int surface_fluxes(char overstory,
double BareAlbedo,
double height,
double ice0,
double moist0,
double surf_atten,
double *Melt,
double *Le,
double **aero_resist,
double *displacement,
double *gauge_correction,
double *out_prec,
double *out_rain,
double *out_snow,
double *ref_height,
double *roughness,
double *snow_inflow,
double *wind,
float *root,
int Nbands,
int Nlayers,
int Nveg,
int band,
int dp,
int iveg,
int rec,
int veg_class,
atmos_data_struct *atmos,
dmy_struct *dmy,
energy_bal_struct *energy,
global_param_struct *gp,
cell_data_struct *cell,
snow_data_struct *snow,
soil_con_struct *soil_con,
veg_var_struct *veg_var,
float lag_one,
float sigma_slope,
float fetch,
double *CanopLayerBnd)
/**********************************************************************
surface_fluxes Keith Cherkauer February 29, 2000
Formerly a part of full_energy.c this routine computes all surface
fluxes, and solves the snow accumulation and ablation algorithm.
Solutions are for the current snow band and vegetation type (these
are defined in full_energy before the routine is called).
modifications:
10-06-00 modified to handle partial snow cover KAC
10-31-00 modified to iterate a solution for the exchange of
energy between the snowpack and the ground surface. KAC
11-18-02 modified to add the effects of blowing snow. LCB
02-07-03 fixed indexing problem for sub-daily snow model within
daily water balance VIC: hour (now hidx) is incremented
by 1 rather than the sub-daily time step, so the atmospheric
forcing data is now properly indexed. KAC
04-23-03 Indexing fix sent SNOW_STEP to calc_surf_energy_bal rather
than the model time step, meaning that without snow the
evaporation was computed for SNOW_STEP hours rather than a
full day. This was fixed by introducing step_inc to
index the arrays, while step_dt keeps track of the correct
time step. KAC
10-May-04 Fixed initialization of canopyevap to initialize for every
value of dist, rather than just dist 0. TJB
16-Jul-04 Added variables store_blowing_flux and store_surface_flux
so that surface_flux and blowing_flux are calculated
correctly over a model time step. TJB
16-Jul-04 Moved calculation of blowing_flux from this function
into latent_heat_from_snow(). TJB
05-Aug-04 Moved calculation of blowing_flux back into this function
from latent_heat_from_snow(). Updated arg lists to
calc_surf_energy_bal() and solve_snow() accordingly. TJB
28-Sep-04 Added aero_resist_used to store the aerodynamic resistance
used in flux calculations. TJB
04-Oct-04 Merged with Laura Bowling's updated lake model code. TJB
2006-Sep-23 Implemented flexible output configuration; moved tracking
of rain and snow for output to this function. TJB
2006-Sep-26 Moved tracking of out_rain and out_snow to solve_snow.c. TJB
2006-Dec-20 Modified iteration loop variables to be more intuitive. TJB
2007-Apr-04 Modified to handle grid cell errors by returning to the
main subroutine, rather than ending the simulation. GCT/KAC
24-Apr-07 Features included for IMPLICIT frozen soils option. JCA
(passing nrecs to calc_surf_energy_bal)
2007-Jul-03 Added iter_snow, iter_bare_energy, and iter_snow_energy
structures so that canopy/understory iterations don't
reset step_snow, etc. This fixes a bug involving large
water balance errors when model step = daily and snow
step = sub-daily. TJB
2007-Aug-17 Added features for EXCESS_ICE option. JCA
2008-May-05 Changed moist from a scalar to an array (moist0). Previously,
when options.SNOW_BAND > 1, the value of moist computed
for earlier bands was always overwritten by the value
of moist computed for the final band (even if the final
band had 0 area). KAC via TJB
2008-Oct-23 In call to CalcBlowing(), replaced
veg_lib[iveg].displacement[dmy[rec].month-1] and
veg_lib[iveg].roughness[dmy[rec].month-1] with
*displacement and *roughness. LCB via TJB
2009-Jan-16 Modified aero_resist_used and Ra_used to become arrays of
two elements (surface and overstory); added
options.AERO_RESIST_CANSNOW. TJB
2009-May-17 Added asat to cell_data. TJB
2009-May-20 Changed "bare_*" to "soil_*", to make it clearer that
these data structures refer to the energy balance at the
soil surface, regardless of whether the surface is covered
by snow or some veg or is totally bare. TJB
2009-Jun-09 Modified to use extension of veg_lib structure to contain
bare soil information. TJB
2009-Jun-09 Added call to compute_pot_evap() to compute potential
evaporation for various land cover types. TJB
2009-Jun-09 Cell_data structure now only stores final aero_resist
values (called "aero_resist"). Preliminary uncorrected
aerodynamic resistances for current vegetation and various
reference land cover types for use in potential evap
calculations is stored in temporary array aero_resist. TJB
2009-Jun-19 Added T flag to indicate whether TFALLBACK occurred. TJB
2009-Jun-26 Simplified argument list of runoff() by passing all cell_data
variables via a single reference to the cell data structure. TJB
2009-Sep-19 Added T fbcount to count TFALLBACK occurrences. TJB
2009-Nov-15 Removed ice0 and moist0 from argument list of solve_snow,
since they are never used. TJB
2010-Apr-24 Added logic to handle case when aero_cond or aero_resist
are very large or 0. TJB
2010-Apr-26 Simplified argument lists for solve_snow() and
snow_intercept(). TJB
2011-May-31 Removed options.GRND_FLUX. TJB
2012-Jan-16 Removed LINK_DEBUG code BN
2012-Oct-25 Now call calc_atmos_energy_bal() whenever there is a canopy
with snow, regardless of the setting of CLOSE_ENERGY. CL via TJB
2013-Jul-25 Added photosynthesis terms. TJB
2013-Jul-25 Added soil carbon terms. TJB
2013-Dec-26 Moved CLOSE_ENERGY from compile-time to run-time options. TJB
2013-Dec-26 Removed EXCESS_ICE option. TJB
2013-Dec-27 Moved SPATIAL_FROST to options_struct. TJB
2014-Mar-28 Removed DIST_PRCP option. TJB
2014-Apr-25 Added non-climatological veg parameters. TJB
2014-Apr-25 Added partial vegcover fraction. TJB
**********************************************************************/
{
extern veg_lib_struct *veg_lib;
extern option_struct options;
double total_store_moist[3];
double step_store_moist[3];
int MAX_ITER_GRND_CANOPY;
int BISECT_OVER;
int BISECT_UNDER;
int ErrorFlag;
int INCLUDE_SNOW = FALSE;
int UNSTABLE_CNT;
int UNSTABLE_SNOW = FALSE;
int N_steps;
int UnderStory;
int hidx; // index of initial element of atmos array
int step_inc; // number of atmos array elements to skip per surface fluxes step
int endhidx; // index of final element of atmos array
int step_dt; // time length of surface fluxes step
int lidx;
int over_iter;
int under_iter;
int p,q;
double Evap;
double Ls;
double LongUnderIn; // inmoing LW to ground surface
double LongUnderOut; // outgoing LW from ground surface
double NetLongSnow; // net LW over snowpack
double NetShortSnow; // net SW over understory
double NetShortGrnd; // net SW over snow-free surface
double OldTSurf; // previous snow surface temperature
double ShortUnderIn; // incoming SW to understory
double Tair; // air temperature
double Tcanopy; // canopy air temperature
double Tgrnd; // soil surface temperature
double Tsurf; // ground surface temperature
double VPDcanopy; // vapor pressure deficit in canopy/atmos
double VPcanopy; // vapor pressure in canopy/atmos
double coverage; // mid-step snow cover fraction
double delta_coverage; // change in snow cover fraction
double delta_snow_heat; // change in snowpack heat storage
double last_Tcanopy;
double last_Tgrnd;
double last_Tsurf;
double last_latent_ground_heat;
double last_snow_coverage; // previous snow covered area
double last_snow_flux;
double last_tol_under; // previous surface iteration tol
double last_tol_over; // previous overstory iteration tol
double latent_ground_heat; // latent heat from understory
double ppt; // precipitation/melt reaching soil surface
double rainfall; // rainfall
double snowfall; // snowfall
double snow_flux; // heat flux through snowpack
double snow_grnd_flux; // ground heat flux into snowpack
double tol_under;
double tol_over;
double *aero_resist_used;
double *baseflow;
double *asat;
double *pot_evap;
double *inflow;
layer_data_struct *layer;
// Step-specific quantities
double step_Evap;
double step_Wdew;
double step_melt;
double step_melt_energy; /* energy used to reduce snow coverage */
double step_out_prec;
double step_out_rain;
double step_out_snow;
double step_ppt;
double step_prec;
double **step_aero_resist;
// Quantities that need to be summed or averaged over multiple snow steps
// energy structure
double store_AlbedoOver;
double store_AlbedoUnder;
double store_AtmosLatent;
double store_AtmosLatentSub;
double store_AtmosSensible;
double store_LongOverIn;
double store_LongUnderIn;
double store_LongUnderOut;
double store_NetLongAtmos;
double store_NetLongOver;
double store_NetLongUnder;
double store_NetShortAtmos;
double store_NetShortGrnd;
double store_NetShortOver;
double store_NetShortUnder;
double store_ShortOverIn;
double store_ShortUnderIn;
double store_advected_sensible;
double store_advection;
double store_canopy_advection;
double store_canopy_latent;
double store_canopy_latent_sub;
double store_canopy_sensible;
double store_canopy_refreeze;
double store_deltaCC;
double store_deltaH;
double store_fusion;
double store_grnd_flux;
double store_latent;
double store_latent_sub;
double store_melt_energy;
double store_refreeze_energy;
double store_sensible;
double store_snow_flux;
// snow structure
double store_canopy_vapor_flux;
double store_melt;
double store_vapor_flux;
double store_blowing_flux;
double store_surface_flux;
// veg_var structure
double store_canopyevap;
double store_throughfall;
// cell structure
double store_layerevap[MAX_LAYERS];
double store_ppt;
double store_aero_cond_used[2];
double store_pot_evap[N_PET_TYPES];
// Structures holding values for current snow step
energy_bal_struct snow_energy; // energy fluxes at snowpack surface
energy_bal_struct soil_energy; // energy fluxes at soil surface
veg_var_struct snow_veg_var; // veg fluxes/storages in presence of snow
veg_var_struct soil_veg_var; // veg fluxes/storages in soil energy balance
snow_data_struct step_snow;
layer_data_struct step_layer[MAX_LAYERS];
// Structures holding values for current iteration
energy_bal_struct iter_snow_energy; // energy fluxes at snowpack surface
energy_bal_struct iter_soil_energy; // energy fluxes at soil surface
veg_var_struct iter_snow_veg_var; // veg fluxes/storages in presence of snow
veg_var_struct iter_soil_veg_var; // veg fluxes/storages in soil energy balance
snow_data_struct iter_snow;
layer_data_struct iter_layer[MAX_LAYERS];
double iter_aero_resist[3];
double iter_aero_resist_used[2];
double stability_factor[2];
double iter_pot_evap[N_PET_TYPES];
// handle bisection of understory solution
double store_tol_under;
double A_tol_under;
double B_tol_under;
double A_snow_flux;
double B_snow_flux;
// handle bisection of overstory solution
double store_tol_over;
double A_tol_over;
double B_tol_over;
double A_Tcanopy;
double B_Tcanopy;
// Carbon cycling
double dryFrac;
double *LAIlayer;
double *faPAR;
int cidx;
double store_gc;
double *store_gsLayer;
double store_Ci;
double store_GPP;
double store_Rdark;
double store_Rphoto;
double store_Rmaint;
double store_Rgrowth;
double store_Raut;
double store_NPP;
if (options.CLOSE_ENERGY)
MAX_ITER_GRND_CANOPY = 10;
else
MAX_ITER_GRND_CANOPY = 0;
if (options.CARBON) {
store_gsLayer = (double*)calloc(options.Ncanopy,sizeof(double));
}
/***********************************************************************
Set temporary variables for convenience
***********************************************************************/
aero_resist_used = cell->aero_resist;
baseflow = &(cell->baseflow);
asat = &(cell->asat);
pot_evap = cell->pot_evap;
inflow = &(cell->inflow);
layer = cell->layer;
step_aero_resist = (double**)calloc(N_PET_TYPES,sizeof(double*));
for (p=0; p<N_PET_TYPES; p++) {
step_aero_resist[p] = (double*)calloc(2,sizeof(double));
}
/***********************************************************************
Set temporary variables - preserves original values until iterations
are completed
***********************************************************************/
energy->advection = 0;
energy->deltaCC = 0;
if ( snow->swq > 0 ) {
snow_flux = energy->snow_flux;
}
else
snow_flux = -(energy->grnd_flux + energy->deltaH + energy->fusion);
energy->refreeze_energy = 0;
coverage = snow->coverage;
snow_energy = (*energy);
soil_energy = (*energy);
snow_veg_var = (*veg_var);
soil_veg_var = (*veg_var);
step_snow = (*snow);
for ( lidx = 0; lidx < Nlayers; lidx++ ) {
step_layer[lidx] = layer[lidx];
}
for ( lidx = 0; lidx < Nlayers; lidx++ ) {
step_layer[lidx].evap = 0;
}
soil_veg_var.canopyevap = 0;
snow_veg_var.canopyevap = 0;
soil_veg_var.throughfall = 0;
snow_veg_var.throughfall = 0;
/********************************
Set-up sub-time step controls
(May eventually want to set this up so that it is also true
if frozen soils are present)
********************************/
if(snow->swq > 0 || snow->snow_canopy > 0 || atmos->snowflag[NR]) {
hidx = 0;
step_inc = 1;
endhidx = hidx + NF;
step_dt = options.SNOW_STEP;
}
else {
hidx = NR;
step_inc = 1;
endhidx = hidx + step_inc;
step_dt = gp->dt;
}
/*******************************************
Initialize sub-model time step variables
*******************************************/
// energy structure
store_AlbedoOver = 0;
store_AlbedoUnder = 0;
store_AtmosLatent = 0;
store_AtmosLatentSub = 0;
store_AtmosSensible = 0;
store_LongOverIn = 0;
store_LongUnderIn = 0;
store_LongUnderOut = 0;
store_NetLongAtmos = 0;
store_NetLongOver = 0;
store_NetLongUnder = 0;
store_NetShortAtmos = 0;
store_NetShortGrnd = 0;
store_NetShortOver = 0;
store_NetShortUnder = 0;
store_ShortOverIn = 0;
store_ShortUnderIn = 0;
store_advected_sensible = 0;
store_advection = 0;
store_canopy_advection = 0;
store_canopy_latent = 0;
store_canopy_latent_sub = 0;
store_canopy_sensible = 0;
store_canopy_refreeze = 0;
store_deltaCC = 0;
store_deltaH = 0;
store_fusion = 0;
store_grnd_flux = 0;
store_latent = 0;
store_latent_sub = 0;
store_melt_energy = 0;
store_refreeze_energy = 0;
store_sensible = 0;
store_snow_flux = 0;
// snow structure
last_snow_coverage = snow->coverage;
store_canopy_vapor_flux = 0;
store_melt = 0;
store_vapor_flux = 0;
store_surface_flux = 0;
store_blowing_flux = 0;
// veg_var and cell structures
store_throughfall = 0.;
store_canopyevap = 0.;
for ( lidx = 0; lidx < options.Nlayer; lidx++ ) {
store_layerevap[lidx] = 0.;
}
step_Wdew = veg_var->Wdew;
// misc
store_ppt = 0;
store_aero_cond_used[0] = 0;
store_aero_cond_used[1] = 0;
(*snow_inflow) = 0;
for (p=0; p<N_PET_TYPES; p++)
store_pot_evap[p] = 0;
N_steps = 0;
// Carbon cycling
if (options.CARBON) {
store_gc = 0;
for (cidx=0; cidx<options.Ncanopy; cidx++) {
store_gsLayer[cidx] = 0;
}
store_Ci = 0;
store_GPP = 0;
store_Rdark = 0;
store_Rphoto = 0;
store_Rmaint = 0;
store_Rgrowth = 0;
store_Raut = 0;
store_NPP = 0;
}
/*************************
Compute surface fluxes
*************************/
do {
/** Solve energy balance for all sub-model time steps **/
/* set air temperature and precipitation for this snow band */
Tair = atmos->air_temp[hidx] + soil_con->Tfactor[band];
step_prec = atmos->prec[hidx] * soil_con->Pfactor[band];
// initialize ground surface temperaure
Tgrnd = energy->T[0];
// initialize canopy terms
Tcanopy = Tair;
VPcanopy = atmos->vp[hidx];
VPDcanopy = atmos->vpd[hidx];
over_iter = 0;
tol_over = 999;
last_Tcanopy = 999;
last_snow_flux = 999;
// compute LAI and absorbed PAR per canopy layer
if (options.CARBON && iveg < Nveg) {
LAIlayer = (double *)calloc(options.Ncanopy,sizeof(double));
faPAR = (double *)calloc(options.Ncanopy,sizeof(double));
/* Compute absorbed PAR per ground area per canopy layer (W/m2)
normalized to PAR = 1 W, i.e. the canopy albedo in the PAR
range (alb_total ~ 0.45*alb_par + 0.55*alb_other) */
faparl(CanopLayerBnd,
veg_var->LAI,
soil_con->AlbedoPar,
atmos->coszen[hidx],
atmos->fdir[hidx],
LAIlayer,
faPAR);
/* Convert to absolute (unnormalized) absorbed PAR per leaf area per canopy layer
(umol(photons)/m2 leaf area / s); dividing by Epar converts PAR from W to umol(photons)/s */
veg_var->aPAR = 0;
for (cidx=0; cidx<options.Ncanopy; cidx++) {
if (LAIlayer[cidx] > 1e-10) {
veg_var->aPARLayer[cidx] = (atmos->par[hidx]/Epar) * faPAR[cidx] / LAIlayer[cidx];
veg_var->aPAR += atmos->par[hidx] * faPAR[cidx] / LAIlayer[cidx];
}
else {
veg_var->aPARLayer[cidx] = atmos->par[hidx]/Epar * faPAR[cidx] / 1e-10;
veg_var->aPAR += atmos->par[hidx] * faPAR[cidx] / 1e-10;
}
}
free((char*)LAIlayer);
free((char*)faPAR);
}
// initialize bisection startup
BISECT_OVER = FALSE;
A_tol_over = 999;
B_tol_over = 999;
// Compute mass flux of blowing snow
if( !overstory && options.BLOWING && step_snow.swq > 0.) {
Ls = (677. - 0.07 * step_snow.surf_temp) * JOULESPCAL * GRAMSPKG;
step_snow.blowing_flux = CalcBlowingSnow((double) step_dt, Tair,
step_snow.last_snow, step_snow.surf_water,
wind[2], Ls, atmos->density[hidx],
atmos->pressure[hidx],
atmos->vp[hidx], roughness[2],
ref_height[2], step_snow.depth,
lag_one, sigma_slope,
step_snow.surf_temp, iveg, Nveg, fetch,
displacement[1], roughness[1],
&step_snow.transport);
if ( (int)step_snow.blowing_flux == ERROR ) {
return ( ERROR );
}
step_snow.blowing_flux*=step_dt*SECPHOUR/RHO_W; /* m/time step */
}
else
step_snow.blowing_flux = 0.0;
do {
/** Iterate for overstory solution **/
over_iter++;
last_tol_over = tol_over;
under_iter = 0;
tol_under = 999;
UnderStory = 999;
UNSTABLE_CNT = 0;
// bisect understory
BISECT_UNDER = FALSE;
A_tol_under = 999;
B_tol_under = 999;
store_tol_under = 999;
A_tol_over = 999;
B_tol_over = 999;
store_tol_over = 999;
do {
/** Iterate for understory solution - itererates to find snow flux **/
under_iter++;
last_tol_under = tol_under;
if ( last_Tcanopy != 999 ) Tcanopy = (last_Tcanopy + Tcanopy) / 2.;
last_Tcanopy = Tcanopy;
A_tol_over = store_tol_over;
A_Tcanopy = Tcanopy;
// update understory energy balance terms for iteration
if ( last_snow_flux != 999 ) {
if ( ( fabs(store_tol_under) > fabs(A_tol_under)
&& A_tol_under != 999
&& fabs(store_tol_under - A_tol_under) > 1. )
|| tol_under < 0 ) { // stepped the correct way
UNSTABLE_CNT++;
if ( UNSTABLE_CNT > 3 || tol_under < 0 )
UNSTABLE_SNOW = TRUE;
}
else if ( !INCLUDE_SNOW ) { // stepped the wrong way
snow_flux = (last_snow_flux + iter_soil_energy.snow_flux) / 2.;
}
}
last_snow_flux = snow_flux;
A_tol_under = store_tol_under;
A_snow_flux = snow_flux;
snow_grnd_flux = -snow_flux;
// Initialize structures for new iteration
iter_snow_energy = snow_energy;
iter_soil_energy = soil_energy;
iter_snow_veg_var = snow_veg_var;
iter_soil_veg_var = soil_veg_var;
iter_snow = step_snow;
for ( lidx = 0; lidx < Nlayers; lidx++ ) {
iter_layer[lidx] = step_layer[lidx];
}
iter_snow_veg_var.Wdew = step_Wdew;
iter_soil_veg_var.Wdew = step_Wdew;
iter_snow_veg_var.canopyevap = 0;
iter_soil_veg_var.canopyevap = 0;
for ( lidx = 0; lidx < Nlayers; lidx ++ )
iter_layer[lidx].evap = 0;
for (q=0; q<3; q++) {
iter_aero_resist[q] = aero_resist[N_PET_TYPES][q];
}
iter_aero_resist_used[0] = aero_resist_used[0];
iter_aero_resist_used[1] = aero_resist_used[1];
iter_snow.canopy_vapor_flux = 0;
iter_snow.vapor_flux = 0;
iter_snow.surface_flux = 0;
/* iter_snow.blowing_flux has already been reset to step_snow.blowing_flux */
LongUnderOut = iter_soil_energy.LongUnderOut;
dryFrac = -1;
/** Solve snow accumulation, ablation and interception **/
step_melt = solve_snow(overstory, BareAlbedo, LongUnderOut,
gp->MIN_RAIN_TEMP, gp->MAX_SNOW_TEMP,
Tcanopy, Tgrnd, Tair, dp,
step_prec, snow_grnd_flux, gp->wind_h,
&energy->AlbedoUnder, &step_Evap, Le,
&LongUnderIn, &NetLongSnow, &NetShortGrnd,
&NetShortSnow, &ShortUnderIn, &OldTSurf,
iter_aero_resist, iter_aero_resist_used,
&coverage, &delta_coverage,
&delta_snow_heat, displacement,
gauge_correction, &step_melt_energy,
&step_out_prec, &step_out_rain, &step_out_snow,
&step_ppt, &rainfall, ref_height,
roughness, snow_inflow, &snowfall, &surf_atten,
wind, root, UNSTABLE_SNOW, options.Nnode,
Nveg, iveg, band, step_dt, rec, hidx, veg_class,
&UnderStory, CanopLayerBnd, &dryFrac,
dmy, atmos, &(iter_snow_energy),
iter_layer, &(iter_snow),
soil_con,
&(iter_snow_veg_var));
// iter_snow_energy.sensible + iter_snow_energy.latent + iter_snow_energy.latent_sub + NetShortSnow + NetLongSnow + ( snow_grnd_flux + iter_snow_energy.advection - iter_snow_energy.deltaCC + iter_snow_energy.refreeze_energy + iter_snow_energy.advected_sensible ) * step_snow.coverage
if ( step_melt == ERROR ) return (ERROR);
/* Check that the snow surface temperature was estimated, if not
prepare to include thin snowpack in the estimation of the
snow-free surface energy balance */
if ( ( iter_snow.surf_temp == 999 || UNSTABLE_SNOW )
&& iter_snow.swq > 0 ) {
INCLUDE_SNOW = UnderStory + 1;
iter_soil_energy.advection = iter_snow_energy.advection;
iter_snow.surf_temp = step_snow.surf_temp;
step_melt_energy = 0;
}
else {
INCLUDE_SNOW = FALSE;
}
/**************************************************
Solve Energy Balance Components at Soil Surface
**************************************************/
Tsurf = calc_surf_energy_bal((*Le), LongUnderIn, NetLongSnow,
NetShortGrnd, NetShortSnow, OldTSurf,
ShortUnderIn, iter_snow.albedo,
iter_snow_energy.latent,
iter_snow_energy.latent_sub,
iter_snow_energy.sensible,
Tcanopy, VPDcanopy,
VPcanopy, iter_snow_energy.advection,
step_snow.coldcontent, delta_coverage, dp,
ice0, step_melt_energy, moist0,
iter_snow.coverage,
(step_snow.depth + iter_snow.depth) / 2.,
BareAlbedo, surf_atten,
iter_snow.vapor_flux,
iter_aero_resist, iter_aero_resist_used,
displacement, &step_melt, &step_ppt,
rainfall, ref_height, roughness,
snowfall, wind, root, INCLUDE_SNOW,
UnderStory, options.Nnode, Nveg, band,
step_dt, hidx, iveg, options.Nlayer,
(int)overstory, rec, veg_class,
CanopLayerBnd, &dryFrac, atmos,
&(dmy[rec]), &iter_soil_energy,
iter_layer,
&(iter_snow), soil_con,
&iter_soil_veg_var, gp->nrecs);
if ( (int)Tsurf == ERROR ) {
// Return error flag to skip rest of grid cell
return ( ERROR );
}
if ( INCLUDE_SNOW ) {
/* store melt from thin snowpack */
step_ppt += step_melt;
}
/*****************************************
Compute energy balance with atmosphere
*****************************************/
if ( iter_snow.snow && overstory ) {
// do this if overstory is active and energy balance is closed
Tcanopy = calc_atmos_energy_bal(iter_snow_energy.canopy_sensible,
iter_soil_energy.sensible,
iter_snow_energy.canopy_latent,
iter_soil_energy.latent,
iter_snow_energy.canopy_latent_sub,
iter_soil_energy.latent_sub,
(*Le),
iter_snow_energy.NetLongOver,
iter_soil_energy.NetLongUnder,
iter_snow_energy.NetShortOver,
iter_soil_energy.NetShortUnder,
iter_aero_resist_used[1], Tair,
atmos->density[hidx],
atmos->vp[hidx], atmos->vpd[hidx],
&iter_soil_energy.AtmosError,
&iter_soil_energy.AtmosLatent,
&iter_soil_energy.AtmosLatentSub,
&iter_soil_energy.NetLongAtmos,
&iter_soil_energy.NetShortAtmos,
&iter_soil_energy.AtmosSensible,
&VPcanopy, &VPDcanopy,
&iter_soil_energy.Tcanopy_fbflag,
&iter_soil_energy.Tcanopy_fbcount);
/* iterate to find Tcanopy which will solve the atmospheric energy
balance. Since I do not know vp in the canopy, use the
sum of latent heats from the ground and foliage, and iterate
on the temperature used for the sensible heat flux from the
canopy air to the mixing level */
if ( (int)Tcanopy == ERROR ) {
// Return error flag to skip rest of grid cell
return ( ERROR );
}
}
else {
// else put surface fluxes into atmospheric flux storage so that
// the model will continue to function
iter_soil_energy.AtmosLatent = iter_soil_energy.latent;
iter_soil_energy.AtmosLatentSub = iter_soil_energy.latent_sub;
iter_soil_energy.AtmosSensible = iter_soil_energy.sensible;
iter_soil_energy.NetLongAtmos = iter_soil_energy.NetLongUnder;
iter_soil_energy.NetShortAtmos = iter_soil_energy.NetShortUnder;
}
iter_soil_energy.Tcanopy = Tcanopy;
iter_snow_energy.Tcanopy = Tcanopy;
/*****************************************
Compute iteration tolerance statistics
*****************************************/
// compute understory tolerance
if ( INCLUDE_SNOW || ( iter_snow.swq == 0 && delta_coverage == 0 ) ) {
store_tol_under = 0;
tol_under = 0;
}
else {
store_tol_under = snow_flux - iter_soil_energy.snow_flux;
tol_under = fabs(store_tol_under);
}
if ( fabs( tol_under - last_tol_under ) < GRND_TOL && tol_under > 1. )
tol_under = -999;
// compute overstory tolerance
if ( overstory && iter_snow.snow ) {
store_tol_over = Tcanopy - last_Tcanopy;
tol_over = fabs( store_tol_over );
}
else {
store_tol_over = 0;
tol_over = 0;
}
} while ( ( fabs( tol_under - last_tol_under ) > GRND_TOL )
&& ( tol_under != 0 ) && (under_iter < MAX_ITER_GRND_CANOPY) );
} while ( ( fabs( tol_over - last_tol_over ) > OVER_TOL
&& overstory ) && ( tol_over != 0 )
&& (over_iter < MAX_ITER_GRND_CANOPY) );
/**************************************
Compute GPP, Raut, and NPP
**************************************/
if (options.CARBON) {
if (iveg < Nveg && !step_snow.snow && dryFrac > 0) {
canopy_assimilation(veg_lib[veg_class].Ctype,
veg_lib[veg_class].MaxCarboxRate,
veg_lib[veg_class].MaxETransport,
veg_lib[veg_class].CO2Specificity,
iter_soil_veg_var.NscaleFactor,
Tair,
atmos->shortwave[hidx],
iter_soil_veg_var.aPARLayer,
soil_con->elevation,
atmos->Catm[hidx],
CanopLayerBnd,
veg_var->LAI,
"rs",
iter_soil_veg_var.rsLayer,
&(iter_soil_veg_var.rc),
&(iter_soil_veg_var.Ci),
&(iter_soil_veg_var.GPP),
&(iter_soil_veg_var.Rdark),
&(iter_soil_veg_var.Rphoto),
&(iter_soil_veg_var.Rmaint),
&(iter_soil_veg_var.Rgrowth),
&(iter_soil_veg_var.Raut),
&(iter_soil_veg_var.NPP));
/* Adjust by fraction of canopy that was dry and account for any other inhibition`*/
dryFrac *= iter_soil_veg_var.NPPfactor;
iter_soil_veg_var.GPP *= dryFrac;
iter_soil_veg_var.Rdark *= dryFrac;
iter_soil_veg_var.Rphoto *= dryFrac;
iter_soil_veg_var.Rmaint *= dryFrac;
iter_soil_veg_var.Rgrowth *= dryFrac;
iter_soil_veg_var.Raut *= dryFrac;
iter_soil_veg_var.NPP *= dryFrac;
/* Adjust by veg cover fraction */
iter_soil_veg_var.GPP *= iter_soil_veg_var.vegcover;
iter_soil_veg_var.Rdark *= iter_soil_veg_var.vegcover;
iter_soil_veg_var.Rphoto *= iter_soil_veg_var.vegcover;
iter_soil_veg_var.Rmaint *= iter_soil_veg_var.vegcover;
iter_soil_veg_var.Rgrowth *= iter_soil_veg_var.vegcover;
iter_soil_veg_var.Raut *= iter_soil_veg_var.vegcover;
iter_soil_veg_var.NPP *= iter_soil_veg_var.vegcover;
}
else {
iter_soil_veg_var.rc = HUGE_RESIST;
for (cidx=0; cidx<options.Ncanopy; cidx++)
iter_soil_veg_var.rsLayer[cidx] = HUGE_RESIST;
iter_soil_veg_var.Ci = 0;
iter_soil_veg_var.GPP = 0;
iter_soil_veg_var.Rdark = 0;
iter_soil_veg_var.Rphoto = 0;
iter_soil_veg_var.Rmaint = 0;
iter_soil_veg_var.Rgrowth = 0;
iter_soil_veg_var.Raut = 0;
iter_soil_veg_var.NPP = 0;
}
}
/**************************************
Compute Potential Evap
**************************************/
// First, determine the stability correction used in the iteration
if (iter_aero_resist_used[0] == HUGE_RESIST)
stability_factor[0] = HUGE_RESIST;
else
stability_factor[0] = iter_aero_resist_used[0]/aero_resist[N_PET_TYPES][UnderStory];
if (iter_aero_resist_used[1] == iter_aero_resist_used[0])
stability_factor[1] = stability_factor[0];
else {
if (iter_aero_resist_used[1] == HUGE_RESIST)
stability_factor[1] = HUGE_RESIST;
else
stability_factor[1] = iter_aero_resist_used[1]/aero_resist[N_PET_TYPES][1];
}
// Next, loop over pot_evap types and apply the correction to the relevant aerodynamic resistance
for (p=0; p<N_PET_TYPES; p++) {
if (stability_factor[0] == HUGE_RESIST)
step_aero_resist[p][0] = HUGE_RESIST;
else
step_aero_resist[p][0] = aero_resist[p][UnderStory]*stability_factor[0];
if (stability_factor[1] == HUGE_RESIST)
step_aero_resist[p][1] = HUGE_RESIST;
else
step_aero_resist[p][1] = aero_resist[p][1]*stability_factor[1];
}
// Finally, compute pot_evap
compute_pot_evap(veg_class, dmy, rec, gp->dt, atmos->shortwave[hidx], iter_soil_energy.NetLongAtmos, Tair, VPDcanopy, soil_con->elevation, step_aero_resist, iter_pot_evap);
/**************************************
Store sub-model time step variables
**************************************/
snow_energy = iter_snow_energy;
soil_energy = iter_soil_energy;
snow_veg_var = iter_snow_veg_var;
soil_veg_var = iter_soil_veg_var;
step_snow = iter_snow;
for(lidx = 0; lidx < options.Nlayer; lidx++) {
step_layer[lidx] = iter_layer[lidx];
}
if(iveg != Nveg) {
if(step_snow.snow) {
store_throughfall += snow_veg_var.throughfall;
store_canopyevap += snow_veg_var.canopyevap;
soil_veg_var.Wdew = snow_veg_var.Wdew;
}
else {
store_throughfall += soil_veg_var.throughfall;
store_canopyevap += soil_veg_var.canopyevap;
snow_veg_var.Wdew = soil_veg_var.Wdew;
}
step_Wdew = soil_veg_var.Wdew;
if (options.CARBON) {
store_gc += 1/soil_veg_var.rc;
for (cidx=0; cidx<options.Ncanopy; cidx++) {
store_gsLayer[cidx] += 1/soil_veg_var.rsLayer[cidx];
}
store_Ci += soil_veg_var.Ci;
store_GPP += soil_veg_var.GPP;
store_Rdark += soil_veg_var.Rdark;
store_Rphoto += soil_veg_var.Rphoto;
store_Rmaint += soil_veg_var.Rmaint;
store_Rgrowth += soil_veg_var.Rgrowth;
store_Raut += soil_veg_var.Raut;
store_NPP += soil_veg_var.NPP;
}
}
for(lidx = 0; lidx < options.Nlayer; lidx++)
store_layerevap[lidx] += step_layer[lidx].evap;
store_ppt += step_ppt;
if (iter_aero_resist_used[0]>0)
store_aero_cond_used[0] += 1/iter_aero_resist_used[0];
else
store_aero_cond_used[0] += HUGE_RESIST;
if (iter_aero_resist_used[1]>0)
store_aero_cond_used[1] += 1/iter_aero_resist_used[1];
else
store_aero_cond_used[1] += HUGE_RESIST;
if(iveg != Nveg)
store_canopy_vapor_flux += step_snow.canopy_vapor_flux;
store_melt += step_melt;
store_vapor_flux += step_snow.vapor_flux;
store_surface_flux += step_snow.surface_flux;
store_blowing_flux += step_snow.blowing_flux;
out_prec[0] += step_out_prec;
out_rain[0] += step_out_rain;
out_snow[0] += step_out_snow;
if ( INCLUDE_SNOW ) {
/* copy needed flux terms to the snowpack */
snow_energy.advected_sensible = soil_energy.advected_sensible;
snow_energy.advection = soil_energy.advection;
snow_energy.deltaCC = soil_energy.deltaCC;
snow_energy.latent = soil_energy.latent;
snow_energy.latent_sub = soil_energy.latent_sub;
snow_energy.refreeze_energy = soil_energy.refreeze_energy;
snow_energy.sensible = soil_energy.sensible;
snow_energy.snow_flux = soil_energy.snow_flux;
}
store_AlbedoOver += snow_energy.AlbedoOver;
store_AlbedoUnder += soil_energy.AlbedoUnder;
store_AtmosLatent += soil_energy.AtmosLatent;
store_AtmosLatentSub += soil_energy.AtmosLatentSub;
store_AtmosSensible += soil_energy.AtmosSensible;
store_LongOverIn += snow_energy.LongOverIn;
store_LongUnderIn += LongUnderIn;
store_LongUnderOut += soil_energy.LongUnderOut;
store_NetLongAtmos += soil_energy.NetLongAtmos;
store_NetLongOver += snow_energy.NetLongOver;
store_NetLongUnder += soil_energy.NetLongUnder;
store_NetShortAtmos += soil_energy.NetShortAtmos;
store_NetShortGrnd += NetShortGrnd;
store_NetShortOver += snow_energy.NetShortOver;
store_NetShortUnder += soil_energy.NetShortUnder;
store_ShortOverIn += snow_energy.ShortOverIn;
store_ShortUnderIn += soil_energy.ShortUnderIn;
store_canopy_advection += snow_energy.canopy_advection;
store_canopy_latent += snow_energy.canopy_latent;
store_canopy_latent_sub += snow_energy.canopy_latent_sub;
store_canopy_sensible += snow_energy.canopy_sensible;
store_canopy_refreeze += snow_energy.canopy_refreeze;
store_deltaH += soil_energy.deltaH;
store_fusion += soil_energy.fusion;
store_grnd_flux += soil_energy.grnd_flux;
store_latent += soil_energy.latent;
store_latent_sub += soil_energy.latent_sub;
store_melt_energy += step_melt_energy;
store_sensible += soil_energy.sensible;
if ( step_snow.swq == 0 && INCLUDE_SNOW ) {
if ( last_snow_coverage == 0 && step_prec > 0 ) last_snow_coverage = 1;
store_advected_sensible += snow_energy.advected_sensible * last_snow_coverage;
store_advection += snow_energy.advection * last_snow_coverage;
store_deltaCC += snow_energy.deltaCC * last_snow_coverage;
store_snow_flux += soil_energy.snow_flux * last_snow_coverage;
store_refreeze_energy += snow_energy.refreeze_energy * last_snow_coverage;
}
else if ( step_snow.snow || INCLUDE_SNOW ) {
store_advected_sensible += snow_energy.advected_sensible * (step_snow.coverage + delta_coverage);
store_advection += snow_energy.advection * (step_snow.coverage + delta_coverage);
store_deltaCC += snow_energy.deltaCC * (step_snow.coverage + delta_coverage);
store_snow_flux += soil_energy.snow_flux * (step_snow.coverage + delta_coverage);
store_refreeze_energy += snow_energy.refreeze_energy * (step_snow.coverage + delta_coverage);
}
for (p=0; p<N_PET_TYPES; p++)
store_pot_evap[p] += iter_pot_evap[p];
/* increment time step */
N_steps ++;
hidx += step_inc;
} while (hidx < endhidx);
/************************************************
Store snow variables for sub-model time steps
************************************************/
(*snow) = step_snow;
snow->vapor_flux = store_vapor_flux;
snow->blowing_flux = store_blowing_flux;
snow->surface_flux = store_surface_flux;
snow->canopy_vapor_flux = store_canopy_vapor_flux;
(*Melt) = store_melt;
snow->melt = store_melt;
ppt = store_ppt;
/******************************************************
Store energy flux averages for sub-model time steps
******************************************************/
(*energy) = soil_energy;
energy->AlbedoOver = store_AlbedoOver / (double)N_steps;
energy->AlbedoUnder = store_AlbedoUnder / (double)N_steps;
energy->AtmosLatent = store_AtmosLatent / (double)N_steps;
energy->AtmosLatentSub = store_AtmosLatentSub / (double)N_steps;
energy->AtmosSensible = store_AtmosSensible / (double)N_steps;
energy->LongOverIn = store_LongOverIn / (double)N_steps;
energy->LongUnderIn = store_LongUnderIn / (double)N_steps;
energy->LongUnderOut = store_LongUnderOut / (double)N_steps;
energy->NetLongAtmos = store_NetLongAtmos / (double)N_steps;
energy->NetLongOver = store_NetLongOver / (double)N_steps;
energy->NetLongUnder = store_NetLongUnder / (double)N_steps;
energy->NetShortAtmos = store_NetShortAtmos / (double)N_steps;
energy->NetShortGrnd = store_NetShortGrnd / (double)N_steps;
energy->NetShortOver = store_NetShortOver / (double)N_steps;
energy->NetShortUnder = store_NetShortUnder / (double)N_steps;
energy->ShortOverIn = store_ShortOverIn / (double)N_steps;
energy->ShortUnderIn = store_ShortUnderIn / (double)N_steps;
energy->advected_sensible = store_advected_sensible / (double)N_steps;
energy->canopy_advection = store_canopy_advection / (double)N_steps;
energy->canopy_latent = store_canopy_latent / (double)N_steps;
energy->canopy_latent_sub = store_canopy_latent_sub / (double)N_steps;
energy->canopy_refreeze = store_canopy_refreeze / (double)N_steps;
energy->canopy_sensible = store_canopy_sensible / (double)N_steps;
energy->deltaH = store_deltaH / (double)N_steps;
energy->fusion = store_fusion / (double)N_steps;
energy->grnd_flux = store_grnd_flux / (double)N_steps;
energy->latent = store_latent / (double)N_steps;
energy->latent_sub = store_latent_sub / (double)N_steps;
energy->melt_energy = store_melt_energy / (double)N_steps;
energy->sensible = store_sensible / (double)N_steps;
if (snow->snow || INCLUDE_SNOW) {
energy->advection = store_advection / (double)N_steps;
energy->deltaCC = store_deltaCC / (double)N_steps;
energy->refreeze_energy = store_refreeze_energy / (double)N_steps;
energy->snow_flux = store_snow_flux / (double)N_steps;
}
energy->Tfoliage = snow_energy.Tfoliage;
energy->Tfoliage_fbflag = snow_energy.Tfoliage_fbflag;
energy->Tfoliage_fbcount = snow_energy.Tfoliage_fbcount;
// energy->AtmosSensible + energy->AtmosLatent + energy->AtmosLatentSub + energy->NetShortAtmos + energy->NetLongAtmos + energy->grnd_flux + energy->deltaH + energy->fusion + energy->advection - energy->deltaCC + energy->refreeze_energy + energy->advected_sensible
/**********************************************************
Store vegetation variable sums for sub-model time steps
**********************************************************/
if(iveg != Nveg) {
veg_var->throughfall = store_throughfall;
veg_var->canopyevap = store_canopyevap;
if(snow->snow) {
veg_var->Wdew = snow_veg_var.Wdew;
}
else {
veg_var->Wdew = soil_veg_var.Wdew;
}
}
/**********************************************************
Store soil layer variables for sub-model time steps
**********************************************************/
for(lidx=0;lidx<Nlayers;lidx++) {
layer[lidx] = step_layer[lidx];
layer[lidx].evap = store_layerevap[lidx];
}
if (store_aero_cond_used[0]>0 && store_aero_cond_used[0]<HUGE_RESIST)
aero_resist_used[0] = 1/(store_aero_cond_used[0]/(double)N_steps);
else if (store_aero_cond_used[0]>=HUGE_RESIST)
aero_resist_used[0] = 0;
else
aero_resist_used[0] = HUGE_RESIST;
if (store_aero_cond_used[1]>0 && store_aero_cond_used[1]<HUGE_RESIST)
aero_resist_used[1] = 1/(store_aero_cond_used[1]/(double)N_steps);
else if (store_aero_cond_used[1]>=HUGE_RESIST)
aero_resist_used[1] = 0;
else
aero_resist_used[1] = HUGE_RESIST;
for (p=0; p<N_PET_TYPES; p++)
pot_evap[p] = store_pot_evap[p]/(double)N_steps;
for (p=0; p<N_PET_TYPES; p++) {
free((char *)step_aero_resist[p]);
}
free((char *)step_aero_resist);
/**********************************************************
Store carbon cycle variable sums for sub-model time steps
**********************************************************/
if(options.CARBON && iveg != Nveg) {
veg_var->rc = 1/store_gc/(double)N_steps;
for (cidx=0; cidx<options.Ncanopy; cidx++) {
veg_var->rsLayer[cidx] = 1/store_gsLayer[cidx]/(double)N_steps;
}
veg_var->Ci = store_Ci/(double)N_steps;
veg_var->GPP = store_GPP/(double)N_steps;
veg_var->Rdark = store_Rdark/(double)N_steps;
veg_var->Rphoto = store_Rphoto/(double)N_steps;
veg_var->Rmaint = store_Rmaint/(double)N_steps;
veg_var->Rgrowth = store_Rgrowth/(double)N_steps;
veg_var->Raut = store_Raut/(double)N_steps;
veg_var->NPP = store_NPP/(double)N_steps;
free((char *)(store_gsLayer));
soil_carbon_balance(soil_con,energy,cell,veg_var);
// Update running total annual NPP
if (veg_var->NPP > 0) veg_var->AnnualNPP += veg_var->NPP*MCg*3600*gp->dt;
}
/********************************************************
Compute Runoff, Baseflow, and Soil Moisture Transport
********************************************************/
(*inflow) = ppt;
ppt += veg_var->irrig;
//fprintf(stdout,"surface_fluxes inflow %f ppt %f veg_varirrig %f\n",(*inflow),ppt,veg_var->irrig);
ErrorFlag = runoff(cell, energy, soil_con, ppt, soil_con->frost_fract,
gp->dt, options.Nnode, band, rec, iveg);
return( ErrorFlag );
}
/******************************************************************************
* @brief This routine computes all surface fluxes
******************************************************************************/
int
surface_fluxes(bool overstory,
double BareAlbedo,
double ice0,
double moist0,
double surf_atten,
double *Melt,
double *Le,
double *aero_resist,
double *displacement,
double *gauge_correction,
double *out_prec,
double *out_rain,
double *out_snow,
double *ref_height,
double *roughness,
double *snow_inflow,
double *wind,
double *root,
size_t Nlayers,
size_t Nveg,
unsigned short band,
double dp,
unsigned short iveg,
unsigned short veg_class,
force_data_struct *force,
dmy_struct *dmy,
energy_bal_struct *energy,
global_param_struct *gp,
cell_data_struct *cell,
snow_data_struct *snow,
soil_con_struct *soil_con,
veg_var_struct *veg_var,
double lag_one,
double sigma_slope,
double fetch,
double *CanopLayerBnd)
{
extern veg_lib_struct *vic_run_veg_lib;
extern option_struct options;
extern parameters_struct param;
int MAX_ITER_GRND_CANOPY;
int ErrorFlag;
int INCLUDE_SNOW = false;
int UNSTABLE_CNT;
int UNSTABLE_SNOW = false;
int N_steps;
int UnderStory;
size_t hidx; // index of initial element of atmos array
size_t step_inc; // number of atmos array elements to skip per surface fluxes step
size_t endhidx; // index of final element of atmos array
double step_dt; // time length of surface fluxes step (in seconds)
size_t lidx;
int over_iter;
int under_iter;
int q;
double Ls;
double LongUnderIn; // inmoing LW to ground surface
double LongUnderOut; // outgoing LW from ground surface
double NetLongSnow; // net LW over snowpack
double NetShortSnow; // net SW over understory
double NetShortGrnd; // net SW over snow-free surface
double OldTSurf; // previous snow surface temperature
double ShortUnderIn; // incoming SW to understory
double Tair; // air temperature
double Tcanopy; // canopy air temperature
double Tgrnd; // soil surface temperature
double Tsurf; // ground surface temperature
double VPDcanopy; // vapor pressure deficit in canopy/atmos
double VPcanopy; // vapor pressure in canopy/atmos
double coverage; // mid-step snow cover fraction
double delta_coverage; // change in snow cover fraction
double delta_snow_heat; // change in snowpack heat storage
double last_Tcanopy;
double last_snow_coverage; // previous snow covered area
double last_snow_flux;
double last_tol_under; // previous surface iteration tol
double last_tol_over; // previous overstory iteration tol
double ppt; // precipitation/melt reaching soil surface
double rainfall; // rainfall
double snowfall; // snowfall
double snow_flux; // heat flux through snowpack
double snow_grnd_flux; // ground heat flux into snowpack
double tol_under;
double tol_over;
double *aero_resist_used;
double *inflow;
layer_data_struct *layer;
// Step-specific quantities
double step_Wdew;
double step_melt;
double step_melt_energy; /* energy used to reduce snow coverage */
double step_out_prec;
double step_out_rain;
double step_out_snow;
double step_ppt;
double step_prec;
// Quantities that need to be summed or averaged over multiple snow steps
// energy structure
double store_AlbedoOver;
double store_AlbedoUnder;
double store_AtmosLatent;
double store_AtmosLatentSub;
double store_AtmosSensible;
double store_LongOverIn;
double store_LongUnderIn;
double store_LongUnderOut;
double store_NetLongAtmos;
double store_NetLongOver;
double store_NetLongUnder;
double store_NetShortAtmos;
double store_NetShortGrnd;
double store_NetShortOver;
double store_NetShortUnder;
double store_ShortOverIn;
double store_ShortUnderIn;
double store_advected_sensible;
double store_advection;
double store_canopy_advection;
double store_canopy_latent;
double store_canopy_latent_sub;
double store_canopy_sensible;
double store_canopy_refreeze;
double store_deltaCC;
double store_deltaH;
double store_fusion;
double store_grnd_flux;
double store_latent;
double store_latent_sub;
double store_melt_energy;
double store_refreeze_energy;
double store_sensible;
double store_snow_flux;
// snow structure
double store_canopy_vapor_flux;
double store_melt;
double store_vapor_flux;
double store_blowing_flux;
double store_surface_flux;
// veg_var structure
double store_canopyevap;
double store_throughfall;
// cell structure
double store_layerevap[MAX_LAYERS];
double store_ppt;
double store_aero_cond_used[2];
double store_pot_evap;
// Structures holding values for current snow step
energy_bal_struct snow_energy; // energy fluxes at snowpack surface
energy_bal_struct soil_energy; // energy fluxes at soil surface
veg_var_struct snow_veg_var; // veg fluxes/storages in presence of snow
veg_var_struct soil_veg_var; // veg fluxes/storages in soil energy balance
snow_data_struct step_snow;
layer_data_struct step_layer[MAX_LAYERS];
// Structures holding values for current iteration
energy_bal_struct iter_snow_energy; // energy fluxes at snowpack surface
energy_bal_struct iter_soil_energy; // energy fluxes at soil surface
veg_var_struct iter_snow_veg_var; // veg fluxes/storages in presence of snow
veg_var_struct iter_soil_veg_var; // veg fluxes/storages in soil energy balance
snow_data_struct iter_snow;
layer_data_struct iter_layer[MAX_LAYERS];
double iter_aero_resist[3];
double iter_aero_resist_veg[3];
double iter_aero_resist_used[2];
double iter_pot_evap;
#ifdef VCS_V5
double iter_pot_evap_veg;
double iter_pot_evap_soil;
#endif
// handle bisection of understory solution
double store_tol_under;
double A_tol_under;
// handle bisection of overstory solution
double store_tol_over;
// Carbon cycling
double dryFrac;
double *LAIlayer = NULL;
double *faPAR = NULL;
size_t cidx;
double store_gc;
double *store_gsLayer = NULL;
double store_Ci;
double store_GPP;
double store_Rdark;
double store_Rphoto;
double store_Rmaint;
double store_Rgrowth;
double store_Raut;
double store_NPP;
if (options.CLOSE_ENERGY) {
MAX_ITER_GRND_CANOPY = 10;
}
else {
MAX_ITER_GRND_CANOPY = 0;
}
if (options.CARBON) {
store_gsLayer = calloc(options.Ncanopy, sizeof(*store_gsLayer));
check_alloc_status(store_gsLayer, "Memory allocation error.");
}
/***********************************************************************
Set temporary variables for convenience
***********************************************************************/
aero_resist_used = cell->aero_resist;
inflow = &(cell->inflow);
layer = cell->layer;
/***********************************************************************
Set temporary variables - preserves original values until iterations
are completed
***********************************************************************/
energy->advection = 0;
energy->deltaCC = 0;
if (snow->swq > 0) {
snow_flux = energy->snow_flux;
}
else {
snow_flux = -(energy->grnd_flux + energy->deltaH + energy->fusion);
}
energy->refreeze_energy = 0;
coverage = snow->coverage;
snow_energy = (*energy);
soil_energy = (*energy);
iter_soil_energy = (*energy);
snow_veg_var = (*veg_var);
soil_veg_var = (*veg_var);
step_snow = (*snow);
for (lidx = 0; lidx < Nlayers; lidx++) {
step_layer[lidx] = layer[lidx];
}
for (lidx = 0; lidx < Nlayers; lidx++) {
step_layer[lidx].evap = 0;
}
soil_veg_var.canopyevap = 0;
snow_veg_var.canopyevap = 0;
soil_veg_var.throughfall = 0;
snow_veg_var.throughfall = 0;
/********************************
Set-up sub-time step controls
(May eventually want to set this up so that it is also true
if frozen soils are present)
********************************/
if (snow->swq > 0 || snow->snow_canopy > 0 || force->snowflag[NR]) {
hidx = 0;
step_inc = 1;
endhidx = hidx + NF;
step_dt = gp->snow_dt;
}
else {
hidx = NR;
step_inc = 1;
endhidx = hidx + step_inc;
step_dt = gp->dt;
}
/*******************************************
Initialize sub-model time step variables
*******************************************/
// energy structure
store_AlbedoOver = 0;
store_AlbedoUnder = 0;
store_AtmosLatent = 0;
store_AtmosLatentSub = 0;
store_AtmosSensible = 0;
store_LongOverIn = 0;
store_LongUnderIn = 0;
store_LongUnderOut = 0;
store_NetLongAtmos = 0;
store_NetLongOver = 0;
store_NetLongUnder = 0;
store_NetShortAtmos = 0;
store_NetShortGrnd = 0;
store_NetShortOver = 0;
store_NetShortUnder = 0;
store_ShortOverIn = 0;
store_ShortUnderIn = 0;
store_advected_sensible = 0;
store_advection = 0;
store_canopy_advection = 0;
store_canopy_latent = 0;
store_canopy_latent_sub = 0;
store_canopy_sensible = 0;
store_canopy_refreeze = 0;
store_deltaCC = 0;
store_deltaH = 0;
store_fusion = 0;
store_grnd_flux = 0;
store_latent = 0;
store_latent_sub = 0;
store_melt_energy = 0;
store_refreeze_energy = 0;
store_sensible = 0;
store_snow_flux = 0;
// snow structure
last_snow_coverage = snow->coverage;
store_canopy_vapor_flux = 0;
store_melt = 0;
store_vapor_flux = 0;
store_surface_flux = 0;
store_blowing_flux = 0;
// veg_var and cell structures
store_throughfall = 0.;
store_canopyevap = 0.;
for (lidx = 0; lidx < options.Nlayer; lidx++) {
store_layerevap[lidx] = 0.;
}
step_Wdew = veg_var->Wdew;
// misc
store_ppt = 0;
store_aero_cond_used[0] = 0;
store_aero_cond_used[1] = 0;
(*snow_inflow) = 0;
store_pot_evap = 0;
N_steps = 0;
// Carbon cycling
if (options.CARBON) {
store_gc = 0;
for (cidx = 0; cidx < options.Ncanopy; cidx++) {
store_gsLayer[cidx] = 0;
}
store_Ci = 0;
store_GPP = 0;
store_Rdark = 0;
store_Rphoto = 0;
store_Rmaint = 0;
store_Rgrowth = 0;
store_Raut = 0;
store_NPP = 0;
}
/*************************
Compute surface fluxes
*************************/
do
{
/** Solve energy balance for all sub-model time steps **/
/* set air temperature and precipitation for this snow band */
Tair = force->air_temp[hidx] + soil_con->Tfactor[band];
step_prec = force->prec[hidx] * soil_con->Pfactor[band];
// initialize ground surface temperaure
Tgrnd = energy->T[0];
// initialize canopy terms
Tcanopy = Tair;
VPcanopy = force->vp[hidx];
VPDcanopy = force->vpd[hidx];
over_iter = 0;
tol_over = 999;
last_Tcanopy = 999;
last_snow_flux = 999;
// compute LAI and absorbed PAR per canopy layer
if (options.CARBON && iveg < Nveg) {
LAIlayer = calloc(options.Ncanopy, sizeof(*LAIlayer));
check_alloc_status(LAIlayer, "Memory allocation error.");
faPAR = calloc(options.Ncanopy, sizeof(*faPAR));
check_alloc_status(faPAR, "Memory allocation error.");
/* Compute absorbed PAR per ground area per canopy layer (W/m2)
normalized to PAR = 1 W, i.e. the canopy albedo in the PAR
range (alb_total ~ 0.45*alb_par + 0.55*alb_other) */
faparl(CanopLayerBnd,
veg_var->LAI,
soil_con->AlbedoPar,
force->coszen[hidx],
force->fdir[hidx],
LAIlayer,
faPAR);
/* Convert to absolute (unnormalized) absorbed PAR per leaf area per canopy layer
(umol(photons)/m2 leaf area / s); dividing by Epar converts PAR from W to umol(photons)/s */
veg_var->aPAR = 0;
for (cidx = 0; cidx < options.Ncanopy; cidx++) {
if (LAIlayer[cidx] > 1e-10) {
veg_var->aPARLayer[cidx] =
(force->par[hidx] /
param.PHOTO_EPAR) * faPAR[cidx] / LAIlayer[cidx];
veg_var->aPAR += force->par[hidx] * faPAR[cidx] /
LAIlayer[cidx];
}
else {
veg_var->aPARLayer[cidx] = force->par[hidx] /
param.PHOTO_EPAR *
faPAR[cidx] / 1e-10;
veg_var->aPAR += force->par[hidx] * faPAR[cidx] / 1e-10;
}
}
free((char*) LAIlayer);
free((char*) faPAR);
}
// Compute mass flux of blowing snow
if (!overstory && options.BLOWING && step_snow.swq > 0.) {
Ls = calc_latent_heat_of_sublimation(step_snow.surf_temp);
step_snow.blowing_flux = CalcBlowingSnow(step_dt, Tair,
step_snow.last_snow,
step_snow.surf_water,
wind[2], Ls,
force->density[hidx],
force->vp[hidx],
roughness[2],
ref_height[2],
step_snow.depth,
lag_one, sigma_slope,
step_snow.surf_temp, iveg,
Nveg, fetch,
displacement[1],
roughness[1],
&step_snow.transport);
if ((int) step_snow.blowing_flux == ERROR) {
return (ERROR);
}
step_snow.blowing_flux *= step_dt / CONST_RHOFW; /* m/time step */
}
else {
step_snow.blowing_flux = 0.0;
}
do
{
/** Iterate for overstory solution **/
over_iter++;
last_tol_over = tol_over;
under_iter = 0;
tol_under = 999;
UnderStory = 999;
UNSTABLE_CNT = 0;
// bisect understory
A_tol_under = 999;
store_tol_under = 999;
store_tol_over = 999;
do
{
/** Iterate for understory solution - itererates to find snow flux **/
under_iter++;
last_tol_under = tol_under;
if (last_Tcanopy != 999) {
Tcanopy = (last_Tcanopy + Tcanopy) / 2.;
}
last_Tcanopy = Tcanopy;
// update understory energy balance terms for iteration
if (last_snow_flux != 999) {
if ((fabs(store_tol_under) > fabs(A_tol_under) &&
A_tol_under != 999 &&
fabs(store_tol_under - A_tol_under) > 1.) ||
tol_under < 0) { // stepped the correct way
UNSTABLE_CNT++;
if (UNSTABLE_CNT > 3 || tol_under < 0) {
UNSTABLE_SNOW = true;
}
}
else if (!INCLUDE_SNOW) { // stepped the wrong way
snow_flux =
(last_snow_flux + iter_soil_energy.snow_flux) / 2.;
}
}
last_snow_flux = snow_flux;
A_tol_under = store_tol_under;
snow_grnd_flux = -snow_flux;
// Initialize structures for new iteration
iter_snow_energy = snow_energy;
iter_soil_energy = soil_energy;
iter_snow_veg_var = snow_veg_var;
iter_soil_veg_var = soil_veg_var;
iter_snow = step_snow;
for (lidx = 0; lidx < Nlayers; lidx++) {
iter_layer[lidx] = step_layer[lidx];
}
iter_snow_veg_var.Wdew = step_Wdew;
iter_soil_veg_var.Wdew = step_Wdew;
iter_snow_veg_var.canopyevap = 0;
iter_soil_veg_var.canopyevap = 0;
for (lidx = 0; lidx < Nlayers; lidx++) {
iter_layer[lidx].evap = 0;
}
for (q = 0; q < 3; q++) {
iter_aero_resist[q] = aero_resist[q];
iter_aero_resist_veg[q] = aero_resist[q];
}
iter_aero_resist_used[0] = aero_resist_used[0];
iter_aero_resist_used[1] = aero_resist_used[1];
iter_snow.canopy_vapor_flux = 0;
iter_snow.vapor_flux = 0;
iter_snow.surface_flux = 0;
/* iter_snow.blowing_flux has already been reset to step_snow.blowing_flux */
LongUnderOut = iter_soil_energy.LongUnderOut;
dryFrac = -1;
/** Solve snow accumulation, ablation and interception **/
step_melt = solve_snow(overstory, BareAlbedo, LongUnderOut,
param.SNOW_MIN_RAIN_TEMP,
param.SNOW_MAX_SNOW_TEMP,
Tcanopy, Tgrnd, Tair,
step_prec, snow_grnd_flux,
&energy->AlbedoUnder, Le,
&LongUnderIn, &NetLongSnow,
&NetShortGrnd,
&NetShortSnow, &ShortUnderIn, &OldTSurf,
iter_aero_resist, iter_aero_resist_used,
&coverage, &delta_coverage,
&delta_snow_heat, displacement,
gauge_correction, &step_melt_energy,
&step_out_prec, &step_out_rain,
&step_out_snow,
&step_ppt, &rainfall, ref_height,
roughness, snow_inflow, &snowfall,
&surf_atten,
wind, root, UNSTABLE_SNOW,
Nveg, iveg, band, step_dt, hidx,
veg_class,
&UnderStory, CanopLayerBnd, &dryFrac,
dmy, force, &(iter_snow_energy),
iter_layer, &(iter_snow),
soil_con,
&(iter_snow_veg_var));
if (step_melt == ERROR) {
return (ERROR);
}
/* Check that the snow surface temperature was estimated, if not
prepare to include thin snowpack in the estimation of the
snow-free surface energy balance */
if ((iter_snow.surf_temp == 999 || UNSTABLE_SNOW) &&
iter_snow.swq > 0) {
INCLUDE_SNOW = UnderStory + 1;
iter_soil_energy.advection = iter_snow_energy.advection;
iter_snow.surf_temp = step_snow.surf_temp;
step_melt_energy = 0;
}
else {
INCLUDE_SNOW = false;
}
if (iter_snow.snow) {
iter_aero_resist_veg[0] = iter_aero_resist_used[0];
iter_aero_resist_veg[1] = iter_aero_resist_used[1];
}
/**************************************************
Solve Energy Balance Components at Soil Surface
**************************************************/
Tsurf = calc_surf_energy_bal((*Le), LongUnderIn, NetLongSnow,
NetShortGrnd, NetShortSnow,
OldTSurf,
ShortUnderIn, iter_snow.albedo,
iter_snow_energy.latent,
iter_snow_energy.latent_sub,
iter_snow_energy.sensible,
Tcanopy, VPDcanopy,
VPcanopy,
delta_coverage, dp,
ice0, step_melt_energy, moist0,
iter_snow.coverage,
(step_snow.depth + iter_snow.depth) / 2.,
BareAlbedo, surf_atten,
iter_aero_resist, iter_aero_resist_veg, iter_aero_resist_used,
displacement, &step_melt, &step_ppt,
rainfall, ref_height, roughness,
snowfall, wind, root, INCLUDE_SNOW,
UnderStory, options.Nnode, Nveg,
step_dt, hidx, iveg,
(int) overstory, veg_class,
CanopLayerBnd, &dryFrac, force,
dmy, &iter_soil_energy,
iter_layer,
&(iter_snow), soil_con,
&iter_soil_veg_var);
if ((int) Tsurf == ERROR) {
// Return error flag to skip rest of grid cell
return (ERROR);
}
if (INCLUDE_SNOW) {
/* store melt from thin snowpack */
step_ppt += step_melt;
}
/*****************************************
Compute energy balance with atmosphere
*****************************************/
if (iter_snow.snow && overstory) {
// do this if overstory is active and energy balance is closed
Tcanopy = calc_atmos_energy_bal(
iter_snow_energy.canopy_sensible,
iter_soil_energy.sensible,
iter_snow_energy.canopy_latent,
iter_soil_energy.latent,
iter_snow_energy.canopy_latent_sub,
iter_soil_energy.latent_sub,
iter_snow_energy.NetLongOver,
iter_soil_energy.NetLongUnder,
iter_snow_energy.NetShortOver,
iter_soil_energy.NetShortUnder,
iter_aero_resist_veg[1], Tair,
force->density[hidx],
&iter_soil_energy.AtmosError,
&iter_soil_energy.AtmosLatent,
&iter_soil_energy.AtmosLatentSub,
&iter_soil_energy.NetLongAtmos,
&iter_soil_energy.NetShortAtmos,
&iter_soil_energy.AtmosSensible,
&iter_soil_energy.Tcanopy_fbflag,
&iter_soil_energy.Tcanopy_fbcount);
/* iterate to find Tcanopy which will solve the atmospheric energy
balance. Since I do not know vp in the canopy, use the
sum of latent heats from the ground and foliage, and iterate
on the temperature used for the sensible heat flux from the
canopy air to the mixing level */
if ((int) Tcanopy == ERROR) {
// Return error flag to skip rest of grid cell
return (ERROR);
}
}
else {
// else put surface fluxes into atmospheric flux storage so that
// the model will continue to function
iter_soil_energy.AtmosLatent = iter_soil_energy.latent;
iter_soil_energy.AtmosLatentSub =
iter_soil_energy.latent_sub;
iter_soil_energy.AtmosSensible = iter_soil_energy.sensible;
iter_soil_energy.NetLongAtmos =
iter_soil_energy.NetLongUnder;
iter_soil_energy.NetShortAtmos =
iter_soil_energy.NetShortUnder;
}
iter_soil_energy.Tcanopy = Tcanopy;
iter_snow_energy.Tcanopy = Tcanopy;
/*****************************************
Compute iteration tolerance statistics
*****************************************/
// compute understory tolerance
if (INCLUDE_SNOW ||
(iter_snow.swq == 0 && delta_coverage == 0)) {
store_tol_under = 0;
tol_under = 0;
}
else {
store_tol_under = snow_flux - iter_soil_energy.snow_flux;
tol_under = fabs(store_tol_under);
}
if (fabs(tol_under - last_tol_under) < param.TOL_GRND &&
tol_under >
1.) {
tol_under = -999;
}
// compute overstory tolerance
if (overstory && iter_snow.snow) {
store_tol_over = Tcanopy - last_Tcanopy;
tol_over = fabs(store_tol_over);
}
else {
store_tol_over = 0;
tol_over = 0;
}
}
while ((fabs(tol_under - last_tol_under) > param.TOL_GRND) &&
(tol_under != 0) && (under_iter < MAX_ITER_GRND_CANOPY));
}
while ((fabs(tol_over - last_tol_over) > param.TOL_OVER &&
overstory) && (tol_over != 0) &&
(over_iter < MAX_ITER_GRND_CANOPY));
/**************************************
Compute GPP, Raut, and NPP
**************************************/
if (options.CARBON) {
if (iveg < Nveg && !step_snow.snow && dryFrac > 0) {
canopy_assimilation(vic_run_veg_lib[veg_class].Ctype,
vic_run_veg_lib[veg_class].MaxCarboxRate,
vic_run_veg_lib[veg_class].MaxETransport,
vic_run_veg_lib[veg_class].CO2Specificity,
iter_soil_veg_var.NscaleFactor,
Tair,
force->shortwave[hidx],
iter_soil_veg_var.aPARLayer,
soil_con->elevation,
force->Catm[hidx],
CanopLayerBnd,
veg_var->LAI,
"rs",
iter_soil_veg_var.rsLayer,
&(iter_soil_veg_var.rc),
&(iter_soil_veg_var.Ci),
&(iter_soil_veg_var.GPP),
&(iter_soil_veg_var.Rdark),
&(iter_soil_veg_var.Rphoto),
&(iter_soil_veg_var.Rmaint),
&(iter_soil_veg_var.Rgrowth),
&(iter_soil_veg_var.Raut),
&(iter_soil_veg_var.NPP));
/* Adjust by fraction of canopy that was dry and account for any other inhibition`*/
dryFrac *= iter_soil_veg_var.NPPfactor;
iter_soil_veg_var.GPP *= dryFrac;
iter_soil_veg_var.Rdark *= dryFrac;
iter_soil_veg_var.Rphoto *= dryFrac;
iter_soil_veg_var.Rmaint *= dryFrac;
iter_soil_veg_var.Rgrowth *= dryFrac;
iter_soil_veg_var.Raut *= dryFrac;
iter_soil_veg_var.NPP *= dryFrac;
/* Adjust by veg cover fraction */
iter_soil_veg_var.GPP *= iter_soil_veg_var.fcanopy;
iter_soil_veg_var.Rdark *= iter_soil_veg_var.fcanopy;
iter_soil_veg_var.Rphoto *= iter_soil_veg_var.fcanopy;
iter_soil_veg_var.Rmaint *= iter_soil_veg_var.fcanopy;
iter_soil_veg_var.Rgrowth *= iter_soil_veg_var.fcanopy;
iter_soil_veg_var.Raut *= iter_soil_veg_var.fcanopy;
iter_soil_veg_var.NPP *= iter_soil_veg_var.fcanopy;
}
else {
iter_soil_veg_var.rc = param.HUGE_RESIST;
for (cidx = 0; cidx < options.Ncanopy; cidx++) {
iter_soil_veg_var.rsLayer[cidx] = param.HUGE_RESIST;
}
iter_soil_veg_var.Ci = 0;
iter_soil_veg_var.GPP = 0;
iter_soil_veg_var.Rdark = 0;
iter_soil_veg_var.Rphoto = 0;
iter_soil_veg_var.Rmaint = 0;
iter_soil_veg_var.Rgrowth = 0;
iter_soil_veg_var.Raut = 0;
iter_soil_veg_var.NPP = 0;
}
}
/**************************************
Compute Potential Evap
**************************************/
compute_pot_evap(gp->model_steps_per_day,
vic_run_veg_lib[veg_class].rmin,
iter_soil_veg_var.albedo, force->shortwave[hidx],
iter_soil_energy.NetLongAtmos,
vic_run_veg_lib[veg_class].RGL, Tair, VPDcanopy,
iter_soil_veg_var.LAI, soil_con->elevation,
iter_aero_resist_veg,
vic_run_veg_lib[veg_class].overstory,
vic_run_veg_lib[veg_class].rarc,
iter_soil_veg_var.fcanopy, iter_aero_resist_used[0],
&iter_pot_evap
#ifdef VCS_V5
,
&iter_pot_evap_veg,
&iter_pot_evap_soil
#endif
);
#ifdef VCS_V5
cell->VCS.pot_evap_veg_daily += iter_pot_evap_veg;
cell->VCS.pot_evap_soil_daily += iter_pot_evap_soil;
cell->VCS.pot_evap_total_daily += iter_pot_evap;
#endif
/**************************************
Store sub-model time step variables
**************************************/
snow_energy = iter_snow_energy;
soil_energy = iter_soil_energy;
snow_veg_var = iter_snow_veg_var;
soil_veg_var = iter_soil_veg_var;
step_snow = iter_snow;
for (lidx = 0; lidx < options.Nlayer; lidx++) {
step_layer[lidx] = iter_layer[lidx];
}
if (iveg != Nveg) {
if (step_snow.snow) {
store_throughfall += snow_veg_var.throughfall;
store_canopyevap += snow_veg_var.canopyevap;
soil_veg_var.Wdew = snow_veg_var.Wdew;
}
else {
store_throughfall += soil_veg_var.throughfall;
store_canopyevap += soil_veg_var.canopyevap;
snow_veg_var.Wdew = soil_veg_var.Wdew;
}
step_Wdew = soil_veg_var.Wdew;
if (options.CARBON) {
store_gc += 1 / soil_veg_var.rc;
for (cidx = 0; cidx < options.Ncanopy; cidx++) {
store_gsLayer[cidx] += 1 / soil_veg_var.rsLayer[cidx];
}
store_Ci += soil_veg_var.Ci;
store_GPP += soil_veg_var.GPP;
store_Rdark += soil_veg_var.Rdark;
store_Rphoto += soil_veg_var.Rphoto;
store_Rmaint += soil_veg_var.Rmaint;
store_Rgrowth += soil_veg_var.Rgrowth;
store_Raut += soil_veg_var.Raut;
store_NPP += soil_veg_var.NPP;
}
}
for (lidx = 0; lidx < options.Nlayer; lidx++) {
store_layerevap[lidx] += step_layer[lidx].evap;
}
store_ppt += step_ppt;
if (iter_aero_resist_used[0] > 0) {
store_aero_cond_used[0] += 1 / iter_aero_resist_used[0];
}
else {
store_aero_cond_used[0] += param.HUGE_RESIST;
}
if (iter_aero_resist_used[1] > 0) {
store_aero_cond_used[1] += 1 / iter_aero_resist_used[1];
}
else {
store_aero_cond_used[1] += param.HUGE_RESIST;
}
if (iveg != Nveg) {
store_canopy_vapor_flux += step_snow.canopy_vapor_flux;
}
store_melt += step_melt;
store_vapor_flux += step_snow.vapor_flux;
store_surface_flux += step_snow.surface_flux;
store_blowing_flux += step_snow.blowing_flux;
out_prec[0] += step_out_prec;
out_rain[0] += step_out_rain;
out_snow[0] += step_out_snow;
if (INCLUDE_SNOW) {
/* copy needed flux terms to the snowpack */
snow_energy.advected_sensible = soil_energy.advected_sensible;
snow_energy.advection = soil_energy.advection;
snow_energy.deltaCC = soil_energy.deltaCC;
snow_energy.latent = soil_energy.latent;
snow_energy.latent_sub = soil_energy.latent_sub;
snow_energy.refreeze_energy = soil_energy.refreeze_energy;
snow_energy.sensible = soil_energy.sensible;
snow_energy.snow_flux = soil_energy.snow_flux;
}
store_AlbedoOver += snow_energy.AlbedoOver;
store_AlbedoUnder += soil_energy.AlbedoUnder;
store_AtmosLatent += soil_energy.AtmosLatent;
store_AtmosLatentSub += soil_energy.AtmosLatentSub;
store_AtmosSensible += soil_energy.AtmosSensible;
store_LongOverIn += snow_energy.LongOverIn;
store_LongUnderIn += LongUnderIn;
store_LongUnderOut += soil_energy.LongUnderOut;
store_NetLongAtmos += soil_energy.NetLongAtmos;
store_NetLongOver += snow_energy.NetLongOver;
store_NetLongUnder += soil_energy.NetLongUnder;
store_NetShortAtmos += soil_energy.NetShortAtmos;
store_NetShortGrnd += NetShortGrnd;
store_NetShortOver += snow_energy.NetShortOver;
store_NetShortUnder += soil_energy.NetShortUnder;
store_ShortOverIn += snow_energy.ShortOverIn;
store_ShortUnderIn += soil_energy.ShortUnderIn;
store_canopy_advection += snow_energy.canopy_advection;
store_canopy_latent += snow_energy.canopy_latent;
store_canopy_latent_sub += snow_energy.canopy_latent_sub;
store_canopy_sensible += snow_energy.canopy_sensible;
store_canopy_refreeze += snow_energy.canopy_refreeze;
store_deltaH += soil_energy.deltaH;
store_fusion += soil_energy.fusion;
store_grnd_flux += soil_energy.grnd_flux;
store_latent += soil_energy.latent;
store_latent_sub += soil_energy.latent_sub;
store_melt_energy += step_melt_energy;
store_sensible += soil_energy.sensible;
if (step_snow.swq == 0 && INCLUDE_SNOW) {
if (last_snow_coverage == 0 && step_prec > 0) {
last_snow_coverage = 1;
}
store_advected_sensible += snow_energy.advected_sensible *
last_snow_coverage;
store_advection += snow_energy.advection * last_snow_coverage;
store_deltaCC += snow_energy.deltaCC * last_snow_coverage;
store_snow_flux += soil_energy.snow_flux * last_snow_coverage;
store_refreeze_energy += snow_energy.refreeze_energy *
last_snow_coverage;
}
else if (step_snow.snow || INCLUDE_SNOW) {
store_advected_sensible += snow_energy.advected_sensible *
(step_snow.coverage + delta_coverage);
store_advection += snow_energy.advection *
(step_snow.coverage + delta_coverage);
store_deltaCC += snow_energy.deltaCC *
(step_snow.coverage + delta_coverage);
store_snow_flux += soil_energy.snow_flux *
(step_snow.coverage + delta_coverage);
store_refreeze_energy += snow_energy.refreeze_energy *
(step_snow.coverage + delta_coverage);
}
store_pot_evap += iter_pot_evap;
/* increment time step */
N_steps++;
hidx += step_inc;
}
while (hidx < endhidx);
/************************************************
Store snow variables for sub-model time steps
************************************************/
(*snow) = step_snow;
snow->vapor_flux = store_vapor_flux;
snow->blowing_flux = store_blowing_flux;
snow->surface_flux = store_surface_flux;
snow->canopy_vapor_flux = store_canopy_vapor_flux;
(*Melt) = store_melt;
snow->melt = store_melt;
ppt = store_ppt;
/******************************************************
Store energy flux averages for sub-model time steps
******************************************************/
(*energy) = soil_energy;
energy->AlbedoOver = store_AlbedoOver / (double) N_steps;
energy->AlbedoUnder = store_AlbedoUnder / (double) N_steps;
energy->AtmosLatent = store_AtmosLatent / (double) N_steps;
energy->AtmosLatentSub = store_AtmosLatentSub / (double) N_steps;
energy->AtmosSensible = store_AtmosSensible / (double) N_steps;
energy->LongOverIn = store_LongOverIn / (double) N_steps;
energy->LongUnderIn = store_LongUnderIn / (double) N_steps;
energy->LongUnderOut = store_LongUnderOut / (double) N_steps;
energy->NetLongAtmos = store_NetLongAtmos / (double) N_steps;
energy->NetLongOver = store_NetLongOver / (double) N_steps;
energy->NetLongUnder = store_NetLongUnder / (double) N_steps;
energy->NetShortAtmos = store_NetShortAtmos / (double) N_steps;
energy->NetShortGrnd = store_NetShortGrnd / (double) N_steps;
energy->NetShortOver = store_NetShortOver / (double) N_steps;
energy->NetShortUnder = store_NetShortUnder / (double) N_steps;
energy->ShortOverIn = store_ShortOverIn / (double) N_steps;
energy->ShortUnderIn = store_ShortUnderIn / (double) N_steps;
energy->advected_sensible = store_advected_sensible / (double) N_steps;
energy->canopy_advection = store_canopy_advection / (double) N_steps;
energy->canopy_latent = store_canopy_latent / (double) N_steps;
energy->canopy_latent_sub = store_canopy_latent_sub / (double) N_steps;
energy->canopy_refreeze = store_canopy_refreeze / (double) N_steps;
energy->canopy_sensible = store_canopy_sensible / (double) N_steps;
energy->deltaH = store_deltaH / (double) N_steps;
energy->fusion = store_fusion / (double) N_steps;
energy->grnd_flux = store_grnd_flux / (double) N_steps;
energy->latent = store_latent / (double) N_steps;
energy->latent_sub = store_latent_sub / (double) N_steps;
energy->melt_energy = store_melt_energy / (double) N_steps;
energy->sensible = store_sensible / (double) N_steps;
if (snow->snow || INCLUDE_SNOW) {
energy->advection = store_advection / (double) N_steps;
energy->deltaCC = store_deltaCC / (double) N_steps;
energy->refreeze_energy = store_refreeze_energy / (double) N_steps;
energy->snow_flux = store_snow_flux / (double) N_steps;
}
energy->Tfoliage = snow_energy.Tfoliage;
energy->Tfoliage_fbflag = snow_energy.Tfoliage_fbflag;
energy->Tfoliage_fbcount = snow_energy.Tfoliage_fbcount;
/**********************************************************
Store vegetation variable sums for sub-model time steps
**********************************************************/
if (iveg != Nveg) {
veg_var->throughfall = store_throughfall;
veg_var->canopyevap = store_canopyevap;
if (snow->snow) {
veg_var->Wdew = snow_veg_var.Wdew;
}
else {
veg_var->Wdew = soil_veg_var.Wdew;
}
}
/**********************************************************
Store soil layer variables for sub-model time steps
**********************************************************/
for (lidx = 0; lidx < Nlayers; lidx++) {
layer[lidx] = step_layer[lidx];
layer[lidx].evap = store_layerevap[lidx];
}
if (store_aero_cond_used[0] > 0 && store_aero_cond_used[0] <
param.HUGE_RESIST) {
aero_resist_used[0] = 1 / (store_aero_cond_used[0] / (double) N_steps);
}
else if (store_aero_cond_used[0] >= param.HUGE_RESIST) {
aero_resist_used[0] = 0;
}
else {
aero_resist_used[0] = param.HUGE_RESIST;
}
if (store_aero_cond_used[1] > 0 && store_aero_cond_used[1] <
param.HUGE_RESIST) {
aero_resist_used[1] = 1 / (store_aero_cond_used[1] / (double) N_steps);
}
else if (store_aero_cond_used[1] >= param.HUGE_RESIST) {
aero_resist_used[1] = 0;
}
else {
aero_resist_used[1] = param.HUGE_RESIST;
}
cell->pot_evap = store_pot_evap;
/**********************************************************
Store carbon cycle variable sums for sub-model time steps
**********************************************************/
if (options.CARBON && iveg != Nveg) {
veg_var->rc = 1 / store_gc / (double) N_steps;
for (cidx = 0; cidx < options.Ncanopy; cidx++) {
veg_var->rsLayer[cidx] = 1 / store_gsLayer[cidx] / (double) N_steps;
}
veg_var->Ci = store_Ci / (double) N_steps;
veg_var->GPP = store_GPP / (double) N_steps;
veg_var->Rdark = store_Rdark / (double) N_steps;
veg_var->Rphoto = store_Rphoto / (double) N_steps;
veg_var->Rmaint = store_Rmaint / (double) N_steps;
veg_var->Rgrowth = store_Rgrowth / (double) N_steps;
veg_var->Raut = store_Raut / (double) N_steps;
veg_var->NPP = store_NPP / (double) N_steps;
free((char *) (store_gsLayer));
soil_carbon_balance(soil_con, energy, cell, veg_var);
// Update running total annual NPP
if (veg_var->NPP > 0) {
veg_var->AnnualNPP += veg_var->NPP * CONST_MWC / MOLE_PER_KMOLE *
gp->dt;
}
}
/********************************************************
Compute Runoff, Baseflow, and Soil Moisture Transport
********************************************************/
(*inflow) = ppt;
ErrorFlag = runoff(cell, energy, soil_con, ppt, soil_con->frost_fract,
options.Nnode);
return(ErrorFlag);
}