// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int H5CtfImporter::writeSliceData(hid_t fileId, CtfReader &reader, int z, int actualSlice)
{
// std::cout << "Writing Slice " << actualSlice << " as " << z << std::endl;
int err = 0;
// Start creating the HDF5 group structures for this file
hid_t ctfGroup = H5Utilities::createGroup(fileId, StringUtils::numToString(z));
if(ctfGroup < 0)
{
std::ostringstream ss;
ss << "H5CtfImporter Error: A Group for Z index " << z << " could not be created."
<< " Please check other error messages from the HDF5 library for possible reasons.";
setPipelineMessage(ss.str());
setErrorCondition(-500);
return -1;
}
hid_t gid = H5Utilities::createGroup(ctfGroup, Ebsd::H5::Header);
if(gid < 0)
{
std::ostringstream ss;
ss << "H5CtfImporter Error: The 'Header' Group for Z index " << z << " could not be created."
<< " Please check other error messages from the HDF5 library for possible reasons.";
progressMessage(ss.str(), 100);
err = H5Gclose(ctfGroup);
setPipelineMessage(ss.str());
setErrorCondition(-600);
return -1;
}
WRITE_EBSD_HEADER_STRING_DATA(reader, std::string, Prj, Ebsd::Ctf::Prj);
WRITE_EBSD_HEADER_STRING_DATA(reader, std::string, Author, Ebsd::Ctf::Author);
WRITE_EBSD_HEADER_STRING_DATA(reader, std::string, JobMode, Ebsd::Ctf::JobMode);
WRITE_EBSD_HEADER_DATA(reader, int, XCells, Ebsd::Ctf::XCells)
xDim = reader.getXCells();
WRITE_EBSD_HEADER_DATA(reader, int, YCells, Ebsd::Ctf::YCells)
yDim = reader.getYCells();
WRITE_EBSD_HEADER_DATA(reader, float, XStep, Ebsd::Ctf::XStep)
xRes = reader.getXStep();
WRITE_EBSD_HEADER_DATA(reader, float, YStep, Ebsd::Ctf::YStep)
yRes = reader.getYStep();
float* zPtr = reader.getZPointer();
if(NULL != zPtr)
{
WRITE_EBSD_HEADER_DATA(reader, int, ZCells, Ebsd::Ctf::ZCells)
zDim = reader.getZCells();
WRITE_EBSD_HEADER_DATA(reader, float, ZStep, Ebsd::Ctf::ZStep)
zRes = reader.getZStep();
}
