void process_ping(struct thorium_actor *self, struct thorium_message *message) { int count; char *buffer; int buffer_size; uint64_t *bucket; uint64_t expected_checksum; uint64_t actual_checksum; struct process *concrete_self; concrete_self = (struct process *)thorium_actor_concrete_actor(self); buffer = thorium_message_buffer(message); count = thorium_message_count(message); buffer_size = count - sizeof(expected_checksum); bucket = (uint64_t *)(buffer + buffer_size); expected_checksum = *bucket; actual_checksum = core_hash_data_uint64_t(buffer, buffer_size, SEED); if (expected_checksum != actual_checksum) { printf("TRANSPORT FAILED source: %d (%d) destination: %d (%d) tag: ACTION_PING count: %d" " expected_checksum: %" PRIu64 " actual_checksum: %" PRIu64 "\n", thorium_message_source(message), thorium_message_source_node(message), thorium_message_destination(message), thorium_message_destination_node(message), count, expected_checksum, actual_checksum); ++concrete_self->failed; } else { ++concrete_self->passed; } thorium_actor_send_reply_empty(self, ACTION_PING_REPLY); }
void thorium_message_get_all(struct thorium_message *message, int *tag, int *count, void **buffer, int *source) { *tag = thorium_message_action(message); *count = thorium_message_count(message); *buffer = thorium_message_buffer(message); *source = thorium_message_source(message); }
void thorium_actor_send_then(struct thorium_actor *self, int destination, struct thorium_message *message, thorium_actor_receive_fn_t handler) { CORE_DEBUGGER_ASSERT(destination != THORIUM_ACTOR_NOBODY); CORE_DEBUGGER_ASSERT(NAME() != THORIUM_ACTOR_NOBODY); thorium_actor_send(self, destination, message); int parent_actor = thorium_message_source(message); int parent_message = thorium_message_get_identifier(message); /* */ LOG("XXX ASK... registering message %d:%d", parent_actor, parent_message); /* * Register the information so that the callback is invoked * when the response arrives. * * the key is parent_actor + parent_message and the value is handler. */ thorium_actor_add_action_with_parent(self, parent_actor, parent_message, handler); /* printf("NOT_IMPLEMENTED src %d dst %d msgid %d:%d" "\n", thorium_actor_name(self), destination, parent_actor, parent_message); */ }
void biosal_assembly_arc_classifier_receive(struct thorium_actor *self, struct thorium_message *message) { int tag; void *buffer; struct biosal_assembly_arc_classifier *concrete_self; int size; int i; int *bucket; int source; int source_index; if (thorium_actor_take_action(self, message)) { return; } concrete_self = (struct biosal_assembly_arc_classifier *)thorium_actor_concrete_actor(self); tag = thorium_message_action(message); buffer = thorium_message_buffer(message); source = thorium_message_source(message); if (tag == ACTION_SET_CONSUMERS) { core_vector_unpack(&concrete_self->consumers, buffer); size = core_vector_size(&concrete_self->consumers); core_vector_resize(&concrete_self->pending_requests, size); for (i = 0; i < size; i++) { core_vector_set_int(&concrete_self->pending_requests, i, 0); } thorium_actor_send_reply_empty(self, ACTION_SET_CONSUMERS_REPLY); } else if (tag == ACTION_ASSEMBLY_PUSH_ARC_BLOCK_REPLY){ /* * Decrease counter now. */ source_index = core_vector_index_of(&concrete_self->consumers, &source); bucket = core_vector_at(&concrete_self->pending_requests, source_index); --(*bucket); --concrete_self->active_requests; /* * The previous value was maximum_pending_request_count + 1 */ if (*bucket == concrete_self->maximum_pending_request_count) { --concrete_self->consumer_count_above_threshold; } biosal_assembly_arc_classifier_verify_counters(self); } }
void thorium_message_init_copy(struct thorium_message *self, struct thorium_message *old_message) { thorium_message_init(self, thorium_message_action(old_message), thorium_message_count(old_message), thorium_message_buffer(old_message)); thorium_message_set_source(self, thorium_message_source(old_message)); thorium_message_set_destination(self, thorium_message_destination(old_message)); }
void buddy_receive(struct thorium_actor *actor, struct thorium_message *message) { int tag; int source; int name; name = thorium_actor_name(actor); source = thorium_message_source(message); tag = thorium_message_action(message); if (tag == ACTION_BUDDY_BOOT) { printf("ACTION_BUDDY_BOOT\n"); thorium_actor_print(actor); thorium_message_init(message, ACTION_BUDDY_BOOT_REPLY, 0, NULL); thorium_actor_send(actor, source, message); } else if (tag == ACTION_BUDDY_HELLO) { printf("ACTION_BUDDY_HELLO\n"); /* pin the actor to the worker for no reason ! */ /* thorium_actor_send_to_self_empty(actor, ACTION_PIN_TO_WORKER); */ thorium_message_init(message, ACTION_BUDDY_HELLO_REPLY, 0, NULL); thorium_actor_send(actor, source, message); } else if (tag == ACTION_ASK_TO_STOP) { printf("BUDDY_DIE\n"); printf("buddy_receive Actor %i received a message (%i BUDDY_DIE) from actor %i\n", name, tag, source); /* thorium_actor_send_to_self_empty(actor, ACTION_UNPIN_FROM_WORKER); */ thorium_message_init(message, ACTION_STOP, 0, NULL); thorium_actor_send(actor, name, message); } }
void biosal_assembly_graph_store_get_summary(struct thorium_actor *self, struct thorium_message *message) { struct biosal_assembly_graph_store *concrete_self; int source; source = thorium_message_source(message); concrete_self = thorium_actor_concrete_actor(self); concrete_self->summary_in_progress = 1; concrete_self->source_for_summary = source; thorium_actor_add_action_with_condition(self, ACTION_YIELD_REPLY, biosal_assembly_graph_store_yield_reply_summary, &concrete_self->summary_in_progress, 1); core_map_iterator_init(&concrete_self->iterator, &concrete_self->table); thorium_actor_send_to_self_empty(self, ACTION_YIELD); }
void spate_ask_to_stop(struct thorium_actor *self, struct thorium_message *message) { int source; struct spate *concrete_self; concrete_self = (struct spate *)thorium_actor_concrete_actor(self); source = thorium_message_source(message); if (!spate_must_print_help(self)) { thorium_actor_log(self, "spate %d stops", thorium_actor_name(self)); } #if 0 thorium_actor_ask_to_stop(self, message); #endif /* * Check if the source is an initial actor because each initial actor * is its own supervisor. */ if (core_vector_index_of(&concrete_self->initial_actors, &source) >= 0) { thorium_actor_send_to_self_empty(self, ACTION_STOP); } if (concrete_self->is_leader) { if (concrete_self->assembly_graph_builder != THORIUM_ACTOR_NOBODY) thorium_actor_send_empty(self, concrete_self->assembly_graph_builder, ACTION_ASK_TO_STOP); if (concrete_self->assembly_graph_builder != THORIUM_ACTOR_NOBODY) thorium_actor_send_empty(self, concrete_self->manager_for_sequence_stores, ACTION_ASK_TO_STOP); if (!spate_must_print_help(self)) { core_timer_stop(&concrete_self->timer); core_timer_print_with_description(&concrete_self->timer, "Total"); } } }
void biosal_input_controller_set_offset_reply(struct thorium_actor *self, struct thorium_message *message) { int stream_index; int acquaintance_index; int source; int block_index; struct biosal_mega_block *block; struct biosal_input_controller *concrete_actor; int file_index; char *file_name; struct thorium_message new_message; source = thorium_message_source(message); acquaintance_index = source; concrete_actor = (struct biosal_input_controller *)thorium_actor_concrete_actor(self); stream_index = core_vector_index_of(&concrete_actor->reading_streams, &acquaintance_index); block_index = core_map_get_int(&concrete_actor->assigned_blocks, &stream_index); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("DEBUG got reply from stream/%d for offset, stream_index %d block_index %d\n", source, stream_index, block_index); #endif block = (struct biosal_mega_block *)core_vector_at(&concrete_actor->mega_block_vector, block_index); file_index = biosal_mega_block_get_file(block); file_name = *(char **)core_vector_at(&concrete_actor->files, file_index); printf("DEBUG send ACTION_INPUT_OPEN %s\n", file_name); thorium_message_init(&new_message, ACTION_INPUT_OPEN, strlen(file_name) + 1, file_name); thorium_actor_send_reply(self, &new_message); thorium_message_destroy(&new_message); }
void framr_hello_reply(actor_t *actor, message_t *message) { message_t new_message; int name; int source; int boss; framr_t *self; struct core_vector *spawners; self = thorium_actor_concrete_actor(actor); name = thorium_actor_name(actor); source = thorium_message_source(message); spawners = &self->spawners; pm("Actor %d is satisfied with a reply from the neighbor %d.\n", name, source); boss = core_vector_at_as_int(spawners, 0); thorium_message_init(&new_message, ACTION_NOTIFY, 0, NULL); thorium_actor_send(actor, boss, &new_message); thorium_message_destroy(&new_message); }
void biosal_input_controller_add_store(struct thorium_actor *actor, struct thorium_message *message) { int source; int store; int index; struct biosal_input_controller *concrete_actor; int *bucket; /* printf("DEBUG biosal_input_controller_add_store\n"); */ concrete_actor = (struct biosal_input_controller *)thorium_actor_concrete_actor(actor); source = thorium_message_source(message); thorium_message_unpack_int(message, 0, &store); index = core_vector_index_of(&concrete_actor->spawners, &source); /* printf("DEBUG biosal_input_controller_add_store index %d\n", index); */ bucket = core_vector_at(&concrete_actor->stores_per_spawner, index); /* the content of the bucket is initially the total number of * stores that are desired for this spawner. */ *bucket = (*bucket - 1); core_vector_push_back(&concrete_actor->consumers, &store); thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_CREATE_STORES); /* printf("DEBUG remaining to spawn: %d (before returning)\n", *bucket); */ }
void biosal_assembly_graph_store_push_data(struct thorium_actor *self, struct thorium_message *message) { struct biosal_assembly_graph_store *concrete_self; int name; int source; concrete_self = thorium_actor_concrete_actor(self); source = thorium_message_source(message); concrete_self->source = source; name = thorium_actor_name(self); core_map_init(&concrete_self->coverage_distribution, sizeof(int), sizeof(uint64_t)); printf("%s/%d: local table has %" PRIu64" canonical kmers (%" PRIu64 " kmers)\n", thorium_actor_script_name(self), name, core_map_size(&concrete_self->table), 2 * core_map_size(&concrete_self->table)); core_memory_pool_examine(&concrete_self->persistent_memory); core_map_iterator_init(&concrete_self->iterator, &concrete_self->table); thorium_actor_send_to_self_empty(self, ACTION_YIELD); }
void reader_receive(struct thorium_actor *actor, struct thorium_message *message) { int tag; int argc; char **argv; /*int i;*/ int name; struct reader *reader1; int source; uint64_t count; void *buffer; int sequences; int script; int sequence_index; char *received_sequence; int error; reader1 = (struct reader *)thorium_actor_concrete_actor(actor); tag = thorium_message_action(message); source = thorium_message_source(message); buffer = thorium_message_buffer(message); name = thorium_actor_name(actor); if (tag == ACTION_START) { core_vector_init(&reader1->spawners, 0); core_vector_unpack(&reader1->spawners, buffer); argc = thorium_actor_argc(actor); argv = thorium_actor_argv(actor); name = thorium_actor_name(actor); reader1->last_report = 0; /* printf("actor %i received %i arguments\n", name, argc); for (i = 0; i < argc ;i++) { printf(" argument %i : %s\n", i, argv[i]); } */ if (core_vector_index_of(&reader1->spawners, &name) != 0) { thorium_message_init(message, ACTION_STOP, 0, NULL); thorium_actor_send(actor, name, message); return; } if (argc == 1) { thorium_message_init(message, ACTION_STOP, 0, NULL); thorium_actor_send(actor, name, message); return; } reader1->sequence_reader = thorium_actor_spawn(actor, SCRIPT_INPUT_STREAM); reader1->file = argv[argc - 1]; thorium_message_init(message, ACTION_INPUT_OPEN, strlen(reader1->file) + 1, reader1->file); printf("actor %i: asking actor %i to count entries in %s\n", name, reader1->sequence_reader, reader1->file); thorium_actor_send(actor, reader1->sequence_reader, message); } else if (tag == ACTION_INPUT_COUNT_PROGRESS) { sequences = *(int64_t *)buffer; if (sequences < reader1->last_report + 10000000) { return; } printf("Actor %i received a progress report from actor %i: %i\n", name, source, sequences); reader1->last_report = sequences; } else if (tag == ACTION_INPUT_OPEN_REPLY && !reader1->counted) { thorium_message_unpack_int(message, 0, &error); if (error == BIOSAL_INPUT_ERROR_NO_ERROR) { printf("Successfully opened file.\n"); thorium_actor_send_reply_empty(actor, ACTION_INPUT_COUNT); } else if (error == BIOSAL_INPUT_ERROR_FILE_NOT_FOUND) { printf("Error, file not found! \n"); thorium_actor_send_to_self_empty(actor, ACTION_STOP); } else if (error == BIOSAL_INPUT_ERROR_FORMAT_NOT_SUPPORTED) { printf("Error, format not supported! \n"); thorium_actor_send_to_self_empty(actor, ACTION_STOP); } } else if (tag == ACTION_INPUT_COUNT_REPLY) { count = *(int64_t*)thorium_message_buffer(message); printf("actor %i: file has %" PRIu64 " items\n", name, count); thorium_message_init(message, ACTION_INPUT_CLOSE, 0, NULL); thorium_actor_send(actor, source, message); reader1->counted = 1; } else if (tag == ACTION_INPUT_CLOSE_REPLY && !reader1->pulled) { /* not necessary, it is already dead. */ thorium_actor_send_reply_empty(actor, ACTION_ASK_TO_STOP); printf("actor %d received ACTION_INPUT_CLOSE_REPLY from actor %d, asking it to stop" " with ACTION_ASK_TO_STOP\n", name, source); /* thorium_message_init(message, ACTION_STOP, 0, NULL); thorium_actor_send(actor, name, message); return; */ script = SCRIPT_INPUT_STREAM; thorium_message_init(message, ACTION_SPAWN, sizeof(script), &script); thorium_actor_send(actor, name, message); } else if (tag == ACTION_INPUT_CLOSE_REPLY && reader1->pulled) { thorium_actor_send_reply_empty(actor, ACTION_ASK_TO_STOP); thorium_actor_send_to_self_empty(actor, ACTION_STOP); } else if (tag == ACTION_ASK_TO_STOP_REPLY && reader1->pulled) { /* this tag will never arrive here */ thorium_message_init(message, ACTION_STOP, 0, NULL); thorium_actor_send(actor, name, message); } else if (tag == ACTION_SPAWN_REPLY && source == name) { reader1->sequence_reader = *(int *)buffer; printf("actor %d tells actor %d to open %s to pull sequences from the file\n", name, reader1->sequence_reader, reader1->file); thorium_message_init(message, ACTION_INPUT_OPEN, strlen(reader1->file) + 1, reader1->file); thorium_actor_send(actor, reader1->sequence_reader, message); } else if (tag == ACTION_INPUT_OPEN_REPLY && reader1->counted) { thorium_message_init(message, ACTION_INPUT_GET_SEQUENCE, 0, NULL); thorium_actor_send(actor, source, message); } else if (tag == ACTION_INPUT_GET_SEQUENCE_REPLY) { sequence_index = *(int *)buffer; received_sequence = (char*)buffer + sizeof(sequence_index); /* printf("DEBUG %d %s\n", sequence_index, received_sequence); */ if (sequence_index == 123456) { printf("actor %d says that sequence %d is %s.\n", name, sequence_index, received_sequence); } else if (sequence_index % 100000 == 0) { printf("actor %d is pulling sequences from fellow local actor %d," " %d sequences pulled so far !\n", name, reader1->sequence_reader, sequence_index); } if (sequence_index < 1000000) { thorium_message_init(message, ACTION_INPUT_GET_SEQUENCE, 0, NULL); thorium_actor_send(actor, source, message); } else { thorium_message_init(message, ACTION_INPUT_CLOSE, 0, NULL); thorium_actor_send(actor, source, message); reader1->pulled = 1; } } else if (tag == ACTION_INPUT_GET_SEQUENCE_END) { printf("actor %d: reached the end...\n", name); thorium_message_init(message, ACTION_INPUT_CLOSE, 0, NULL); thorium_actor_send(actor, source, message); reader1->pulled = 1; } }
void frame_receive(struct thorium_actor *actor, struct thorium_message *message) { int tag; int name; void *buffer; struct frame *concrete_actor; int other; struct core_vector initial_actors; struct core_vector *acquaintance_vector; int source; source = thorium_message_source(message); concrete_actor = (struct frame *)thorium_actor_concrete_actor(actor); tag = thorium_message_action(message); name = thorium_actor_name(actor); buffer = thorium_message_buffer(message); acquaintance_vector = &concrete_actor->acquaintance_vector; if (tag == ACTION_START) { core_vector_init(&initial_actors, sizeof(int)); core_vector_unpack(&initial_actors, buffer); core_vector_push_back_vector(acquaintance_vector, &initial_actors); core_vector_destroy(&initial_actors); other = thorium_actor_spawn(actor, thorium_actor_script(actor)); core_vector_push_back_int(acquaintance_vector, other); thorium_actor_send_empty(actor, other, ACTION_PING); printf("actor %d sends ACTION_PING to new actor %d\n", name, other); } else if (tag == ACTION_PING) { /* new acquaintance */ core_vector_push_back(acquaintance_vector, &source); printf("actor %d (value %d) receives ACTION_PING from actor %d\n", name, concrete_actor->value, source); printf("Acquaintances of actor %d: ", name); core_vector_print_int(acquaintance_vector); printf("\n"); thorium_actor_send_reply_empty(actor, ACTION_PING_REPLY); } else if (tag == ACTION_PING_REPLY) { concrete_actor->pings++; printf("actor %d receives ACTION_PING_REPLY from actor %d\n", name, source); /* kill the system */ if (concrete_actor->migrated_other && concrete_actor->pings == 2) { thorium_actor_send_reply_empty(actor, ACTION_ASK_TO_STOP); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } /* migrate other actor */ printf("actor %d asks actor %d to migrate using actor %d as spawner\n", name, source, name); printf("Acquaintances of actor %d: ", name); core_vector_print_int(acquaintance_vector); printf("\n"); thorium_actor_send_reply_int(actor, ACTION_MIGRATE, name); /* send a message to other while it is migrating. * this is supposed to work ! */ printf("actor %d sends ACTION_PING to %d while it is migrating\n", name, source); thorium_actor_send_reply_empty(actor, ACTION_PING); concrete_actor->migrated_other = 1; } else if (tag == ACTION_MIGRATE_REPLY) { thorium_message_unpack_int(message, 0, &other); printf("actor %d received migrated actor %d\n", name, other); printf("Acquaintances of actor %d: ", name); core_vector_print_int(acquaintance_vector); printf("\n"); /* it is possible that the ACTION_PING went through * before the migration */ if (concrete_actor->pings == 2) { thorium_actor_send_reply_empty(actor, ACTION_ASK_TO_STOP); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); } } else if (tag == ACTION_PACK) { thorium_actor_send_reply_int(actor, ACTION_PACK_REPLY, concrete_actor->value); } else if (tag == ACTION_UNPACK) { thorium_message_unpack_int(message, 0, &concrete_actor->value); thorium_actor_send_reply_empty(actor, ACTION_UNPACK_REPLY); } else if (tag == ACTION_ASK_TO_STOP) { printf("actor %d received ACTION_ASK_TO_STOP, value: %d ", name, concrete_actor->value); printf("acquaintance vector: "); core_vector_print_int(acquaintance_vector); printf("\n"); thorium_actor_send_to_self_empty(actor, ACTION_STOP); } }
void biosal_coverage_distribution_receive(struct thorium_actor *self, struct thorium_message *message) { int tag; struct core_map map; struct core_map_iterator iterator; int *coverage_from_message; uint64_t *count_from_message; uint64_t *frequency; int count; void *buffer; struct biosal_coverage_distribution *concrete_actor; int name; int source; struct core_memory_pool *ephemeral_memory; ephemeral_memory = thorium_actor_get_ephemeral_memory(self); name = thorium_actor_name(self); source = thorium_message_source(message); concrete_actor = (struct biosal_coverage_distribution *)thorium_actor_concrete_actor(self); tag = thorium_message_action(message); count = thorium_message_count(message); buffer = thorium_message_buffer(message); if (tag == ACTION_PUSH_DATA) { core_map_init(&map, 0, 0); core_map_set_memory_pool(&map, ephemeral_memory); core_map_unpack(&map, buffer); core_map_iterator_init(&iterator, &map); while (core_map_iterator_has_next(&iterator)) { core_map_iterator_next(&iterator, (void **)&coverage_from_message, (void **)&count_from_message); #ifdef BIOSAL_COVERAGE_DISTRIBUTION_DEBUG thorium_actor_log(self, "DEBUG DATA %d %d\n", (int)*coverage_from_message, (int)*count_from_message); #endif frequency = core_map_get(&concrete_actor->distribution, coverage_from_message); if (frequency == NULL) { frequency = core_map_add(&concrete_actor->distribution, coverage_from_message); (*frequency) = 0; } (*frequency) += (*count_from_message); } core_map_iterator_destroy(&iterator); thorium_actor_send_reply_empty(self, ACTION_PUSH_DATA_REPLY); concrete_actor->actual++; thorium_actor_log(self, "distribution/%d receives coverage data from producer/%d, %d entries / %d bytes %d/%d\n", name, source, (int)core_map_size(&map), count, concrete_actor->actual, concrete_actor->expected); if (concrete_actor->expected != 0 && concrete_actor->expected == concrete_actor->actual) { thorium_actor_log(self, "received everything %d/%d\n", concrete_actor->actual, concrete_actor->expected); biosal_coverage_distribution_write_distribution(self); thorium_actor_send_empty(self, concrete_actor->source, ACTION_NOTIFY); } core_map_destroy(&map); } else if (tag == ACTION_ASK_TO_STOP) { biosal_coverage_distribution_ask_to_stop(self, message); } else if (tag == ACTION_SET_EXPECTED_MESSAGE_COUNT) { concrete_actor->source = source; thorium_message_unpack_int(message, 0, &concrete_actor->expected); thorium_actor_log(self, "distribution %d expects %d messages\n", thorium_actor_name(self), concrete_actor->expected); thorium_actor_send_reply_empty(self, ACTION_SET_EXPECTED_MESSAGE_COUNT_REPLY); } }
void biosal_assembly_arc_classifier_push_arc_block(struct thorium_actor *self, struct thorium_message *message) { struct biosal_assembly_arc_classifier *concrete_self; int source; struct biosal_assembly_arc_block input_block; struct biosal_assembly_arc_block *output_block; struct core_vector output_blocks; struct core_memory_pool *ephemeral_memory; int consumer_count; struct core_vector *input_arcs; struct core_vector *output_arcs; int size; int i; struct biosal_assembly_arc *arc; void *buffer; int count; struct biosal_dna_kmer *kmer; int consumer_index; int arc_count; int consumer; struct thorium_message new_message; int new_count; void *new_buffer; int *bucket; int maximum_pending_requests; int maximum_buffer_length; int reservation; count = thorium_message_count(message); buffer = thorium_message_buffer(message); if (count == 0) { printf("Error, count is 0 (classifier_push_arc_block)\n"); return; } concrete_self = (struct biosal_assembly_arc_classifier *)thorium_actor_concrete_actor(self); source = thorium_message_source(message); consumer_count = core_vector_size(&concrete_self->consumers); ephemeral_memory = thorium_actor_get_ephemeral_memory(self); CORE_DEBUGGER_LEAK_DETECTION_BEGIN(ephemeral_memory, classify_arcs); core_vector_init(&output_blocks, sizeof(struct biosal_assembly_arc_block)); core_vector_set_memory_pool(&output_blocks, ephemeral_memory); biosal_assembly_arc_block_init(&input_block, ephemeral_memory, concrete_self->kmer_length, &concrete_self->codec); #ifdef BIOSAL_ASSEMBLY_ARC_CLASSIFIER_DEBUG printf("UNPACKING\n"); #endif biosal_assembly_arc_block_unpack(&input_block, buffer, concrete_self->kmer_length, &concrete_self->codec, ephemeral_memory); #ifdef BIOSAL_ASSEMBLY_ARC_CLASSIFIER_DEBUG printf("OK\n"); #endif input_arcs = biosal_assembly_arc_block_get_arcs(&input_block); /* * Configure the ephemeral memory reservation. */ arc_count = core_vector_size(input_arcs); reservation = (arc_count / consumer_count) * 2; core_vector_resize(&output_blocks, consumer_count); CORE_DEBUGGER_ASSERT(!core_memory_pool_has_double_free(ephemeral_memory)); /* * Initialize output blocks. * There is one for each destination. */ for (i = 0; i < consumer_count; i++) { output_block = core_vector_at(&output_blocks, i); biosal_assembly_arc_block_init(output_block, ephemeral_memory, concrete_self->kmer_length, &concrete_self->codec); biosal_assembly_arc_block_reserve(output_block, reservation); } size = core_vector_size(input_arcs); /* * Classify every arc in the input block * and put them in output blocks. */ #ifdef BIOSAL_ASSEMBLY_ARC_CLASSIFIER_DEBUG printf("ClassifyArcs arc_count= %d\n", size); #endif CORE_DEBUGGER_ASSERT(!core_memory_pool_has_double_free(ephemeral_memory)); for (i = 0; i < size; i++) { arc = core_vector_at(input_arcs, i); kmer = biosal_assembly_arc_source(arc); consumer_index = biosal_dna_kmer_store_index(kmer, consumer_count, concrete_self->kmer_length, &concrete_self->codec, ephemeral_memory); output_block = core_vector_at(&output_blocks, consumer_index); /* * Make a copy of the arc and copy it. * It will be freed */ biosal_assembly_arc_block_add_arc_copy(output_block, arc, concrete_self->kmer_length, &concrete_self->codec, ephemeral_memory); } /* * Input arcs are not needed anymore. */ biosal_assembly_arc_block_destroy(&input_block, ephemeral_memory); CORE_DEBUGGER_ASSERT(!core_memory_pool_has_double_free(ephemeral_memory)); /* * Finally, send these output blocks to consumers. */ maximum_pending_requests = 0; maximum_buffer_length = 0; /* * Figure out the maximum buffer length tor * messages. */ for (i = 0; i < consumer_count; i++) { output_block = core_vector_at(&output_blocks, i); new_count = biosal_assembly_arc_block_pack_size(output_block, concrete_self->kmer_length, &concrete_self->codec); if (new_count > maximum_buffer_length) { maximum_buffer_length = new_count; } } #if 0 printf("POOL_BALANCE %d\n", core_memory_pool_profile_balance_count(ephemeral_memory)); #endif for (i = 0; i < consumer_count; i++) { output_block = core_vector_at(&output_blocks, i); output_arcs = biosal_assembly_arc_block_get_arcs(output_block); arc_count = core_vector_size(output_arcs); /* * Don't send an empty message. */ if (arc_count > 0) { /* * Allocation is not required because new_count <= maximum_buffer_length */ new_count = biosal_assembly_arc_block_pack_size(output_block, concrete_self->kmer_length, &concrete_self->codec); new_buffer = thorium_actor_allocate(self, maximum_buffer_length); CORE_DEBUGGER_ASSERT(new_count <= maximum_buffer_length); biosal_assembly_arc_block_pack(output_block, new_buffer, concrete_self->kmer_length, &concrete_self->codec); thorium_message_init(&new_message, ACTION_ASSEMBLY_PUSH_ARC_BLOCK, new_count, new_buffer); consumer = core_vector_at_as_int(&concrete_self->consumers, i); /* * Send the message. */ thorium_actor_send(self, consumer, &new_message); thorium_message_destroy(&new_message); /* update event counters for control. */ bucket = core_vector_at(&concrete_self->pending_requests, i); ++(*bucket); ++concrete_self->active_requests; if (*bucket > maximum_pending_requests) { maximum_pending_requests = *bucket; } if (*bucket > concrete_self->maximum_pending_request_count) { ++concrete_self->consumer_count_above_threshold; } } CORE_DEBUGGER_ASSERT(!core_memory_pool_has_double_free(ephemeral_memory)); #if 0 printf("i = %d\n", i); #endif /* * Destroy output block. */ biosal_assembly_arc_block_destroy(output_block, ephemeral_memory); CORE_DEBUGGER_LEAK_CHECK_DOUBLE_FREE(ephemeral_memory); CORE_DEBUGGER_ASSERT(!core_memory_pool_has_double_free(ephemeral_memory)); } core_vector_destroy(&output_blocks); CORE_DEBUGGER_ASSERT(!core_memory_pool_has_double_free(ephemeral_memory)); CORE_DEBUGGER_LEAK_CHECK_DOUBLE_FREE(ephemeral_memory); /* * Check if a response must be sent now. */ ++concrete_self->received_blocks; concrete_self->source = source; /* * Only send a direct reply if there is enough memory. * * As long as maximum_pending_requests is lower than maximum_pending_request_count, * there is still space for at least one additional request. */ if (maximum_pending_requests < concrete_self->maximum_pending_request_count && core_memory_has_enough_bytes()) { thorium_actor_send_empty(self, concrete_self->source, ACTION_ASSEMBLY_PUSH_ARC_BLOCK_REPLY); } else { concrete_self->producer_is_waiting = 1; } CORE_DEBUGGER_LEAK_DETECTION_END(ephemeral_memory, classify_arcs); }
void biosal_input_stream_count_reply(struct thorium_actor *self, struct thorium_message *message) { struct biosal_input_stream *concrete_self; void *buffer; uint64_t result; struct biosal_mega_block *block; int i; int size; struct core_vector *vector; int source_index; int source; int j; uint64_t total; concrete_self = (struct biosal_input_stream *)thorium_actor_concrete_actor(self); buffer = thorium_message_buffer(message); source = thorium_message_source(message); source_index = core_vector_index_of(&concrete_self->parallel_streams, &source); vector = core_vector_at(&concrete_self->parallel_mega_blocks, source_index); core_vector_unpack(vector, buffer); block = core_vector_at_last(vector); result = biosal_mega_block_get_entries(block); concrete_self->total_entries += result; ++concrete_self->finished_parallel_stream_count; printf("DEBUG count_reply %d/%d\n", concrete_self->finished_parallel_stream_count, (int)core_vector_size(&concrete_self->parallel_streams)); /* * Send back an array of mega blocks when it is done. */ if (concrete_self->finished_parallel_stream_count == core_vector_size(&concrete_self->parallel_streams)) { /* * Transfer mega blocks * to main vector. */ size = core_vector_size(&concrete_self->parallel_streams); for (i = 0; i < size; i++) { /* * This is easy to do because they are already sorted. * * With one parallel stream, there is nothing else to do. * * Otherwise, mega blocks with correct entries_from_start * need to be created (the entries fields are only for * the stuff between 2 offsets so they are already * correct. */ vector = core_vector_at(&concrete_self->parallel_mega_blocks, i); #if 0 printf("ParallelStream %d\n", i); #endif for (j = 0; j < core_vector_size(vector); j++) { block = core_vector_at(vector, j); biosal_mega_block_print(block); } core_vector_push_back_vector(&concrete_self->mega_blocks, vector); } /* * Update total */ total = 0; for (i = 0; i < core_vector_size(&concrete_self->mega_blocks); i++) { block = core_vector_at(&concrete_self->mega_blocks, i); total += biosal_mega_block_get_entries(block); biosal_mega_block_set_entries_from_start(block, total); } /* * Destroy mega block vectors. */ for (i = 0; i < size; i++) { vector = core_vector_at(&concrete_self->parallel_mega_blocks, i); core_vector_destroy(vector); } core_vector_resize(&concrete_self->parallel_mega_blocks, 0); printf("DEBUG send ACTION_INPUT_COUNT_IN_PARALLEL_REPLY to %d\n", concrete_self->controller); thorium_actor_send_vector(self, concrete_self->controller, ACTION_INPUT_COUNT_IN_PARALLEL_REPLY, &concrete_self->mega_blocks); } }
void thorium_worker_send(struct thorium_worker *worker, struct thorium_message *message) { void *buffer; int count; void *old_buffer; old_buffer = thorium_message_buffer(message); /* * Allocate a buffer if the actor provided a NULL buffer or if it * provided its own buffer. */ if (old_buffer == NULL || old_buffer != worker->zero_copy_buffer) { count = thorium_message_count(message); /* use slab allocator */ buffer = thorium_worker_allocate(worker, count); /* according to * http://stackoverflow.com/questions/3751797/can-i-call-core_memory_copy-and-core_memory_move-with-number-of-bytes-set-to-zero * memcpy works with a count of 0, but the addresses must be valid * nonetheless * * Copy the message data. */ if (count > 0) { #ifdef DISPLAY_COPY_WARNING printf("thorium_worker: Warning, not using zero-copy path, action %x count %d source %d destination %d\n", thorium_message_action(message), count, thorium_message_source(message), thorium_message_destination(message)); #endif core_memory_copy(buffer, old_buffer, count); } thorium_message_set_buffer(message, buffer); } /* * Always write metadata. */ thorium_message_write_metadata(message); #ifdef THORIUM_WORKER_DEBUG_INJECTION ++worker->counter_allocated_outbound_buffers; #endif #ifdef THORIUM_WORKER_DEBUG_MEMORY printf("ALLOCATE %p\n", buffer); #endif #ifdef THORIUM_WORKER_DEBUG printf("[thorium_worker_send] allocated %i bytes (%i + %i) for buffer %p\n", all, count, metadata_size, buffer); printf("thorium_worker_send old buffer: %p\n", thorium_message_buffer(message)); #endif #ifdef THORIUM_BUG_594 if (thorium_message_action(©) == 30202) { printf("DEBUG-594 thorium_worker_send\n"); thorium_message_print(©); } #endif #ifdef THORIUM_WORKER_DEBUG_20140601 if (thorium_message_action(message) == 1100) { printf("DEBUG thorium_worker_send 1100\n"); } #endif /* if the destination is on the same node, * handle that directly here to avoid locking things * with the node. */ thorium_worker_enqueue_message(worker, message); worker->zero_copy_buffer = NULL; }
void table_receive(struct thorium_actor *actor, struct thorium_message *message) { int tag; int source; int name; int remote; struct thorium_message spawn_message; int script; int new_actor; void *buffer; struct table *table1; table1 = (struct table *)thorium_actor_concrete_actor(actor); source = thorium_message_source(message); tag = thorium_message_action(message); name = thorium_actor_name(actor); buffer = thorium_message_buffer(message); if (tag == ACTION_START) { printf("Actor %i receives ACTION_START from actor %i\n", name, source); core_vector_init(&table1->spawners, 0); core_vector_unpack(&table1->spawners, buffer); remote = core_vector_index_of(&table1->spawners, &name) + 1; remote %= core_vector_size(&table1->spawners); script = SCRIPT_TABLE; thorium_message_init(&spawn_message, ACTION_SPAWN, sizeof(script), &script); thorium_actor_send(actor, *(int *)core_vector_at(&table1->spawners, remote), &spawn_message); /* printf("sending notification\n"); thorium_message_init(message, ACTION_TABLE_NOTIFY, 0, NULL); thorium_actor_send(actor, 0, message); */ } else if (tag == ACTION_SPAWN_REPLY) { new_actor= *(int *)buffer; printf("Actor %i receives ACTION_SPAWN_REPLY from actor %i," " new actor is %d\n", name, source, new_actor); thorium_message_init(message, ACTION_TABLE_DIE2, 0, NULL); thorium_actor_send(actor, new_actor, message); thorium_message_init(message, ACTION_TABLE_NOTIFY, 0, NULL); thorium_actor_send(actor, core_vector_at_as_int(&table1->spawners, 0), message); } else if (tag == ACTION_TABLE_DIE2) { printf("Actor %i receives ACTION_TABLE_DIE2 from actor %i\n", name, source); if (name < core_vector_size(&table1->spawners)) { return; } thorium_message_init(message, ACTION_STOP, 0, NULL); thorium_actor_send(actor, name, message); } else if (tag == ACTION_TABLE_DIE) { printf("Actor %i receives ACTION_TABLE_DIE from actor %i\n", name, source); thorium_message_init(message, ACTION_STOP, 0, NULL); thorium_actor_send(actor, name, message); } else if (tag == ACTION_TABLE_NOTIFY) { printf("Actor %i receives ACTION_TABLE_NOTIFY from actor %i\n", name, source); table1->done++; if (table1->done == core_vector_size(&table1->spawners)) { printf("actor %d kills %d to %d\n", name, 0, (int)core_vector_size(&table1->spawners) - 1); thorium_message_init(message, ACTION_TABLE_DIE, 0, NULL); thorium_actor_send_range(actor, &table1->spawners, message); } } }
/* * Basically, this actor does this: * - spawn visitors * - let them visit stuff * - kill them. * - spawn walkers * - let them walk * - kill the walkers * - return OK */ void biosal_unitig_manager_receive(struct thorium_actor *self, struct thorium_message *message) { struct biosal_unitig_manager *concrete_self; int tag; void *buffer; int spawner; int expected; int script; int actor_count; int source; struct core_string file_name; char *directory; int argc; char **argv; char *path; tag = thorium_message_action(message); source = thorium_message_source(message); buffer = thorium_message_buffer(message); concrete_self = (struct biosal_unitig_manager *)thorium_actor_concrete_actor(self); if (tag == ACTION_START) { core_vector_unpack(&concrete_self->spawners, buffer); spawner = thorium_actor_get_random_spawner(self, &concrete_self->spawners); concrete_self->state = STATE_SPAWN_WRITER; thorium_actor_send_int(self, spawner, ACTION_SPAWN, SCRIPT_WRITER_PROCESS); } else if (tag == ACTION_SPAWN_REPLY && concrete_self->state == STATE_SPAWN_WRITER) { thorium_message_unpack_int(message, 0, &concrete_self->writer_process); /* * open the file now. */ argc = thorium_actor_argc(self); argv = thorium_actor_argv(self); directory = core_command_get_output_directory(argc, argv); core_string_init(&file_name, directory); core_string_append(&file_name, "/"); core_string_append(&file_name, "unitigs.fasta"); path = core_string_get(&file_name); thorium_actor_send_buffer(self, concrete_self->writer_process, ACTION_OPEN, strlen(path) + 1, path); core_string_destroy(&file_name); } else if (tag == ACTION_OPEN_REPLY && source == concrete_self->writer_process) { /* * Spawn visitors. */ concrete_self->state = STATE_VISITORS; thorium_actor_send_to_self_empty(self, ACTION_PING); } else if (tag == ACTION_PING) { spawner = thorium_actor_get_random_spawner(self, &concrete_self->spawners); thorium_actor_send_int(self, spawner, ACTION_SPAWN, SCRIPT_MANAGER); } else if (tag == ACTION_SPAWN_REPLY) { thorium_message_unpack_int(message, 0, &concrete_self->manager); script = SCRIPT_UNITIG_VISITOR; if (concrete_self->state == STATE_WALKERS) { script = SCRIPT_UNITIG_WALKER; } thorium_actor_send_int(self, concrete_self->manager, ACTION_MANAGER_SET_SCRIPT, script); } else if (tag == ACTION_ASK_TO_STOP) { thorium_actor_send_empty(self, concrete_self->writer_process, ACTION_ASK_TO_STOP); thorium_actor_send_empty(self, concrete_self->manager, ACTION_ASK_TO_STOP); thorium_actor_send_to_self_empty(self, ACTION_STOP); thorium_actor_send_reply_empty(self, ACTION_ASK_TO_STOP_REPLY); } else if (tag == ACTION_MANAGER_SET_SCRIPT_REPLY) { actor_count = UNITIG_VISITOR_COUNT_PER_WORKER; if (concrete_self->state == STATE_WALKERS) actor_count = UNITIG_WALKER_COUNT_PER_WORKER; thorium_actor_send_reply_int(self, ACTION_MANAGER_SET_ACTORS_PER_WORKER, actor_count); } else if (tag == ACTION_MANAGER_SET_ACTORS_PER_WORKER_REPLY) { thorium_actor_send_reply_vector(self, ACTION_START, &concrete_self->spawners); } else if (tag == ACTION_START_REPLY && concrete_self->state == STATE_VISITORS && core_vector_size(&concrete_self->visitors) == 0) { core_vector_unpack(&concrete_self->visitors, buffer); printf("DEBUG the system has %d visitors\n", (int)core_vector_size(&concrete_self->visitors)); thorium_actor_send_to_supervisor_empty(self, ACTION_START_REPLY); } else if (tag == ACTION_START_REPLY && concrete_self->state == STATE_WALKERS && core_vector_size(&concrete_self->walkers) == 0) { core_vector_unpack(&concrete_self->walkers, buffer); printf("DEBUG the system has %d walkers\n", (int)core_vector_size(&concrete_self->walkers)); core_timer_start(&concrete_self->timer); concrete_self->completed = 0; thorium_actor_send_range_int(self, &concrete_self->walkers, ACTION_SET_CONSUMER, concrete_self->writer_process); thorium_actor_send_range_vector(self, &concrete_self->walkers, ACTION_START, &concrete_self->graph_stores); } else if (tag == ACTION_SET_PRODUCERS) { core_vector_unpack(&concrete_self->graph_stores, buffer); core_timer_start(&concrete_self->timer); concrete_self->completed = 0; thorium_actor_send_range_vector(self, &concrete_self->visitors, ACTION_START, &concrete_self->graph_stores); } else if (tag == ACTION_START_REPLY && concrete_self->state == STATE_VISITORS) { ++concrete_self->completed; expected = core_vector_size(&concrete_self->visitors); if (concrete_self->completed % UNITIG_VISITOR_COUNT_PER_WORKER == 0 || concrete_self->completed == expected) { printf("PROGRESS unitig visitors %d/%d\n", concrete_self->completed, expected); } if (concrete_self->completed == expected) { core_timer_stop(&concrete_self->timer); core_timer_print_with_description(&concrete_self->timer, "Visit vertices for unitigs"); /* * Stop the visitor manager and all visitors too. */ thorium_actor_send_empty(self, concrete_self->manager, ACTION_ASK_TO_STOP); /* * Reset graph stores. */ thorium_actor_send_range_empty(self, &concrete_self->graph_stores, ACTION_RESET); concrete_self->completed = 0; } } else if (tag == ACTION_RESET_REPLY) { ++concrete_self->completed; expected = core_vector_size(&concrete_self->graph_stores); if (concrete_self->completed == expected) { concrete_self->completed = 0; concrete_self->state = STATE_WALKERS; /* * Go back at the beginning. */ thorium_actor_send_to_self_empty(self, ACTION_PING); } } else if (tag == ACTION_START_REPLY && concrete_self->state == STATE_WALKERS) { ++concrete_self->completed; expected = core_vector_size(&concrete_self->walkers); if (concrete_self->completed % UNITIG_WALKER_COUNT_PER_WORKER == 0 || concrete_self->completed == expected) { printf("PROGRESS unitig walkers %d/%d\n", concrete_self->completed, expected); } if (concrete_self->completed == expected) { core_timer_stop(&concrete_self->timer); core_timer_print_with_description(&concrete_self->timer, "Walk for unitigs"); thorium_actor_send_to_supervisor_empty(self, ACTION_SET_PRODUCERS_REPLY); } } }
void biosal_assembly_graph_store_mark_vertex_as_visited(struct thorium_actor *self, struct thorium_message *message) { struct biosal_assembly_graph_store *concrete_self; char *buffer; int source; int path_index; char *sequence; struct core_memory_pool *ephemeral_memory; struct biosal_dna_kmer kmer; struct biosal_dna_kmer storage_kmer; struct biosal_assembly_vertex *canonical_vertex; int position; void *key; int force; force = 1; position = 0; concrete_self = thorium_actor_concrete_actor(self); source = thorium_message_source(message); buffer = thorium_message_buffer(message); ephemeral_memory = thorium_actor_get_ephemeral_memory(self); /* * Get the kmer. */ biosal_dna_kmer_init_empty(&kmer); position += biosal_dna_kmer_unpack(&kmer, buffer, concrete_self->kmer_length, ephemeral_memory, &concrete_self->transport_codec); sequence = core_memory_pool_allocate(ephemeral_memory, concrete_self->kmer_length + 1); biosal_dna_kmer_get_sequence(&kmer, sequence, concrete_self->kmer_length, &concrete_self->transport_codec); biosal_dna_kmer_init(&storage_kmer, sequence, &concrete_self->storage_codec, ephemeral_memory); /* * Get store key */ key = core_memory_pool_allocate(ephemeral_memory, concrete_self->key_length_in_bytes); biosal_dna_kmer_pack_store_key(&storage_kmer, key, concrete_self->kmer_length, &concrete_self->storage_codec, ephemeral_memory); /* Get vertex. */ canonical_vertex = core_map_get(&concrete_self->table, key); biosal_dna_kmer_destroy(&kmer, ephemeral_memory); biosal_dna_kmer_destroy(&storage_kmer, ephemeral_memory); core_memory_pool_free(ephemeral_memory, key); core_memory_pool_free(ephemeral_memory, sequence); position += thorium_message_unpack_int(message, position, &path_index); /* * At this point, mark the vertex with flag BIOSAL_VERTEX_FLAG_USED * so that any other actor that attempt to grab it will have to communicate * with the actor. */ /* * This is a good idea to always update with the last one. */ if (force || !biosal_assembly_vertex_get_flag(canonical_vertex, BIOSAL_VERTEX_FLAG_USED)) { biosal_assembly_graph_store_mark_as_used(self, canonical_vertex, source, path_index); } #if 0 #endif thorium_actor_send_reply_empty(self, ACTION_MARK_VERTEX_AS_VISITED_REPLY); }
void biosal_input_controller_receive(struct thorium_actor *actor, struct thorium_message *message) { int tag; int count; char *file; void *buffer; struct biosal_input_controller *controller; struct biosal_input_controller *concrete_actor; int destination; int script; int stream; char *local_file; int i; int name; int source; int destination_index; struct thorium_message new_message; int error; int stream_index; int64_t entries; int64_t *bucket; int *int_bucket; int spawner; int command_name; int stream_name; int consumer; int consumer_index; int *bucket_for_requests; char *new_buffer; int new_count; int file_index; struct core_vector mega_blocks; struct core_vector_iterator vector_iterator; struct biosal_mega_block *mega_block; struct core_vector *vector_bucket; struct core_vector block_counts; uint64_t block_entries; int mega_block_index; uint64_t offset; struct biosal_mega_block *block; int acquaintance_index; if (thorium_actor_take_action(actor, message)) { return; } thorium_message_get_all(message, &tag, &count, &buffer, &source); name = thorium_actor_name(actor); controller = (struct biosal_input_controller *)thorium_actor_concrete_actor(actor); concrete_actor = controller; if (tag == ACTION_START) { core_vector_init(&concrete_actor->spawners, 0); core_vector_unpack(&concrete_actor->spawners, buffer); core_vector_resize(&concrete_actor->stores_per_spawner, core_vector_size(&concrete_actor->spawners)); for (i = 0; i < core_vector_size(&concrete_actor->spawners); i++) { int_bucket = (int *)core_vector_at(&concrete_actor->stores_per_spawner, i); *int_bucket = 0; spawner = core_vector_at_as_int(&concrete_actor->spawners, i); core_queue_enqueue(&concrete_actor->unprepared_spawners, &spawner); } concrete_actor->state = BIOSAL_INPUT_CONTROLLER_STATE_PREPARE_SPAWNERS; #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL printf("DEBUG preparing first spawner\n"); #endif thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_PREPARE_SPAWNERS); /* thorium_dispatcher_print(thorium_actor_dispatcher(actor)); */ } else if (tag == ACTION_ADD_FILE) { file = (char *)buffer; local_file = core_memory_allocate(strlen(file) + 1, MEMORY_CONTROLLER); strcpy(local_file, file); printf("controller %d ACTION_ADD_FILE %s\n", thorium_actor_name(actor), local_file); core_vector_push_back(&concrete_actor->files, &local_file); bucket = core_vector_at(&concrete_actor->files, core_vector_size(&concrete_actor->files) - 1); local_file = *(char **)bucket; #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG11 ACTION_ADD_FILE %s %p bucket %p index %d\n", local_file, local_file, (void *)bucket, core_vector_size(&concrete_actor->files) - 1); #endif thorium_actor_send_reply_empty(actor, ACTION_ADD_FILE_REPLY); } else if (tag == ACTION_SPAWN_REPLY) { if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_STORES) { biosal_input_controller_add_store(actor, message); return; } else if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_PREPARE_SPAWNERS) { concrete_actor->ready_spawners++; thorium_message_unpack_int(message, 0, &name); thorium_actor_send_empty(actor, name, ACTION_ASK_TO_STOP); thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_PREPARE_SPAWNERS); if (concrete_actor->ready_spawners == (int)core_vector_size(&concrete_actor->spawners)) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG all spawners are prepared\n"); #endif thorium_actor_send_to_supervisor_empty(actor, ACTION_START_REPLY); } return; } else if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_PARTITIONER) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG received spawn reply, state is spawn_partitioner\n"); #endif thorium_message_unpack_int(message, 0, &concrete_actor->partitioner); /* configure the partitioner */ destination = concrete_actor->partitioner; thorium_actor_send_int(actor, destination, ACTION_SEQUENCE_PARTITIONER_SET_BLOCK_SIZE, concrete_actor->block_size); thorium_actor_send_int(actor, destination, ACTION_SEQUENCE_PARTITIONER_SET_ACTOR_COUNT, core_vector_size(&concrete_actor->consumers)); core_vector_init(&block_counts, sizeof(uint64_t)); for (i = 0; i < core_vector_size(&concrete_actor->mega_block_vector); i++) { block = (struct biosal_mega_block *)core_vector_at(&concrete_actor->mega_block_vector, i); block_entries = biosal_mega_block_get_entries(block); core_vector_push_back_uint64_t(&block_counts, block_entries); } new_count = core_vector_pack_size(&block_counts); new_buffer = thorium_actor_allocate(actor, new_count); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG packed counts, %d bytes\n", count); #endif core_vector_pack(&block_counts, new_buffer); thorium_message_init(&new_message, ACTION_SEQUENCE_PARTITIONER_SET_ENTRY_VECTOR, new_count, new_buffer); thorium_actor_send(actor, destination, &new_message); core_vector_destroy(&block_counts); return; } else if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_READING_STREAMS) { thorium_message_unpack_int(message, 0, &stream); stream_index = stream; mega_block_index = core_vector_size(&concrete_actor->reading_streams); core_vector_push_back_int(&concrete_actor->reading_streams, stream_index); core_vector_push_back_int(&concrete_actor->partition_commands, -1); core_vector_push_back_int(&concrete_actor->stream_consumers, -1); stream_index = core_vector_size(&concrete_actor->reading_streams) - 1; mega_block = (struct biosal_mega_block *)core_vector_at(&concrete_actor->mega_block_vector, mega_block_index); offset = biosal_mega_block_get_offset(mega_block); core_map_add_value(&concrete_actor->assigned_blocks, &stream_index, &mega_block_index); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("DEBUG setting offset to %" PRIu64 " for stream/%d\n", offset, stream); #endif thorium_actor_send_uint64_t(actor, stream, ACTION_INPUT_STREAM_SET_START_OFFSET, offset); return; } stream = *(int *)buffer; file_index = core_vector_size(&concrete_actor->counting_streams); local_file = *(char **)core_vector_at(&concrete_actor->files, file_index); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("DEBUG actor %d receives stream %d from spawner %d for file %s\n", name, stream, source, local_file); #endif core_vector_push_back(&concrete_actor->counting_streams, &stream); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("asking stream/%d to open %s\n", stream, local_file); #endif thorium_message_init(&new_message, ACTION_INPUT_OPEN, strlen(local_file) + 1, local_file); #ifdef DEBUG_ISSUE_594 thorium_message_print(&new_message); printf("SEND Buffer %s\n", local_file); #endif thorium_actor_send(actor, stream, &new_message); thorium_message_destroy(&new_message); if (core_vector_size(&concrete_actor->counting_streams) != core_vector_size(&concrete_actor->files)) { thorium_actor_send_to_self_empty(actor, ACTION_INPUT_SPAWN); } #ifdef DEBUG_ISSUE_594 printf("EXIT Buffer %s\n", local_file); #endif } else if (tag == ACTION_INPUT_OPEN_REPLY) { if (concrete_actor->state == BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_READING_STREAMS) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_READING_STREAMS printf("DEBUG receives open.reply for reading stream/%d\n", source); #endif concrete_actor->opened_streams++; if (concrete_actor->opened_streams == core_vector_size(&concrete_actor->mega_block_vector)) { thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_CREATE_STORES); } return; } concrete_actor->opened_streams++; stream = source; thorium_message_unpack_int(message, 0, &error); if (error == BIOSAL_INPUT_ERROR_NO_ERROR) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG actor %d asks %d ACTION_INPUT_COUNT_IN_PARALLEL\n", name, stream); #endif thorium_actor_send_vector(actor, stream, ACTION_INPUT_COUNT_IN_PARALLEL, &concrete_actor->spawners); } else { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG actor %d received error %d from %d\n", name, error, stream); #endif concrete_actor->counted++; } /* if all streams failed, notice supervisor */ if (concrete_actor->counted == core_vector_size(&concrete_actor->files)) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 #endif printf("DEBUG %d: Error all streams failed.\n", thorium_actor_name(actor)); thorium_actor_send_to_supervisor_empty(actor, ACTION_INPUT_DISTRIBUTE_REPLY); } /* if (concrete_actor->opened_streams == core_vector_size(&concrete_actor->files)) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG controller %d sends ACTION_INPUT_DISTRIBUTE_REPLY to supervisor %d [%d/%d]\n", name, thorium_actor_supervisor(actor), concrete_actor->opened_streams, core_vector_size(&concrete_actor->files)); #endif } */ } else if (tag == ACTION_INPUT_COUNT_PROGRESS) { stream_index = core_vector_index_of(&concrete_actor->counting_streams, &source); local_file = core_vector_at_as_char_pointer(&concrete_actor->files, stream_index); thorium_message_unpack_int64_t(message, 0, &entries); bucket = (int64_t *)core_vector_at(&concrete_actor->counts, stream_index); printf("controller/%d receives progress from stream/%d file %s %" PRIu64 " entries so far\n", name, source, local_file, entries); *bucket = entries; } else if (tag == ACTION_INPUT_COUNT_IN_PARALLEL_REPLY) { stream_index = core_vector_index_of(&concrete_actor->counting_streams, &source); local_file = core_vector_at_as_char_pointer(&concrete_actor->files, stream_index); core_vector_init(&mega_blocks, 0); core_vector_unpack(&mega_blocks, buffer); printf("DEBUG receive mega blocks from %d\n", source); /* * Update the file index for every mega block. */ core_vector_iterator_init(&vector_iterator, &mega_blocks); bucket = (int64_t*)core_vector_at(&concrete_actor->counts, stream_index); (*bucket) = 0; while (core_vector_iterator_has_next(&vector_iterator)) { core_vector_iterator_next(&vector_iterator, (void **)&mega_block); printf("SETTING setting file to %d for mega block\n", stream_index); biosal_mega_block_set_file(mega_block, stream_index); entries = biosal_mega_block_get_entries_from_start(mega_block); printf("Cataloging %d ENTRIES\n", (int)entries); (*bucket) = entries; biosal_mega_block_print(mega_block); } core_vector_iterator_destroy(&vector_iterator); vector_bucket = (struct core_vector *)core_map_add(&concrete_actor->mega_blocks, &stream_index); core_vector_init_copy(vector_bucket, &mega_blocks); core_vector_destroy(&mega_blocks); concrete_actor->counted++; printf("controller/%d received from stream/%d for file %s %" PRIu64 " entries (final) %d/%d\n", name, source, local_file, entries, concrete_actor->counted, (int)core_vector_size(&concrete_actor->files)); thorium_actor_send_reply_empty(actor, ACTION_INPUT_CLOSE); /* continue work here, tell supervisor about it */ if (concrete_actor->counted == core_vector_size(&concrete_actor->files)) { thorium_actor_send_to_self_empty(actor, ACTION_INPUT_CONTROLLER_SPAWN_READING_STREAMS); } } else if (tag == ACTION_INPUT_DISTRIBUTE) { core_timer_start(&concrete_actor->input_timer); core_timer_start(&concrete_actor->counting_timer); /* for each file, spawn a stream to count */ /* no files, return immediately */ if (core_vector_size(&concrete_actor->files) == 0) { printf("Error: no file to distribute...\n"); thorium_actor_send_reply_empty(actor, ACTION_INPUT_DISTRIBUTE_REPLY); return; } #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG actor %d receives ACTION_INPUT_DISTRIBUTE\n", name); #endif #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG send ACTION_INPUT_SPAWN to self\n"); #endif thorium_actor_send_to_self_empty(actor, ACTION_INPUT_SPAWN); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG resizing counts to %d\n", core_vector_size(&concrete_actor->files)); #endif core_vector_resize(&concrete_actor->counts, core_vector_size(&concrete_actor->files)); for (i = 0; i < core_vector_size(&concrete_actor->counts); i++) { bucket = (int64_t*)core_vector_at(&concrete_actor->counts, i); *bucket = 0; } } else if (tag == ACTION_INPUT_SPAWN && source == name) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG ACTION_INPUT_SPAWN\n"); #endif script = SCRIPT_INPUT_STREAM; concrete_actor->state = BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_STREAMS; /* the next file name to send is the current number of streams */ i = core_vector_size(&concrete_actor->counting_streams); destination_index = i % core_vector_size(&concrete_actor->spawners); destination = *(int *)core_vector_at(&concrete_actor->spawners, destination_index); thorium_message_init(message, ACTION_SPAWN, sizeof(script), &script); thorium_actor_send(actor, destination, message); bucket = core_vector_at(&concrete_actor->files, i); local_file = *(char **)core_vector_at(&concrete_actor->files, i); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 printf("DEBUG890 local_file %p bucket %p index %d\n", local_file, (void *)bucket, i); #endif #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG actor %d spawns a stream for file %d/%d via spawner %d\n", name, i, core_vector_size(&concrete_actor->files), destination); #endif /* also, spawn 4 stores on each node */ } else if (tag == ACTION_ASK_TO_STOP && ( source == thorium_actor_supervisor(actor) || source == thorium_actor_name(actor))) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_LEVEL_2 #endif /* stop streams */ for (i = 0; i < core_vector_size(&concrete_actor->counting_streams); i++) { stream = *(int *)core_vector_at(&concrete_actor->counting_streams, i); thorium_actor_send_empty(actor, stream, ACTION_ASK_TO_STOP); } for (i = 0; i < core_vector_size(&concrete_actor->reading_streams); i++) { stream = *(int *)core_vector_at(&concrete_actor->reading_streams, i); thorium_actor_send_empty(actor, stream, ACTION_ASK_TO_STOP); } #if 0 /* stop data stores */ for (i = 0; i < core_vector_size(&concrete_actor->consumers); i++) { store = core_vector_at_as_int(&concrete_actor->consumers, i); thorium_actor_send_empty(actor, store, ACTION_ASK_TO_STOP); } #endif /* stop partitioner */ if (concrete_actor->partitioner != THORIUM_ACTOR_NOBODY) { thorium_actor_send_empty(actor, concrete_actor->partitioner, ACTION_ASK_TO_STOP); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG controller %d sends ACTION_ASK_TO_STOP_REPLY to %d\n", thorium_actor_name(actor), thorium_message_source(message)); #endif } thorium_actor_send_reply_empty(actor, ACTION_ASK_TO_STOP_REPLY); /* stop self */ thorium_actor_send_to_self_empty(actor, ACTION_STOP); thorium_actor_ask_to_stop(actor, message); printf("DEBUG controller %d dies\n", name); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG #endif } else if (tag == ACTION_INPUT_CONTROLLER_CREATE_PARTITION && source == name) { spawner = *(int *)core_vector_at(&concrete_actor->spawners, core_vector_size(&concrete_actor->spawners) / 2); thorium_actor_send_int(actor, spawner, ACTION_SPAWN, SCRIPT_SEQUENCE_PARTITIONER); concrete_actor->state = BIOSAL_INPUT_CONTROLLER_STATE_SPAWN_PARTITIONER; #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG input controller %d spawns a partitioner via spawner %d\n", name, spawner); #endif } else if (tag == ACTION_SEQUENCE_PARTITIONER_COMMAND_IS_READY) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG controller receives ACTION_SEQUENCE_PARTITIONER_COMMAND_IS_READY, asks for command\n"); #endif thorium_actor_send_reply_empty(actor, ACTION_SEQUENCE_PARTITIONER_GET_COMMAND); } else if (tag == ACTION_SEQUENCE_PARTITIONER_GET_COMMAND_REPLY) { biosal_input_controller_receive_command(actor, message); } else if (tag == ACTION_SEQUENCE_PARTITIONER_FINISHED) { thorium_actor_send_empty(actor, concrete_actor->partitioner, ACTION_ASK_TO_STOP); biosal_input_controller_verify_requests(actor, message); } else if (tag == ACTION_SEQUENCE_PARTITIONER_PROVIDE_STORE_ENTRY_COUNTS) { biosal_input_controller_receive_store_entry_counts(actor, message); } else if (tag == ACTION_RESERVE_REPLY) { concrete_actor->ready_consumers++; printf("DEBUG marker ACTION_RESERVE_REPLY %d/%d\n", concrete_actor->ready_consumers, (int)core_vector_size(&concrete_actor->consumers)); if (concrete_actor->ready_consumers == core_vector_size(&concrete_actor->consumers)) { concrete_actor->ready_consumers = 0; printf("DEBUG all consumers are ready\n"); thorium_actor_send_empty(actor, concrete_actor->partitioner, ACTION_SEQUENCE_PARTITIONER_PROVIDE_STORE_ENTRY_COUNTS_REPLY); } } else if (tag == ACTION_INPUT_PUSH_SEQUENCES_READY) { #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG biosal_input_controller_receive received ACTION_INPUT_PUSH_SEQUENCES_READY\n"); #endif stream_name = source; acquaintance_index = stream_name; stream_index = core_vector_index_of(&concrete_actor->reading_streams, &acquaintance_index); command_name = *(int *)core_vector_at(&concrete_actor->partition_commands, stream_index); thorium_actor_send_int(actor, concrete_actor->partitioner, ACTION_SEQUENCE_PARTITIONER_GET_COMMAND_REPLY_REPLY, command_name); } else if (tag == ACTION_INPUT_PUSH_SEQUENCES_REPLY) { stream_name = source; thorium_message_unpack_int(message, 0, &consumer); consumer_index = core_vector_index_of(&concrete_actor->consumers, &consumer); bucket_for_requests = (int *)core_vector_at(&concrete_actor->consumer_active_requests, consumer_index); (*bucket_for_requests)--; biosal_input_controller_verify_requests(actor, message); #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG_CONSUMERS printf("DEBUG consumer # %d has %d active requests\n", consumer_index, *bucket_for_requests); #endif } else if (tag == ACTION_SET_CONSUMERS) { core_vector_init(&concrete_actor->consumers, 0); core_vector_unpack(&concrete_actor->consumers, buffer); printf("controller %d receives %d consumers\n", thorium_actor_name(actor), (int)core_vector_size(&concrete_actor->consumers)); for (i = 0; i < core_vector_size(&concrete_actor->consumers); i++) { core_vector_push_back_int(&concrete_actor->consumer_active_requests, 0); } #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG core_vector_print_int(&concrete_actor->consumers); printf("\n"); #endif thorium_actor_send_reply_empty(actor, ACTION_SET_CONSUMERS_REPLY); } else if (tag == ACTION_SET_BLOCK_SIZE) { thorium_message_unpack_int(message, 0, &concrete_actor->block_size); thorium_actor_send_reply_empty(actor, ACTION_SET_BLOCK_SIZE_REPLY); } else if (tag == ACTION_SEQUENCE_STORE_READY) { concrete_actor->filled_consumers++; #ifdef BIOSAL_INPUT_CONTROLLER_DEBUG printf("DEBUG ACTION_SEQUENCE_STORE_READY %d/%d\n", concrete_actor->filled_consumers, (int)core_vector_size(&concrete_actor->consumers)); #endif if (concrete_actor->filled_consumers == core_vector_size(&concrete_actor->consumers)) { concrete_actor->filled_consumers = 0; printf("DEBUG: all consumers are filled, sending ACTION_INPUT_DISTRIBUTE_REPLY\n"); core_timer_stop(&concrete_actor->input_timer); core_timer_stop(&concrete_actor->distribution_timer); core_timer_print_with_description(&concrete_actor->distribution_timer, "Load input / Distribute input data"); core_timer_print_with_description(&concrete_actor->input_timer, "Load input"); thorium_actor_send_to_supervisor_empty(actor, ACTION_INPUT_DISTRIBUTE_REPLY); } } }
void core_writer_process_receive(struct thorium_actor *self, struct thorium_message *message) { int action; int count; int source; char *buffer; char *file_name; struct core_writer_process *concrete_self; concrete_self = thorium_actor_concrete_actor(self); action = thorium_message_action(message); count = thorium_message_count(message); buffer = thorium_message_buffer(message); source = thorium_message_source(message); if (action == ACTION_OPEN) { if (concrete_self->has_file) { thorium_actor_log(self, "actor error, already open, can not open\n"); return; } file_name = buffer; core_buffered_file_writer_init(&concrete_self->writer, file_name); concrete_self->has_file = 1; thorium_actor_send_reply_empty(self, ACTION_OPEN_REPLY); } else if (action == ACTION_WRITE) { core_buffered_file_writer_write(&concrete_self->writer, buffer, count); thorium_actor_send_reply_empty(self, ACTION_WRITE_REPLY); } else if (action == ACTION_CLOSE) { if (!concrete_self->has_file) { thorium_actor_log(self, "Error, can not close a file that is not open\n"); return; } core_buffered_file_writer_destroy(&concrete_self->writer); concrete_self->has_file = 0; thorium_actor_send_reply_empty(self, ACTION_CLOSE_REPLY); } else if (action == ACTION_ASK_TO_STOP && source == thorium_actor_supervisor(self)) { /* * Close the file if it is open * right now. */ if (concrete_self->has_file) { core_buffered_file_writer_destroy(&concrete_self->writer); concrete_self->has_file = 0; } thorium_actor_send_to_self_empty(self, ACTION_STOP); thorium_actor_send_reply_empty(self, ACTION_ASK_TO_STOP_REPLY); } }
void biosal_input_stream_receive(struct thorium_actor *actor, struct thorium_message *message) { int tag; int source; uint64_t count; struct biosal_input_stream *concrete_self; int i; int has_sequence; int sequences; int sequence_index; int buffer_size; char *buffer; char *read_buffer; struct biosal_mega_block mega_block; char *file_name_in_buffer; if (thorium_actor_take_action(actor, message)) { return; } concrete_self = thorium_actor_concrete_actor(actor); tag = thorium_message_action(message); source = thorium_message_source(message); buffer = (char *)thorium_message_buffer(message); /* Do nothing if there is an error. * has_error returns the error to the source. */ /* if (biosal_input_stream_has_error(actor, message)) { return; } */ if (tag == ACTION_INPUT_OPEN) { #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG ACTION_INPUT_OPEN\n"); #endif if (concrete_self->open) { concrete_self->error = BIOSAL_INPUT_ERROR_ALREADY_OPEN; thorium_actor_send_reply_int(actor, ACTION_INPUT_OPEN_REPLY, concrete_self->error); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } concrete_self->open = 1; /* TODO: find out the maximum read length in some way */ concrete_self->maximum_sequence_length = BIOSAL_INPUT_MAXIMUM_SEQUENCE_LENGTH; concrete_self->buffer_for_sequence = (char *)core_memory_allocate(concrete_self->maximum_sequence_length, MEMORY_INPUT_STREAM); /*biosal_input_stream_init(actor);*/ #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG biosal_input_stream_receive open %s\n", buffer); #endif /*core_memory_copy(&concrete_self->file_index, buffer, sizeof(concrete_self->file_index));*/ file_name_in_buffer = buffer; printf("stream/%d (node/%d) opens file %s offset %" PRIu64 "\n", thorium_actor_name(actor), thorium_actor_node_name(actor), file_name_in_buffer, concrete_self->starting_offset); #ifdef DEBUG_ISSUE_594 thorium_message_print(message); printf("Buffer %s\n", buffer); #endif concrete_self->file_name = core_memory_allocate(strlen(file_name_in_buffer) + 1, MEMORY_INPUT_STREAM); strcpy(concrete_self->file_name, file_name_in_buffer); biosal_input_proxy_init(&concrete_self->proxy, concrete_self->file_name, concrete_self->starting_offset, concrete_self->ending_offset); concrete_self->proxy_ready = 1; /* Die if there is an error... */ if (biosal_input_stream_has_error(actor, message)) { #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG has error\n"); #endif thorium_actor_send_reply_int(actor, ACTION_INPUT_OPEN_REPLY, concrete_self->error); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } concrete_self->controller = source; /* no error here... */ thorium_actor_send_reply_int(actor, ACTION_INPUT_OPEN_REPLY, concrete_self->error); } else if (tag == ACTION_INPUT_COUNT) { /* count a little bit and yield the worker */ if (concrete_self->count_customer == THORIUM_ACTOR_NOBODY) { concrete_self->count_customer = source; } if (biosal_input_stream_check_open_error(actor, message)) { thorium_actor_send_reply_int64_t(actor, ACTION_INPUT_COUNT_REPLY, concrete_self->error); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG ACTION_INPUT_COUNT received...\n"); #endif i = 0; /* continue counting ... */ has_sequence = 1; while (i < concrete_self->granularity && has_sequence) { has_sequence = biosal_input_proxy_get_sequence(&concrete_self->proxy, concrete_self->buffer_for_sequence); #if 0 printf("Sequence= %s\n", concrete_self->buffer_for_sequence); #endif i++; } sequences = biosal_input_proxy_size(&concrete_self->proxy); #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG ACTION_INPUT_COUNT sequences %d...\n", sequences); #endif if (!has_sequence || sequences % concrete_self->mega_block_size == 0) { biosal_mega_block_init(&mega_block, -1, concrete_self->last_offset, sequences - concrete_self->last_entries, sequences); core_vector_push_back(&concrete_self->mega_blocks, &mega_block); concrete_self->last_entries = sequences; concrete_self->last_offset = biosal_input_proxy_offset(&concrete_self->proxy); thorium_actor_send_int64_t(actor, concrete_self->controller, ACTION_INPUT_COUNT_PROGRESS, sequences); } if (has_sequence) { /*printf("DEBUG yield\n");*/ thorium_actor_send_to_self_empty(actor, ACTION_YIELD); /* notify the controller of our progress... */ } else { thorium_actor_send_to_self_empty(actor, ACTION_INPUT_COUNT_READY); } } else if (tag == ACTION_YIELD_REPLY) { if (biosal_input_stream_check_open_error(actor, message)) { /* * it is not clear that there can be an error when receiving YIELD. error = concrete_self->error; thorium_actor_send_reply_int(actor, ACTION_INPUT_COUNT_REPLY, error); thorium_actor_send_to_self(actor, ACTION_ASK_TO_STOP); */ return; } thorium_actor_send_to_self_empty(actor, ACTION_INPUT_COUNT); } else if (tag == ACTION_INPUT_COUNT_READY) { if (biosal_input_stream_check_open_error(actor, message)) { return; } count = biosal_input_proxy_size(&concrete_self->proxy); thorium_actor_send_vector(actor, concrete_self->count_customer, ACTION_INPUT_COUNT_REPLY, &concrete_self->mega_blocks); printf("input_stream/%d on node/%d counted entries in %s, %" PRIu64 "\n", thorium_actor_name(actor), thorium_actor_node_name(actor), concrete_self->file_name, count); } else if (tag == ACTION_INPUT_CLOSE) { #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG destroy proxy\n"); #endif concrete_self->error = BIOSAL_INPUT_ERROR_NO_ERROR; if (biosal_input_stream_check_open_error(actor, message)) { concrete_self->error = BIOSAL_INPUT_ERROR_FILE_NOT_OPEN; thorium_message_init(message, ACTION_INPUT_CLOSE_REPLY, sizeof(concrete_self->error), &concrete_self->error); thorium_actor_send(actor, source, message); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); return; } thorium_message_init(message, ACTION_INPUT_CLOSE_REPLY, sizeof(concrete_self->error), &concrete_self->error); thorium_actor_send(actor, source, message); thorium_actor_send_to_self_empty(actor, ACTION_ASK_TO_STOP); #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("actor %d sending ACTION_INPUT_CLOSE_REPLY to %d\n", thorium_actor_name(actor), source); #endif } else if (tag == ACTION_INPUT_GET_SEQUENCE) { if (biosal_input_stream_check_open_error(actor, message)) { /* the error management could be better. */ concrete_self->error = BIOSAL_INPUT_ERROR_FILE_NOT_OPEN; thorium_message_init(message, ACTION_INPUT_GET_SEQUENCE_REPLY, sizeof(concrete_self->error), &concrete_self->error); thorium_actor_send(actor, source, message); return; } sequence_index = biosal_input_proxy_size(&concrete_self->proxy); /* TODO it would be clearer to use a struct to pack a int and a char [] * then to use the code below. */ read_buffer = concrete_self->buffer_for_sequence + sizeof(sequence_index); has_sequence = biosal_input_proxy_get_sequence(&concrete_self->proxy, read_buffer); if (!has_sequence) { thorium_message_init(message, ACTION_INPUT_GET_SEQUENCE_END, 0, NULL); thorium_actor_send(actor, source, message); return; } buffer_size = sizeof(sequence_index) + strlen(read_buffer) + 1; core_memory_copy(concrete_self->buffer_for_sequence, &sequence_index, sizeof(sequence_index)); thorium_message_init(message, ACTION_INPUT_GET_SEQUENCE_REPLY, buffer_size, concrete_self->buffer_for_sequence); thorium_actor_send(actor, source, message); } else if (tag == ACTION_INPUT_PUSH_SEQUENCES) { biosal_input_stream_push_sequences(actor, message); } else if (tag == ACTION_ASK_TO_STOP) { thorium_actor_send_to_self_empty(actor, ACTION_STOP); thorium_actor_send_range_empty(actor, &concrete_self->parallel_streams, ACTION_ASK_TO_STOP); thorium_actor_send_reply_empty(actor, ACTION_ASK_TO_STOP_REPLY); } else if (tag == ACTION_INPUT_STREAM_RESET) { /* fail silently */ if (!concrete_self->open) { thorium_actor_send_reply_empty(actor, ACTION_INPUT_STREAM_RESET_REPLY); return; } #ifdef BIOSAL_INPUT_STREAM_DEBUG printf("DEBUG ACTION_INPUT_STREAM_RESET\n"); #endif biosal_input_proxy_destroy(&concrete_self->proxy); biosal_input_proxy_init(&concrete_self->proxy, concrete_self->file_name, concrete_self->starting_offset, concrete_self->ending_offset); thorium_actor_send_reply_empty(actor, ACTION_INPUT_STREAM_RESET_REPLY); } else if (tag == ACTION_PUSH_SEQUENCE_DATA_BLOCK_REPLY) { thorium_actor_send_to_supervisor_int(actor, ACTION_INPUT_PUSH_SEQUENCES_REPLY, source); } }
static void source_receive(struct thorium_actor *self, struct thorium_message *message) { int action; void *buffer; int leader; int source; int count; struct source *concrete_self; int name; concrete_self = (struct source *)thorium_actor_concrete_actor(self); action = thorium_message_action(message); buffer = thorium_message_buffer(message); source = thorium_message_source(message); name = thorium_actor_name(self); count = thorium_message_count(message); if (action == ACTION_ASK_TO_STOP) { thorium_actor_log(self, "sent %d ACTION_PING messages\n", concrete_self->message_count); thorium_actor_send_to_self_empty(self, ACTION_STOP); } else if (action == ACTION_NOTIFY) { #ifdef LATENCY_PROBE_USE_MULTIPLEXER thorium_actor_send_to_self_empty(self, ACTION_ENABLE_MULTIPLEXER); #endif CORE_DEBUGGER_ASSERT(core_vector_empty(&concrete_self->targets)); core_vector_unpack(&concrete_self->targets, buffer); if (source_is_important(self)) { printf("%d (node %d worker %d) has %d targets\n", thorium_actor_name(self), thorium_actor_node_name(self), thorium_actor_worker_name(self), (int)core_vector_size(&concrete_self->targets)); } concrete_self->leader = source; source_send_ping(self); } else if (action == ACTION_PING_REPLY) { CORE_DEBUGGER_ASSERT(count == 0); ++concrete_self->message_count; CORE_DEBUGGER_ASSERT_IS_EQUAL_INT(count, 0); CORE_DEBUGGER_ASSERT_IS_NULL(buffer); if (concrete_self->message_count % PERIOD == 0 || concrete_self->event_count < 500) { if (source_is_important(self)) { printf("progress %d %d/%d\n", name, concrete_self->message_count, concrete_self->event_count); } } if (concrete_self->message_count == concrete_self->event_count) { leader = concrete_self->leader; thorium_actor_send_empty(self, leader, ACTION_NOTIFY_REPLY); if (source_is_important(self)) printf("%d (ACTION_PING sent: %d)" " sends ACTION_NOTIFY_REPLY to %d\n", thorium_actor_name(self), concrete_self->message_count, leader); } else { source_send_ping(self); } } }