int64_t st_conn_stinger_source (const struct stinger * G, const int64_t nv, const int64_t ne, const int64_t from, const int64_t * sources, const int64_t num, const int64_t numSteps) { int64_t k; int64_t *Q = (int64_t *) xmalloc (nv * sizeof (int64_t)); int64_t *marks_s = (int64_t *) xmalloc (nv * sizeof (int64_t)); int64_t *marks_t = (int64_t *) xmalloc (nv * sizeof (int64_t)); int64_t *QHead = (int64_t *) xmalloc (2 * numSteps * sizeof (int64_t)); int64_t *neighbors = (int64_t *) xmalloc (ne * sizeof (int64_t)); int64_t count = 0; int64_t deg_s = stinger_outdegree (G, from); if (deg_s == 0) { return num; } bfs_stinger (G, nv, ne, from, marks_s, numSteps, Q, QHead, neighbors); for (k = 0; k < num; k++) { int64_t t = sources[k]; int64_t deg_t = stinger_outdegree (G, t); if (deg_t == 0) { stinger_int64_fetch_add (&count, 1); } else { bfs_stinger (G, nv, ne, t, marks_t, numSteps, Q, QHead, neighbors); int64_t local_count = 0; MTA ("mta assert nodep") for (int64_t j = 0; j < nv; j++) { if (marks_s[j] && marks_t[j]) stinger_int64_fetch_add (&local_count, 1); } if (local_count == 0) stinger_int64_fetch_add (&count, 1); } } free (neighbors); free (QHead); free (marks_t); free (marks_s); free (Q); return count; }
void bfs_stinger (const struct stinger *G, const int64_t nv, const int64_t ne, const int64_t startV, int64_t * marks, const int64_t numSteps, int64_t * Q, int64_t * QHead, int64_t * neighbors) { int64_t j, k, s; int64_t nQ, Qnext, Qstart, Qend; int64_t w_start; MTA ("mta assert nodep") for (j = 0; j < nv; j++) { marks[j] = 0; } s = startV; /* Push node s onto Q and set bounds for first Q sublist */ Q[0] = s; Qnext = 1; nQ = 1; QHead[0] = 0; QHead[1] = 1; marks[s] = 1; PushOnStack: /* Push nodes onto Q */ /* Execute the nested loop for each node v on the Q AND for each neighbor w of v */ Qstart = QHead[nQ - 1]; Qend = QHead[nQ]; w_start = 0; MTA ("mta assert no dependence") MTA ("mta block dynamic schedule") for (j = Qstart; j < Qend; j++) { int64_t v = Q[j]; size_t d; size_t deg_v = stinger_outdegree (G, v); int64_t my_w = stinger_int64_fetch_add (&w_start, deg_v); stinger_gather_typed_successors (G, 0, v, &d, &neighbors[my_w], deg_v); assert (d == deg_v); MTA ("mta assert nodep") for (k = 0; k < deg_v; k++) { int64_t d, w, l; w = neighbors[my_w + k]; /* If node has not been visited, set distance and push on Q */ if (stinger_int64_fetch_add (marks + w, 1) == 0) { Q[stinger_int64_fetch_add (&Qnext, 1)] = w; } } } if (Qnext != QHead[nQ] && nQ < numSteps) { nQ++; QHead[nQ] = Qnext; goto PushOnStack; } }
// NE number of undirected edges. csrGraph* CreateCSRFromStinger(struct stinger* stingerGraph,int64_t NV,int64_t NE) { csrGraph* newGraph = (csrGraph*)malloc(sizeof(csrGraph)); newGraph->NV = NV; newGraph->NE = NE*2; newGraph->vertexPointerArray=(int64_t*)malloc(sizeof(int64_t)*(NV+1)); newGraph->edgeArray=(int64_t*)malloc(sizeof(int64_t)*NE); int64_t edgeCounter=0; newGraph->vertexPointerArray[0]=0; for(int64_t v=0; v<NV;v++) { newGraph->vertexPointerArray[v+1]= newGraph->vertexPointerArray[v]+stinger_outdegree(stingerGraph,v); STINGER_FORALL_EDGES_OF_VTX_BEGIN(stingerGraph,v) { newGraph->edgeArray[edgeCounter]=STINGER_EDGE_DEST; edgeCounter++; } STINGER_FORALL_EDGES_OF_VTX_END(); }
int64_t count_triangles (stinger_t * S, uint64_t v) { int64_t out = 0; int64_t deg = stinger_outdegree(S, v); int64_t * neighbors = xmalloc(deg * sizeof(int64_t)); size_t d; stinger_gather_typed_successors(S, 0, v, &d, neighbors, deg); qsort(neighbors, d, sizeof(int64_t), compare); STINGER_FORALL_EDGES_OF_VTX_BEGIN(S, v) { if (STINGER_EDGE_DEST != v) { //out += count_intersections (S, v, STINGER_EDGE_DEST); out += count_intersections (S, v, STINGER_EDGE_DEST, neighbors, d); } } STINGER_FORALL_EDGES_OF_VTX_END(); free (neighbors); return out; }
int64_t st_conn_stinger (const struct stinger *G, const int64_t nv, const int64_t ne, const int64_t * sources, const int64_t num, const int64_t numSteps) { int64_t k, x; int64_t *Q_big = (int64_t *) xmalloc (INC * nv * sizeof (int64_t)); int64_t *marks_s_big = (int64_t *) xmalloc (INC * nv * sizeof (int64_t)); int64_t *marks_t_big = (int64_t *) xmalloc (INC * nv * sizeof (int64_t)); int64_t *QHead_big = (int64_t *) xmalloc (INC * 2 * numSteps * sizeof (int64_t)); int64_t *neighbors_big = (int64_t *) xmalloc (INC * ne * sizeof (int64_t)); int64_t count = 0; k = 0; x = 0; OMP ("omp parallel for") MTA ("mta assert parallel") MTA ("mta loop future") MTA ("mta assert nodep") MTA ("mta assert no alias") for (x = 0; x < INC; x++) { int64_t *Q = Q_big + x * nv; int64_t *marks_s = marks_s_big + x * nv; int64_t *marks_t = marks_t_big + x * nv; int64_t *QHead = QHead_big + x * 2 * numSteps; int64_t *neighbors = neighbors_big + x * ne; for (int64_t claimedk = stinger_int64_fetch_add (&k, 2); claimedk < 2 * num; claimedk = stinger_int64_fetch_add (&k, 2)) { int64_t s = sources[claimedk]; int64_t deg_s = stinger_outdegree (G, s); int64_t t = sources[claimedk + 1]; int64_t deg_t = stinger_outdegree (G, t); if (deg_s == 0 || deg_t == 0) { stinger_int64_fetch_add (&count, 1); } else { bfs_stinger (G, nv, ne, s, marks_s, numSteps, Q, QHead, neighbors); bfs_stinger (G, nv, ne, t, marks_t, numSteps, Q, QHead, neighbors); int64_t local_count = 0; MTA ("mta assert nodep") for (int64_t j = 0; j < nv; j++) { if (marks_s[j] && marks_t[j]) stinger_int64_fetch_add (&local_count, 1); } if (local_count == 0) stinger_int64_fetch_add (&count, 1); } } } free (neighbors_big); free (QHead_big); free (marks_t_big); free (marks_s_big); free (Q_big); return count; }