/**************************************************************************
* Callback invoked when matching a closing pattern tag for a CISML file of
* a secondary motif database. Processes the matches found (see
* spamo-matches.c for more details) and if the motif had a significant
* spacing it optionally dumps the sequence matches to file.
**************************************************************************/
void motif_end_secondary(void *ctx) {
SECONDARY_LOADER_T *loader = (SECONDARY_LOADER_T*)ctx;
if (loader->secondary_motif == NULL) return;
// process matches
process_matches(loader->margin, loader->bin, loader->significant_pvalue, loader->motif_evalue_cutoff,
loader->test_max, loader->primary_motif, loader->sequences,
loader->secondary_motif, loader->n_secondary_motifs, loader->secondary_matches);
// dump sequences (if requested)
if (loader->output_sequences && loader->secondary_motif->sig_count > 0) {
output_sequence_matches(loader->output_directory, loader->margin, loader->bin, loader->significant_pvalue, loader->dump_sig_only, loader->sequences,
loader->primary_motif, loader->secondary_motif, loader->secondary_matches);
}
}
/*
perform a 3-way match between 3 hash sources
*/
static void three_way(struct hash_handle *hh1, struct hash_handle *hh2,
struct hash_handle *hh_exclude)
{
while (hh_next(hh1) == 0) {
if (hh_next_match(hh2, hh1) == 0 &&
(!hh_exclude || hh_next_match(hh_exclude, hh1) != 0)) {
register_match(hh1, hh2);
}
if (hh_eof(hh2)) break;
}
process_matches(hh1, hh2);
}
