void CubeMesh::defineIntersection( const CubeMesh* other,
double& xmin, double &xmax,
double& ymin, double &ymax,
double& zmin, double &zmax )
const
{
const double meshSlop = 0.2;
xmin = ( x0_ > other->x0_ ) ? x0_ : other->x0_;
xmax = ( x1_ < other->x1_ ) ? x1_ : other->x1_;
ymin = ( y0_ > other->y0_ ) ? y0_ : other->y0_;
ymax = ( y1_ < other->y1_ ) ? y1_ : other->y1_;
zmin = ( z0_ > other->z0_ ) ? z0_ : other->z0_;
zmax = ( z1_ < other->z1_ ) ? z1_ : other->z1_;
// Align to coarser mesh
double temp = ( xmin - x0_) / dx_;
if ( temp - floor( temp ) > meshSlop )
xmin = floor( temp ) * dx_;
temp = ( ymin - y0_) / dy_;
if ( temp - floor( temp ) > meshSlop )
ymin = floor( temp ) * dy_;
temp = ( zmin - z0_) / dz_;
if ( temp - floor( temp ) > meshSlop )
zmin = floor( temp ) * dz_;
// Provide 1 voxel padding all around.
xmin -= dx_;
xmax += dx_;
ymin -= dy_;
ymax += dy_;
zmin -= dz_;
zmax += dz_;
swapIfBackward( xmin, xmax );
swapIfBackward( ymin, ymax );
swapIfBackward( zmin, zmax );
}
/**
* This assumes that dx, dy, dz are the quantities to preserve, over
* numEntries.
* So when the compartment changes volume, so does numEntries. dx, dy, dz
* do not change, some of the sub-cuboids will partially be outside.
*/
void CubeMesh::updateCoords()
{
swapIfBackward( x0_, x1_ );
swapIfBackward( y0_, y1_ );
swapIfBackward( z0_, z1_ );
if ( preserveNumEntries_ ) {
dx_ = ( x1_ - x0_ ) / nx_;
dy_ = ( y1_ - y0_ ) / ny_;
dz_ = ( z1_ - z0_ ) / nz_;
} else {
nx_ = round( (x1_ - x0_) / dx_ );
ny_ = round( (y1_ - y0_) / dy_ );
nz_ = round( (z1_ - z0_) / dz_ );
if ( nx_ == 0 ) nx_ = 1;
if ( ny_ == 0 ) ny_ = 1;
if ( nz_ == 0 ) nz_ = 1;
}
/// Temporarily fill out the whole cube for m2s and s2m. These
// will change for none-cube geometries.
unsigned int size = nx_ * ny_ * nz_;
m2s_.resize( size );
s2m_.resize( size );
for ( unsigned int i = 0; i < size; ++i ) {
m2s_[i] = s2m_[i] = i;
}
// Fill out surface vector
surface_.resize( 0 );
/*
if ( numDims() == 0 ) {
surface_.push_back( 0 );
} else if ( numDims() == 1 ) {
surface_.push_back( 0 );
if ( size > 1 )
surface_.push_back( size - 1 );
} else if ( numDims() == 2 ) {
fillTwoDimSurface();
} else if ( numDims() == 3 ) {
fillThreeDimSurface();
}
*/
fillThreeDimSurface();
// volume_ = ( x1_ - x0_ ) * ( y1_ - y0_ ) * ( z1_ - z0_ );
assert( size >= 0 );
buildStencil();
}
