq = save;
} else {
sq = (seq_node_t*)opal_list_get_first(seq_list);
}
for (n=0; n < app->num_procs; n++) {
/* find this node on the global array - this is necessary so
* that our mapping gets saved on that array as the objects
* returned by the hostfile function are -not- on the array
*/
node = NULL;
for (j=0; j < orte_node_pool->size; j++) {
if (NULL == (node = (orte_node_t*)opal_pointer_array_get_item(orte_node_pool, j))) {
continue;
}
if (0 == strcmp(sq->hostname, node->name)) {
break;
}
}
if (NULL == node) {
/* wasn't found - that is an error */
orte_show_help("help-orte-rmaps-seq.txt",
"orte-rmaps-seq:resource-not-found",
true, sq->hostname);
rc = ORTE_ERR_SILENT;
goto error;
}
/* ensure the node is in the map */
if (!ORTE_FLAG_TEST(node, ORTE_NODE_FLAG_MAPPED)) {
OBJ_RETAIN(node);
opal_pointer_array_add(map->nodes, node);
jdata->map->num_nodes++;
ORTE_FLAG_SET(node, ORTE_NODE_FLAG_MAPPED);
}
proc = orte_rmaps_base_setup_proc(jdata, node, i);
if ((node->slots < (int)node->num_procs) ||
(0 < node->slots_max && node->slots_max < (int)node->num_procs)) {
if (ORTE_MAPPING_NO_OVERSUBSCRIBE & ORTE_GET_MAPPING_DIRECTIVE(jdata->map->mapping)) {
orte_show_help("help-orte-rmaps-base.txt", "orte-rmaps-base:alloc-error",
true, node->num_procs, app->app);
ORTE_UPDATE_EXIT_STATUS(ORTE_ERROR_DEFAULT_EXIT_CODE);
rc = ORTE_ERR_SILENT;
goto error;
}
/* flag the node as oversubscribed so that sched-yield gets
* properly set
*/
ORTE_FLAG_SET(node, ORTE_NODE_FLAG_OVERSUBSCRIBED);
ORTE_FLAG_SET(jdata, ORTE_JOB_FLAG_OVERSUBSCRIBED);
/* check for permission */
if (ORTE_FLAG_TEST(node, ORTE_NODE_FLAG_SLOTS_GIVEN)) {
/* if we weren't given a directive either way, then we will error out
* as the #slots were specifically given, either by the host RM or
* via hostfile/dash-host */
if (!(ORTE_MAPPING_SUBSCRIBE_GIVEN & ORTE_GET_MAPPING_DIRECTIVE(orte_rmaps_base.mapping))) {
orte_show_help("help-orte-rmaps-base.txt", "orte-rmaps-base:alloc-error",
true, app->num_procs, app->app);
ORTE_UPDATE_EXIT_STATUS(ORTE_ERROR_DEFAULT_EXIT_CODE);
return ORTE_ERR_SILENT;
} else if (ORTE_MAPPING_NO_OVERSUBSCRIBE & ORTE_GET_MAPPING_DIRECTIVE(jdata->map->mapping)) {
/* if we were explicitly told not to oversubscribe, then don't */
orte_show_help("help-orte-rmaps-base.txt", "orte-rmaps-base:alloc-error",
true, app->num_procs, app->app);
ORTE_UPDATE_EXIT_STATUS(ORTE_ERROR_DEFAULT_EXIT_CODE);
return ORTE_ERR_SILENT;
}
}
}
/* assign the vpid */
proc->name.vpid = vpid++;
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: assign proc %s to node %s for app %s",
ORTE_VPID_PRINT(proc->name.vpid), sq->hostname, app->app);
/* record the cpuset, if given */
if (NULL != sq->cpuset) {
hwloc_cpuset_t bitmap;
char *cpu_bitmap;
if (NULL == node->topology) {
/* not allowed - for sequential cpusets, we must have
* the topology info
*/
orte_show_help("help-orte-rmaps-base.txt", "rmaps:no-topology", true, node->name);
rc = ORTE_ERR_SILENT;
goto error;
}
/* if we are using hwthreads as cpus and binding to hwthreads, then
* we can just copy the cpuset across as it already specifies things
* at that level */
if (opal_hwloc_use_hwthreads_as_cpus &&
OPAL_BIND_TO_HWTHREAD == OPAL_GET_BINDING_POLICY(opal_hwloc_binding_policy)) {
cpu_bitmap = strdup(sq->cpuset);
} else {
/* setup the bitmap */
bitmap = hwloc_bitmap_alloc();
/* parse the slot_list to find the socket and core */
if (ORTE_SUCCESS != (rc = opal_hwloc_base_slot_list_parse(sq->cpuset, node->topology, rtype, bitmap))) {
ORTE_ERROR_LOG(rc);
hwloc_bitmap_free(bitmap);
goto error;
}
/* note that we cannot set the proc locale to any specific object
* as the slot list may have assigned it to more than one - so
* leave that field NULL
*/
/* set the proc to the specified map */
hwloc_bitmap_list_asprintf(&cpu_bitmap, bitmap);
hwloc_bitmap_free(bitmap);
}
orte_set_attribute(&proc->attributes, ORTE_PROC_CPU_BITMAP, ORTE_ATTR_GLOBAL, cpu_bitmap, OPAL_STRING);
opal_output_verbose(5, orte_rmaps_base_framework.framework_output,
"mca:rmaps:seq: binding proc %s to cpuset %s bitmap %s",
ORTE_VPID_PRINT(proc->name.vpid), sq->cpuset, cpu_bitmap);
/* we are going to bind to cpuset since the user is specifying the cpus */
OPAL_SET_BINDING_POLICY(jdata->map->binding, OPAL_BIND_TO_CPUSET);
/* note that the user specified the mapping */
ORTE_SET_MAPPING_POLICY(jdata->map->mapping, ORTE_MAPPING_BYUSER);
ORTE_SET_MAPPING_DIRECTIVE(jdata->map->mapping, ORTE_MAPPING_GIVEN);
/* cleanup */
free(cpu_bitmap);
} else {
hwloc_obj_t locale;
/* assign the locale - okay for the topo to be null as
* it just means it wasn't returned
*/
if (NULL != node->topology) {
locale = hwloc_get_root_obj(node->topology);
orte_set_attribute(&proc->attributes, ORTE_PROC_HWLOC_LOCALE,
ORTE_ATTR_LOCAL, locale, OPAL_PTR);
}
}
/* add to the jdata proc array */
if (ORTE_SUCCESS != (rc = opal_pointer_array_set_item(jdata->procs, proc->name.vpid, proc))) {
ORTE_ERROR_LOG(rc);
goto error;
}
/* move to next node */
sq = (seq_node_t*)opal_list_get_next(&sq->super);
}
/** track the total number of processes we mapped */
jdata->num_procs += app->num_procs;
/* cleanup the node list if it came from this app_context */
if (seq_list != &default_seq_list) {
OPAL_LIST_DESTRUCT(seq_list);
} else {
save = sq;
}
}
return ORTE_SUCCESS;
error:
OPAL_LIST_DESTRUCT(&default_seq_list);
return rc;
}
/*
* This function makes a call to "ps" to find out the processes that
* are running on this node. It then attempts to kill off any orteds
* and orteruns that are not related to this job.
*/
static
void kill_procs(void) {
int ortedpid;
char *fullprocname;
char *procname;
char *pidstr;
char *user;
int procpid;
FILE *psfile;
char *inputline;
char *this_user;
int uid;
char *separator = " \t"; /* output can be delimited by space or tab */
/*
* This is the command that is used to get the information about
* all the processes that are running. The output looks like the
* following:
* COMMAND PID USER
* tcsh 12556 rolfv
* ps 14424 rolfv
* etc.
* Currently, we do not make use of the USER field, but we may later
* on so we grab it also.
*/
/*
* The configure determines if there is a valid ps command for us to
* use. If it is set to unknown, then we skip this section.
*/
char command[] = ORTE_CLEAN_PS_CMD;
if (0 == strcmp("unknown", command)) {
return;
}
if (orte_clean_globals.verbose) {
fprintf(stderr, "orte-clean: killing any lingering procs\n");
}
/*
* Get our parent pid which is the pid of the orted.
*/
ortedpid = getppid();
/* get the name of the user */
uid = getuid();
asprintf(&this_user, "%d", uid);
/*
* There is a race condition here. The problem is that we are looking
* for any processes named orted. However, one may erroneously find more
* orteds then there really are because the orted is doing a series of
* fork/execs. If we run with more than one orte-clean on a node, then
* one of the orte-cleans may catch the other one while it has forked,
* but not exec'ed. It will therefore kill an orte-clean. Now one
* can argue it is silly to run more than one orte-clean on a node, and
* this is true. We will have to figure out how to prevent this. For
* now, we use a big hammer and just sleep a second to decrease the
* probability.
*/
sleep(1);
psfile = popen(command, "r");
/*
* Read the first line of the output. We just throw it away
* as it is the header consisting of the words COMMAND, PID and
* USER.
*/
if (NULL == (inputline = orte_getline(psfile))) {
free(this_user);
pclose(psfile);
return;
}
free(inputline); /* dump the header line */
while (NULL != (inputline = orte_getline(psfile))) {
/* The three fields are typically seperated by spaces */
fullprocname = strtok(inputline, separator);
pidstr = strtok(NULL, separator);
user = strtok(NULL, separator);
if (orte_clean_globals.debug) {
fprintf(stdout, "\norte-clean: user(pid)=%s, me=%s\n",
user, this_user);
}
/* If the user is not us, and the user is not root, then skip
* further checking. If the user is root, then continue on as
* we want root to kill off everybody. */
if ((0 != strcmp(user, this_user)) && (0 != strcmp("root", this_user))) {
/* not us */
free(inputline);
continue;
}
procpid = atoi(pidstr);
procname = opal_basename(fullprocname);
if (orte_clean_globals.debug) {
fprintf(stdout, "orte-clean: fullname=%s, basename=%s, pid=%d\n",
fullprocname, procname, procpid);
}
/*
* Look for any orteds that are not our parent and attempt to
* kill them. We currently do not worry whether we are the
* owner or not. If we are not, we will just fail to send
* the signal and that is OK. This also allows a root process
* to kill all orteds.
*
* NOTE: need to also look for "(orted)" as a non-active
* proc is sometimes reported that way
*/
if (0 == strncmp("orted", procname, strlen("orted")) ||
0 == strncmp("(orted)", procname, strlen("(orted)"))) {
if (procpid != ortedpid) {
if (orte_clean_globals.verbose) {
fprintf(stderr, "orte-clean: found potential rogue orted process"
" (pid=%d,user=%s), sending SIGKILL...\n",
procpid, user);
}
/*
* We ignore the return code here as we do not really
* care whether this worked or not.
*/
(void)kill(procpid, SIGKILL);
}
}
/*
* Now check for any orteruns.
*/
if (0 == strncmp("orterun", procname, strlen("orterun")) ||
0 == strncmp("mpirun", procname, strlen("mpirun"))) {
/* if we are on the same node as the HNP, then the ortedpid
* is the same as that of our orterun, so don't kill it
*/
if (procpid != ortedpid) {
if (orte_clean_globals.verbose) {
fprintf(stderr, "orte-clean: found potential rogue orterun process"
" (pid=%d,user=%s), sending SIGKILL...\n",
procpid, user);
}
/* if we are a singleton, check the hnp_pid as well */
if (ORTE_PROC_IS_SINGLETON) {
if (procpid != orte_process_info.hnp_pid) {
(void)kill(procpid, SIGKILL);
}
} else {
/* We ignore the return code here as we do not really
* care whether this worked or not.
*/
(void)kill(procpid, SIGKILL);
}
}
}
free(inputline);
free(procname);
}
free(this_user);
pclose(psfile);
return;
}
