int main(int argc, char **argv)
{
struct FitsFile input1, input2;
char input_file1[MAXSTR];
char input_file2[MAXSTR];
struct CatalogRow *cat1, *cat2;
int n1, n2;
double tol_ang;
/***************************************/
/* Process the command-line parameters */
/***************************************/
fstatus = stdout;
if (argc!=8) {
fprintf(stderr,"usage: %s distance_in_arcsec input_cat1 input_cat2 fits1 fits2 output_cat1 output_cat2\n",argv[0]);
exit(1);
}
tol_ang = atof(argv[1])/60/60 * D2R;
strcpy(input_file1, argv[4]);
strcpy(input_file2, argv[5]);
readFits(input_file1, &input1);
readFits(input_file2, &input2);
cat1 = (struct CatalogRow*)malloc(sizeof(struct CatalogRow*)*MAXLINE);
cat2 = (struct CatalogRow*)malloc(sizeof(struct CatalogRow*)*MAXLINE);
n1 = read_file(argv[2], &input2, cat1);
printf("n1=%d\n",n1);
n2 = read_file(argv[3], &input1, cat2);
printf("n2=%d\n",n2);
xmatch(cat1, n1, cat2, n2, tol_ang);
reduce_dup(argv[2], argv[6], cat1, n1, cat2, n2, 0);
reduce_dup(argv[3], argv[7], cat2, n2, cat1, n1, 1);
return 0;
}
int main(int argc, char **argv)
{
int i, j, c, ifile, status;
long fpixel[4], nelements;
int nullcnt;
int imin, jmin, haveMinMax;
int imax, jmax;
int istart, iend, ilength;
int jstart, jend, jlength;
double *buffer, *abuffer;
double datamin, datamax;
double areamin, areamax;
int narea1, narea2;
double avearea1, avearea2;
double maxarea1, maxarea2;
double pixel_value;
double **data;
double **area;
char template_file[MAXSTR];
char line [MAXSTR];
char infile[2][MAXSTR];
char inarea[2][MAXSTR];
/*************************************************/
/* Initialize output FITS basic image parameters */
/*************************************************/
int bitpix = DOUBLE_IMG;
long naxis = 2;
/************************************************/
/* Make a NaN value to use setting blank pixels */
/************************************************/
union
{
double d;
char c[8];
}
value;
double nan;
for(i=0; i<8; ++i)
value.c[i] = 255;
nan = value.d;
/***************************************/
/* Process the command-line parameters */
/***************************************/
debug = 0;
noAreas = 0;
coverageLimit = 0.0001;
opterr = 0;
fstatus = stdout;
while ((c = getopt(argc, argv, "nc:d:s:")) != EOF)
{
switch (c)
{
case 'n':
noAreas = 1;
break;
case 'c':
coverageLimit = atof(optarg);
break;
case 'd':
debug = debugCheck(optarg);
break;
case 's':
if((fstatus = fopen(optarg, "w+")) == (FILE *)NULL)
{
printf("[struct stat=\"ERROR\", msg=\"Cannot open status file: %s\"]\n",
optarg);
exit(1);
}
break;
default:
printf("[struct stat=\"ERROR\", msg=\"Usage: %s [-d level] [-n(o-areas)] [-s statusfile] in1.fits in2.fits out.fits hdr.template\"]\n", argv[0]);
exit(1);
break;
}
}
if (argc - optind < 4)
{
printf("[struct stat=\"ERROR\", msg=\"Usage: %s [-d level] [-n(o-areas)] [-s statusfile] in1.fits in2.fits out.fits hdr.template\"]\n", argv[0]);
exit(1);
}
strcpy(input_file1, argv[optind]);
strcpy(input_file2, argv[optind + 1]);
strcpy(output_file, argv[optind + 2]);
strcpy(template_file, argv[optind + 3]);
checkHdr(template_file, 1, 0);
if(strlen(output_file) > 5 &&
strncmp(output_file+strlen(output_file)-5, ".fits", 5) == 0)
output_file[strlen(output_file)-5] = '\0';
strcpy(output_area_file, output_file);
strcat(output_file, ".fits");
strcat(output_area_file, "_area.fits");
if(debug >= 1)
{
printf("input_file1 = [%s]\n", input_file1);
printf("input_file2 = [%s]\n", input_file2);
printf("output_file = [%s]\n", output_file);
printf("output_area_file = [%s]\n", output_area_file);
printf("template_file = [%s]\n", template_file);
fflush(stdout);
}
/****************************/
/* Get the input file names */
/****************************/
if(strlen(input_file1) > 5
&& strcmp(input_file1+strlen(input_file1)-5, ".fits") == 0)
{
strcpy(line, input_file1);
line[strlen(line)-5] = '\0';
strcpy(infile[0], line);
strcat(infile[0], ".fits");
strcpy(inarea[0], line);
strcat(inarea[0], "_area.fits");
}
else
{
strcpy(infile[0], input_file1);
strcat(infile[0], ".fits");
strcpy(inarea[0], input_file1);
strcat(inarea[0], "_area.fits");
}
if(strlen(input_file2) > 5
&& strcmp(input_file2+strlen(input_file2)-5, ".fits") == 0)
{
strcpy(line, input_file2);
line[strlen(line)-5] = '\0';
strcpy(infile[1], line);
strcat(infile[1], ".fits");
strcpy(inarea[1], line);
strcat(inarea[1], "_area.fits");
}
else
{
strcpy(infile[1], input_file2);
strcat(infile[1], ".fits");
strcpy(inarea[1], input_file2);
strcat(inarea[1], "_area.fits");
}
if(debug >= 1)
{
printf("\ninput files:\n\n");
printf(" [%s][%s]\n", infile[0], inarea[0]);
printf(" [%s][%s]\n", infile[1], inarea[1]);
printf("\n");
}
/*************************************************/
/* Process the output header template to get the */
/* image size, coordinate system and projection */
/*************************************************/
readTemplate(template_file);
if(debug >= 1)
{
printf("output.naxes[0] = %ld\n", output.naxes[0]);
printf("output.naxes[1] = %ld\n", output.naxes[1]);
printf("output.crpix1 = %-g\n", output.crpix1);
printf("output.crpix2 = %-g\n", output.crpix2);
fflush(stdout);
}
/*****************************************************/
/* We open the two input files briefly to get enough */
/* information to determine the region of overlap */
/* (for memory allocation purposes) */
/*****************************************************/
readFits(infile[0], inarea[0]);
imin = output.crpix1 - input.crpix1;
jmin = output.crpix2 - input.crpix2;
imax = imin + input.naxes[0];
jmax = jmin + input.naxes[1];
istart = imin;
iend = imax;
jstart = jmin;
jend = jmax;
if(debug >= 1)
{
printf("\nFile 1:\n");
printf("input.naxes[0] = %ld\n", input.naxes[0]);
printf("input.naxes[1] = %ld\n", input.naxes[1]);
printf("input.crpix1 = %-g\n", input.crpix1);
printf("input.crpix2 = %-g\n", input.crpix2);
printf("imin = %d\n", imin);
printf("imax = %d\n", imax);
printf("jmin = %d\n", jmin);
printf("jmax = %d\n\n", jmax);
printf("istart = %d\n", istart);
printf("iend = %d\n", iend);
printf("jstart = %d\n", jstart);
printf("jend = %d\n", jend);
fflush(stdout);
}
status = 0;
if(fits_close_file(input.fptr, &status))
printFitsError(status);
if(!noAreas)
{
if(fits_close_file(input_area.fptr, &status))
printFitsError(status);
}
readFits(infile[1], inarea[1]);
imin = output.crpix1 - input.crpix1;
jmin = output.crpix2 - input.crpix2;
imax = imin + input.naxes[0];
jmax = jmin + input.naxes[1];
if(debug >= 1)
{
printf("\nFile 2:\n");
printf("input.naxes[0] = %ld\n", input.naxes[0]);
printf("input.naxes[1] = %ld\n", input.naxes[1]);
printf("input.crpix1 = %-g\n", input.crpix1);
printf("input.crpix2 = %-g\n", input.crpix2);
printf("imin = %d\n", imin);
printf("imax = %d\n", imax);
printf("jmin = %d\n", jmin);
printf("jmax = %d\n", jmax);
printf("istart = %d\n\n", istart);
printf("iend = %d\n", iend);
printf("jstart = %d\n", jstart);
printf("jend = %d\n", jend);
printf("\n");
fflush(stdout);
}
if(imin > istart) istart = imin;
if(imax < iend ) iend = imax;
if(jmin > jstart) jstart = jmin;
if(jmax < jend ) jend = jmax;
if(istart < 0) istart = 0;
if(jstart < 0) jstart = 0;
if(iend > output.naxes[0]-1) iend = output.naxes[0]-1;
if(jend > output.naxes[1]-1) jend = output.naxes[1]-1;
ilength = iend - istart + 1;
jlength = jend - jstart + 1;
if(debug >= 1)
{
printf("\nComposite:\n");
printf("input.naxes[0] = %ld\n", input.naxes[0]);
printf("input.naxes[1] = %ld\n", input.naxes[1]);
printf("input.crpix1 = %-g\n", input.crpix1);
printf("input.crpix2 = %-g\n", input.crpix2);
printf("istart = %d\n", istart);
printf("iend = %d\n", iend);
printf("jstart = %d\n", jstart);
printf("jend = %d\n", jend);
printf("ilength = %d\n", ilength);
printf("jlength = %d\n", jlength);
printf("\n");
fflush(stdout);
}
if(fits_close_file(input.fptr, &status))
printFitsError(status);
if(!noAreas)
{
if(fits_close_file(input_area.fptr, &status))
printFitsError(status);
}
/*********************/
/* Check for overlap */
/*********************/
if(ilength <= 0 || jlength <= 0)
printError("Images don't overlap");
/***********************************************/
/* Allocate memory for the output image pixels */
/***********************************************/
data = (double **)malloc(jlength * sizeof(double *));
for(j=0; j<jlength; ++j)
data[j] = (double *)malloc(ilength * sizeof(double));
if(debug >= 1)
{
printf("%d bytes allocated for image pixels\n",
ilength * jlength * sizeof(double));
fflush(stdout);
}
/****************************/
/* Initialize data to zeros */
/****************************/
for (j=0; j<jlength; ++j)
{
for (i=0; i<ilength; ++i)
{
data[j][i] = 0.;
}
}
/**********************************************/
/* Allocate memory for the output pixel areas */
/**********************************************/
area = (double **)malloc(jlength * sizeof(double *));
for(j=0; j<jlength; ++j)
area[j] = (double *)malloc(ilength * sizeof(double));
if(debug >= 1)
{
printf("%d bytes allocated for pixel areas\n",
ilength * jlength * sizeof(double));
fflush(stdout);
}
/****************************/
/* Initialize area to zeros */
/****************************/
for (j=0; j<jlength; ++j)
{
for (i=0; i<ilength; ++i)
{
area[j][i] = 0.;
}
}
/***************************/
/* For the two input files */
/***************************/
time(&currtime);
start = currtime;
avearea1 = 0.;
avearea2 = 0.;
maxarea1 = 0.;
maxarea2 = 0.;
narea1 = 0.;
narea2 = 0.;
for(ifile=0; ifile<2; ++ifile)
{
/************************/
/* Read the input image */
/************************/
readFits(infile[ifile], inarea[ifile]);
imin = output.crpix1 - input.crpix1;
jmin = output.crpix2 - input.crpix2;
if(debug >= 1)
{
printf("\nflux file = %s\n", infile[ifile]);
printf("input.naxes[0] = %ld\n", input.naxes[0]);
printf("input.naxes[1] = %ld\n", input.naxes[1]);
printf("input.crpix1 = %-g\n", input.crpix1);
printf("input.crpix2 = %-g\n", input.crpix2);
printf("\narea file = %s\n", inarea[ifile]);
printf("input_area.naxes[0] = %ld\n", input.naxes[0]);
printf("input_area.naxes[1] = %ld\n", input.naxes[1]);
printf("input_area.crpix1 = %-g\n", input.crpix1);
printf("input_area.crpix2 = %-g\n", input.crpix2);
printf("\nimin = %d\n", imin);
printf("jmin = %d\n\n", jmin);
fflush(stdout);
}
/**********************************************************/
/* Create the output array by processing the input pixels */
/**********************************************************/
buffer = (double *)malloc(input.naxes[0] * sizeof(double));
abuffer = (double *)malloc(input.naxes[0] * sizeof(double));
fpixel[0] = 1;
fpixel[1] = 1;
fpixel[2] = 1;
fpixel[3] = 1;
nelements = input.naxes[0];
status = 0;
/*****************************/
/* Loop over the input lines */
/*****************************/
for (j=0; j<input.naxes[1]; ++j)
{
if(debug >= 2)
{
printf("\rProcessing input row %5d ", j);
fflush(stdout);
}
/***********************************/
/* Read a line from the input file */
/***********************************/
if(fits_read_pix(input.fptr, TDOUBLE, fpixel, nelements, NULL,
buffer, &nullcnt, &status))
printFitsError(status);
if(noAreas)
{
for(i=0; i<input.naxes[0]; ++i)
abuffer[i] = 1.;
}
else
{
if(fits_read_pix(input_area.fptr, TDOUBLE, fpixel, nelements, NULL,
abuffer, &nullcnt, &status))
printFitsError(status);
}
++fpixel[1];
/************************/
/* For each input pixel */
/************************/
for (i=0; i<input.naxes[0]; ++i)
{
pixel_value = buffer[i] * abuffer[i];
if(debug >= 4)
{
printf("input: line %5d / pixel %5d, value = %10.2e (%10.2e) [array: %5d %5d]\n",
j, i, buffer[i], abuffer[i], j+jmin-jstart, i+imin-istart);
fflush(stdout);
}
if(i+imin < istart) continue;
if(j+jmin < jstart) continue;
if(i+imin >= iend) continue;
if(j+jmin >= jend) continue;
if(debug >= 3)
{
printf("keep: line %5d / pixel %5d, value = %10.2e (%10.2e) [array: %5d %5d]\n",
j, i, buffer[i], abuffer[i], j+jmin-jstart, i+imin-istart);
fflush(stdout);
}
if(ifile == 0)
{
if(mNaN(buffer[i])
|| abuffer[i] <= 0.)
{
if(debug >= 5)
{
printf("First file. Setting data to NaN and area to zero.\n");
fflush(stdout);
}
data[j+jmin-jstart][i+imin-istart] = nan;
area[j+jmin-jstart][i+imin-istart] = 0.;
if(debug >= 5)
{
printf("done.\n");
fflush(stdout);
}
continue;
}
else
{
if(debug >= 5)
{
printf("First file. Setting data to pixel value.\n");
fflush(stdout);
}
data[j+jmin-jstart][i+imin-istart] = pixel_value;
area[j+jmin-jstart][i+imin-istart] = abuffer[i];
++narea1;
avearea1 += abuffer[i];
if(abuffer[i] > maxarea1)
maxarea1 = abuffer[i];
if(debug >= 5)
{
printf("done.\n");
fflush(stdout);
}
}
}
else
{
if(mNaN(buffer[i])
|| abuffer[i] <= 0.
|| data[j+jmin-jstart][i+imin-istart] == nan
|| area[j+jmin-jstart][i+imin-istart] == 0.)
{
if(debug >= 5)
{
printf("Second file. One or the other value is NaN (or zero area).\n");
fflush(stdout);
}
data[j+jmin-jstart][i+imin-istart] = nan;
area[j+jmin-jstart][i+imin-istart] = 0.;
continue;
}
else
{
if(debug >= 5)
{
printf("Second file. Subtracting pixel value.\n");
fflush(stdout);
}
data[j+jmin-jstart][i+imin-istart] -= pixel_value;
area[j+jmin-jstart][i+imin-istart] += abuffer[i];
++narea2;
avearea2 += abuffer[i];
if(abuffer[i] > maxarea2)
maxarea2 = abuffer[i];
if(debug >= 5)
{
printf("done.\n");
fflush(stdout);
}
}
}
}
}
free(buffer);
free(abuffer);
if(fits_close_file(input.fptr, &status))
printFitsError(status);
if(!noAreas)
{
if(fits_close_file(input_area.fptr, &status))
printFitsError(status);
}
}
if(debug >= 1)
{
time(&currtime);
printf("\nDone reading data (%.0f seconds)\n",
(double)(currtime - start));
fflush(stdout);
}
/************************************/
/* Anly keep those pixels that were */
/* covered twice reasonably fully */
/************************************/
avearea1 = avearea1/narea1;
avearea2 = avearea2/narea2;
areamax = maxarea1 + maxarea2;
if(debug >= 2)
{
printf("\npixel areas: %-g + %-g = %-g\n\n", avearea1, avearea2, areamax);
fflush(stdout);
}
for (j=0; j<jlength; ++j)
{
for (i=0; i<ilength; ++i)
{
if(mNaN(area[j][i]) || area[j][i] == 0.)
{
data[j][i] = 0.;
area[j][i] = 0.;
}
else
{
if(fabs(area[j][i] - areamax)/areamax > coverageLimit)
{
data[j][i] = 0.;
area[j][i] = 0.;
}
}
}
}
/*********************************/
/* Normalize image data based on */
/* total area added to pixel */
/*********************************/
haveMinMax = 0;
datamax = 0.,
datamin = 0.;
areamin = 0.;
areamax = 0.;
imin = 99999;
imax = 0;
jmin = 99999;
jmax = 0;
for (j=0; j<jlength; ++j)
{
for (i=0; i<ilength; ++i)
{
if(area[j][i] > 0.)
{
data[j][i] = 2. * data[j][i] / area[j][i];
if(!haveMinMax)
{
datamin = data[j][i];
datamax = data[j][i];
areamin = area[j][i];
areamax = area[j][i];
haveMinMax = 1;
}
if(data[j][i] < datamin) datamin = data[j][i];
if(data[j][i] > datamax) datamax = data[j][i];
if(area[j][i] < areamin) areamin = area[j][i];
if(area[j][i] > areamax) areamax = area[j][i];
if(j < jmin) jmin = j;
if(j > jmax) jmax = j;
if(i < imin) imin = i;
if(i > imax) imax = i;
}
else
{
data[j][i] = nan;
area[j][i] = 0.;
}
}
}
imin += istart;
jmin += jstart;
imax += istart;
jmax += jstart;
if(debug >= 1)
{
printf("Data min = %-g\n", datamin);
printf("Data max = %-g\n", datamax);
printf("Area min = %-g\n", areamin);
printf("Area max = %-g\n\n", areamax);
printf("j min = %d\n", jmin);
printf("j max = %d\n", jmax);
printf("i min = %d\n", imin);
printf("i max = %d\n", imax);
}
if(jmin > jmax || imin > imax)
printError("All pixels are blank.");
/********************************/
/* Create the output FITS files */
/********************************/
remove(output_file);
remove(output_area_file);
if(fits_create_file(&output.fptr, output_file, &status))
printFitsError(status);
if(fits_create_file(&output_area.fptr, output_area_file, &status))
printFitsError(status);
/*********************************************************/
/* Create the FITS image. All the required keywords are */
/* handled automatically. */
/*********************************************************/
if (fits_create_img(output.fptr, bitpix, naxis, output.naxes, &status))
printFitsError(status);
if(debug >= 1)
{
printf("\nFITS data image created (not yet populated)\n");
fflush(stdout);
}
if (fits_create_img(output_area.fptr, bitpix, naxis, output_area.naxes, &status))
printFitsError(status);
if(debug >= 1)
{
printf("FITS area image created (not yet populated)\n");
fflush(stdout);
}
/****************************************/
/* Set FITS header from a template file */
/****************************************/
if(fits_write_key_template(output.fptr, template_file, &status))
printFitsError(status);
if(debug >= 1)
{
printf("Template keywords written to FITS data image\n");
fflush(stdout);
}
if(fits_write_key_template(output_area.fptr, template_file, &status))
printFitsError(status);
if(debug >= 1)
{
printf("Template keywords written to FITS area image\n\n");
fflush(stdout);
}
/***************************/
/* Modify BITPIX to be -64 */
/***************************/
if(fits_update_key_lng(output.fptr, "BITPIX", -64,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_lng(output_area.fptr, "BITPIX", -64,
(char *)NULL, &status))
printFitsError(status);
/***************************************************/
/* Update NAXIS, NAXIS1, NAXIS2, CRPIX1 and CRPIX2 */
/***************************************************/
if(fits_update_key_lng(output.fptr, "NAXIS", 2,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_lng(output.fptr, "NAXIS1", imax-imin+1,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_lng(output.fptr, "NAXIS2", jmax-jmin+1,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_dbl(output.fptr, "CRPIX1", output.crpix1-imin, -14,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_dbl(output.fptr, "CRPIX2", output.crpix2-jmin, -14,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_lng(output_area.fptr, "NAXIS", 2,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_lng(output_area.fptr, "NAXIS1", imax-imin+1,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_lng(output_area.fptr, "NAXIS2", jmax-jmin+1,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_dbl(output_area.fptr, "CRPIX1", output.crpix1-imin, -14,
(char *)NULL, &status))
printFitsError(status);
if(fits_update_key_dbl(output_area.fptr, "CRPIX2", output.crpix2-jmin, -14,
(char *)NULL, &status))
printFitsError(status);
if(debug >= 1)
{
printf("Template keywords BITPIX, CRPIX, and NAXIS updated\n");
fflush(stdout);
}
/************************/
/* Write the image data */
/************************/
fpixel[0] = 1;
fpixel[1] = 1;
nelements = imax - imin + 1;
for(j=jmin; j<=jmax; ++j)
{
if (fits_write_pix(output.fptr, TDOUBLE, fpixel, nelements,
(void *)(&data[j-jstart][imin-istart]), &status))
printFitsError(status);
++fpixel[1];
}
free(data[0]);
if(debug >= 1)
{
printf("Data written to FITS data image\n");
fflush(stdout);
}
/***********************/
/* Write the area data */
/***********************/
fpixel[0] = 1;
fpixel[1] = 1;
nelements = imax - imin + 1;
for(j=jmin; j<=jmax; ++j)
{
if (fits_write_pix(output_area.fptr, TDOUBLE, fpixel, nelements,
(void *)(&area[j-jstart][imin-istart]), &status))
printFitsError(status);
++fpixel[1];
}
free(area[0]);
if(debug >= 1)
{
printf("Data written to FITS area image\n\n");
fflush(stdout);
}
/***********************/
/* Close the FITS file */
/***********************/
if(fits_close_file(output.fptr, &status))
printFitsError(status);
if(debug >= 1)
{
printf("FITS data image finalized\n");
fflush(stdout);
}
if(fits_close_file(output_area.fptr, &status))
printFitsError(status);
if(debug >= 1)
{
printf("FITS area image finalized\n\n");
fflush(stdout);
}
if(debug >= 1)
{
time(&currtime);
printf("Done (%.0f seconds total)\n", (double)(currtime - start));
fflush(stdout);
}
fprintf(fstatus, "[struct stat=\"OK\"]\n");
fflush(stdout);
exit(0);
}
int main(int argc, char **argv)
{
int i, j, countRange, countNaN, status;
int haveMinMax, haveVal, writeOutput;
long fpixel[4], nelements;
double *inbuffer;
double NaNvalue;
double minblank, maxblank;
double *outbuffer;
char *end;
/************************************************/
/* Make a NaN value to use setting blank pixels */
/************************************************/
union
{
double d;
char c[8];
}
value;
double nan;
for(i=0; i<8; ++i)
value.c[i] = 255;
nan = value.d;
/***************************************/
/* Process the command-line parameters */
/***************************************/
fstatus = stdout;
debug = 0;
haveVal = 0;
writeOutput = 1;
for(i=0; i<argc; ++i)
{
if(strcmp(argv[i], "-d") == 0)
{
if(i+1 >= argc)
{
printf("[struct stat=\"ERROR\", msg=\"No debug level given\"]\n");
exit(1);
}
debug = strtol(argv[i+1], &end, 0);
if(end - argv[i+1] < strlen(argv[i+1]))
{
printf("[struct stat=\"ERROR\", msg=\"Debug level string is invalid: '%s'\"]\n", argv[i+1]);
exit(1);
}
if(debug < 0)
{
printf("[struct stat=\"ERROR\", msg=\"Debug level value cannot be negative\"]\n");
exit(1);
}
argv += 2;
argc -= 2;
}
if(strcmp(argv[i], "-v") == 0)
{
if(i+1 >= argc)
{
printf("[struct stat=\"ERROR\", msg=\"No value given for NaN conversion\"]\n");
exit(1);
}
NaNvalue = strtod(argv[i+1], &end);
if(end - argv[i+1] < strlen(argv[i+1]))
{
printf("[struct stat=\"ERROR\", msg=\"NaN conversion value string is invalid: '%s'\"]\n", argv[i+1]);
exit(1);
}
haveVal = 1;
argv += 2;
argc -= 2;
}
}
if (argc < 3)
{
printf ("[struct stat=\"ERROR\", msg=\"Usage: %s [-d level][-v NaN-value] in.fits out.fits [minblank maxblank] (output file name '-' means no file)\"]\n", argv[0]);
exit(1);
}
strcpy(input_file, argv[1]);
if(input_file[0] == '-')
{
printf ("[struct stat=\"ERROR\", msg=\"Invalid input file '%s'\"]\n", input_file);
exit(1);
}
strcpy(output_file, argv[2]);
if(output_file[0] == '-')
writeOutput = 0;
haveMinMax = 0;
minblank = -2;
maxblank = 2;
if(argc > 3)
{
haveMinMax = 1;
minblank = strtod(argv[3], &end);
if(end < argv[3] + strlen(argv[3]))
{
printf ("[struct stat=\"ERROR\", msg=\"min blank value string is not a number\"]\n");
exit(1);
}
maxblank = strtod(argv[4], &end);
if(end < argv[4] + strlen(argv[4]))
{
printf ("[struct stat=\"ERROR\", msg=\"max blank value string is not a number\"]\n");
exit(1);
}
}
if(debug >= 1)
{
printf("input_file = [%s]\n", input_file);
printf("output_file = [%s]\n", output_file);
printf("minblank = %-g\n", minblank);
printf("maxblank = %-g\n", maxblank);
fflush(stdout);
}
/************************/
/* Read the input image */
/************************/
time(&currtime);
start = currtime;
readFits(input_file);
if(debug >= 1)
{
printf("input.naxes[0] = %ld\n", input.naxes[0]);
printf("input.naxes[1] = %ld\n", input.naxes[1]);
printf("input.crpix1 = %-g\n", input.crpix1);
printf("input.crpix2 = %-g\n", input.crpix2);
fflush(stdout);
}
output.naxes[0] = input.naxes[0];
output.naxes[1] = input.naxes[1];
output.crpix1 = input.crpix1;
output.crpix2 = input.crpix2;
if(writeOutput)
{
/********************************/
/* Create the output FITS files */
/********************************/
remove(output_file);
status = 0;
if(fits_create_file(&output.fptr, output_file, &status))
printFitsError(status);
if(debug >= 1)
{
printf("\nFITS output file created (not yet populated)\n");
fflush(stdout);
}
/********************************/
/* Copy all the header keywords */
/* from the input to the output */
/********************************/
if(fits_copy_header(input.fptr, output.fptr, &status))
printFitsError(status);
if(debug >= 1)
{
printf("Header keywords copied to FITS output file\n\n");
fflush(stdout);
}
/***************************/
/* Modify BITPIX to be -64 */
/***************************/
if(fits_update_key_lng(output.fptr, "BITPIX", -64,
(char *)NULL, &status))
printFitsError(status);
}
/*****************************************************/
/* Allocate memory for the input/output image pixels */
/* (same size as the input image) */
/*****************************************************/
outbuffer = (double *)malloc(output.naxes[0] * sizeof(double));
if(debug >= 1)
{
printf("%ld bytes allocated for row of output image pixels\n",
output.naxes[0] * sizeof(double));
fflush(stdout);
}
inbuffer = (double *)malloc(input.naxes[0] * sizeof(double));
if(debug >= 1)
{
printf("%ld bytes allocated for row of input image pixels\n",
input.naxes[0] * sizeof(double));
fflush(stdout);
}
/*****************************/
/* Loop over the input lines */
/*****************************/
fpixel[0] = 1;
fpixel[1] = 1;
fpixel[2] = 1;
fpixel[3] = 1;
nelements = input.naxes[0];
status = 0;
countRange = 0;
countNaN = 0;
for (j=0; j<input.naxes[1]; ++j)
{
if(debug >= 2)
{
if(debug >= 3)
printf("\n");
printf("\rProcessing input row %5d [So far rangeCount=%d, nanCount=%d]",
j, countRange, countNaN);
if(debug >= 3)
printf("\n");
fflush(stdout);
}
for (i=0; i<output.naxes[0]; ++i)
outbuffer[i] = 0.;
/***********************************/
/* Read a line from the input file */
/***********************************/
if(fits_read_pix(input.fptr, TDOUBLE, fpixel, nelements, NULL,
inbuffer, NULL, &status))
printFitsError(status);
/************************/
/* For each input pixel */
/************************/
for (i=0; i<input.naxes[0]; ++i)
{
if(mNaN(inbuffer[i]) && haveVal)
{
++countNaN;
outbuffer[i] = NaNvalue;
if(debug >= 3)
{
printf("pixel[%d][%d] converted to %-g\n", j, i, NaNvalue);
fflush(stdout);
}
}
else if(haveMinMax
&& inbuffer[i] >= minblank
&& inbuffer[i] <= maxblank)
{
++countRange;
if(haveVal)
{
++countNaN;
outbuffer[i] = NaNvalue;
if(debug >= 3)
{
printf("pixel[%d][%d] converted to NaN -> %-g\n", j, i, NaNvalue);
fflush(stdout);
}
}
else
{
outbuffer[i] = nan;
if(debug >= 3)
{
printf("pixel[%d][%d] converted to NaN\n", j, i);
fflush(stdout);
}
}
}
else
outbuffer[i] = inbuffer[i];
}
/***************************/
/* Write the output buffer */
/***************************/
if(writeOutput)
{
if (fits_write_pix(output.fptr, TDOUBLE, fpixel, nelements,
outbuffer, &status))
printFitsError(status);
}
++fpixel[1];
}
if(debug >= 1)
{
time(&currtime);
printf("\nDone copying data (%d seconds)\n",
(int)(currtime - start));
fflush(stdout);
}
/************************/
/* Close the FITS files */
/************************/
if(fits_close_file(input.fptr, &status))
printFitsError(status);
if(writeOutput)
{
if(fits_close_file(output.fptr, &status))
printFitsError(status);
}
if(debug >= 1)
{
time(&currtime);
printf("Done (%d seconds total)\n", (int)(currtime - start));
fflush(stdout);
}
free(inbuffer);
free(outbuffer);
printf("[struct stat=\"OK\", rangeCount=%d, nanCount=%d]\n", countRange, countNaN);
fflush(stdout);
exit(0);
}
