void CalvinCHPQuantificationDetectionFileUpdaterTest::testQuantificationDetection()
{
CreateReferenceFile();
CalvinCHPQuantificationDetectionFileUpdater upd;
upd.Initialize(TEST_FILE);
upd.UpdateQuantification(0, 123.0f);
upd.UpdateQuantification(2, 222.0f);
upd.UpdateDetection(1, 0.22f);
CHPQuantificationDetectionData data;
CHPQuantificationDetectionFileReader reader;
CPPUNIT_ASSERT_NO_THROW(reader.SetFilename(TEST_FILE));
CPPUNIT_ASSERT_NO_THROW(reader.Read(data));
CPPUNIT_ASSERT(data.GetEntryCount() == 4);
ProbeSetQuantificationDetectionData e;
data.GetQuantificationDetectionEntry(0, e);
CPPUNIT_ASSERT(e.name == "1");
CPPUNIT_ASSERT_DOUBLES_EQUAL(e.quantification, 123.0f, 0.000001f);
CPPUNIT_ASSERT_DOUBLES_EQUAL(e.pvalue, 0.1f, 0.000001f);
data.GetQuantificationDetectionEntry(1, e);
CPPUNIT_ASSERT(e.name == "2");
CPPUNIT_ASSERT_DOUBLES_EQUAL(e.quantification, 20.0f, 0.000001f);
CPPUNIT_ASSERT_DOUBLES_EQUAL(e.pvalue, 0.22f, 0.000001f);
data.GetQuantificationDetectionEntry(2, e);
CPPUNIT_ASSERT(e.name == "3");
CPPUNIT_ASSERT_DOUBLES_EQUAL(e.quantification, 222.0f, 0.000001f);
CPPUNIT_ASSERT_DOUBLES_EQUAL(e.pvalue, 0.3f, 0.000001f);
data.GetQuantificationDetectionEntry(3, e);
CPPUNIT_ASSERT(e.name == "4");
CPPUNIT_ASSERT_DOUBLES_EQUAL(e.quantification, 40.0f, 0.000001f);
CPPUNIT_ASSERT_DOUBLES_EQUAL(e.pvalue, 0.4f, 0.000001f);
}
/*
* Read the file.
*/
bool FusionCHPQuantificationDetectionData::Read()
{
CHPQuantificationDetectionFileReader reader;
reader.SetFilename(filename);
try
{
reader.Read(chpData);
return true;
}
catch(...)
{
return false;
}
}
void CHPQuantificationDetectionFileReaderTest::testReadId()
{
CHPQuantificationDetectionData data;
CHPQuantificationDetectionFileReader reader;
CPPUNIT_ASSERT_NO_THROW(reader.SetFilename("../data/CHP_quantification_detection_file_id"));
CPPUNIT_ASSERT_NO_THROW(reader.Read(data));
CPPUNIT_ASSERT(data.GetFilename() == "../data/CHP_quantification_detection_file_id");
CPPUNIT_ASSERT(data.GetAlgName() == L"sig");
CPPUNIT_ASSERT(data.GetAlgVersion() == L"1.0");
CPPUNIT_ASSERT(data.GetArrayType() == L"test3");
CPPUNIT_ASSERT(data.GetEntryCount() == 2);
ParameterNameValueTypeList params = data.GetAlgParams();
CPPUNIT_ASSERT(params.size() == 1);
ParameterNameValueTypeList::iterator it=params.begin();
ParameterNameValueType param = *it;
CPPUNIT_ASSERT(param.GetName() == L"an1");
CPPUNIT_ASSERT(param.GetValueText() == L"av1");
params = data.GetSummaryParams();
CPPUNIT_ASSERT(params.size() == 1);
it=params.begin();
param = *it;
CPPUNIT_ASSERT(param.GetName() == L"sn1");
CPPUNIT_ASSERT(param.GetValueText() == L"sv1");
ProbeSetQuantificationDetectionData e;
data.GetQuantificationDetectionEntry(0, e);
CPPUNIT_ASSERT(e.id == 10);
CPPUNIT_ASSERT(e.quantification == 10.0f);
CPPUNIT_ASSERT(e.pvalue == 0.1f);
CPPUNIT_ASSERT(e.name == "");
data.GetQuantificationDetectionEntry(1, e);
CPPUNIT_ASSERT(e.id == 20);
CPPUNIT_ASSERT(e.quantification == 20.0f);
CPPUNIT_ASSERT(e.pvalue == 0.2f);
CPPUNIT_ASSERT(e.name == "");
}
