Пример #1
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MoveData::dataCheck()
{
  setErrorCondition(0);
  DataArrayPath amSrcPath = getAttributeMatrixSource();
  DataArrayPath amDestPath = getAttributeMatrixDestination();
  DataArrayPath daSrcPath = getDataArraySource();

  if (getWhatToMove() == k_MoveAttributeMatrix)
  {
    DataContainer::Pointer amDestDataContainer = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getDataContainerDestination());
    DataContainer::Pointer amSrcDataContainer = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, amSrcPath.getDataContainerName());
    AttributeMatrix::Pointer amSrcAttributeMatrix = getDataContainerArray()->getPrereqAttributeMatrixFromPath<AbstractFilter>(this, amSrcPath, -301);

    if(getErrorCondition() < 0) { return; }

    if (amSrcDataContainer->getName() == amDestDataContainer->getName())
    {
      QString ss = QObject::tr("The source and destination Data Container are the same.  Is this what you meant to do?");
      notifyWarningMessage(getHumanLabel(), ss, getErrorCondition());
      return;
    }

    amDestDataContainer->addAttributeMatrix(amSrcAttributeMatrix->getName(), amSrcAttributeMatrix);
    amSrcDataContainer->removeAttributeMatrix(amSrcAttributeMatrix->getName());
  }
  else if (getWhatToMove() == k_MoveDataArray )
  {
    AttributeMatrix::Pointer daSrcAttributeMatrix = getDataContainerArray()->getPrereqAttributeMatrixFromPath<AbstractFilter>(this, daSrcPath, -301);
    AttributeMatrix::Pointer daDestAttributeMatrix = getDataContainerArray()->getPrereqAttributeMatrixFromPath<AbstractFilter>(this, amDestPath, -301);
    IDataArray::Pointer daSrcDataArray = getDataContainerArray()->getPrereqIDataArrayFromPath<IDataArray, AbstractFilter>(this, daSrcPath);

    if(getErrorCondition() < 0) { return; }

    if (daDestAttributeMatrix->getNumTuples() != daSrcDataArray->getNumberOfTuples())
    {
      setErrorCondition(-11019);
      QString ss = QObject::tr("The number of tuples of source Attribute Array (%1) and destination Attribute Matrix (%2) do not match").arg(daSrcDataArray->getNumberOfTuples()).arg(daDestAttributeMatrix->getNumTuples());
      notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
      return;
    }
    else if (amSrcPath == amDestPath)
    {
      QString ss = QObject::tr("The source and destination Attribute Matrix are the same.  Is this what you meant to do?");
      notifyWarningMessage(getHumanLabel(), ss, getErrorCondition());
      return;
    }

    daDestAttributeMatrix->addAttributeArray(daSrcPath.getDataArrayName(), daSrcDataArray);
    daSrcAttributeMatrix->removeAttributeArray(daSrcPath.getDataArrayName());
  }
  else
  {
    setErrorCondition(-11020);
    QString ss = QObject::tr("Neither an Attribute Matrix nor an Attribute Array was selected to be moved");
    notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
    return;
  }
}
Пример #2
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MultiEmmpmFilter::execute()
{
  setErrorCondition(0);
  dataCheck();
  if (getErrorCondition() < 0) { return; }

  DataArrayPath inputAMPath = DataArrayPath::GetAttributeMatrixPath(getInputDataArrayVector());

  QList<QString> arrayNames = DataArrayPath::GetDataArrayNames(getInputDataArrayVector());
  QListIterator<QString> iter(arrayNames);

  QString msgPrefix = getMessagePrefix();
  int32_t i = 1;
  // This is the routine that sets up the EM/MPM to segment the image
  while (iter.hasNext())
  {
    DataArrayPath arrayPath = inputAMPath;
    QString name = iter.next();

    arrayPath.setDataArrayName(name);
    setInputDataArrayPath(arrayPath);

    // Change the output AttributeMatrix
    arrayPath.setAttributeMatrixName(getOutputAttributeMatrixName());
    QString outName = getOutputArrayPrefix() + arrayPath.getDataArrayName();
    arrayPath.setDataArrayName(outName);
    // Remove the array if it already exists ; this would be very strange but check for it anyway
    getDataContainerArray()->getAttributeMatrix(arrayPath)->removeAttributeArray(outName);
    setOutputDataArrayPath(arrayPath);

    QString prefix = QObject::tr("%1 (Array %2 of %3)").arg(msgPrefix).arg(i).arg(arrayNames.size());
    setMessagePrefix(prefix);
    if ( i == 2 && getUsePreviousMuSigma())
    {
      setEmmpmInitType(EMMPM_ManualInit);
    }
    else
    {
      setEmmpmInitType(EMMPM_Basic);
    }

    EMMPMFilter::execute();
    if (getErrorCondition() < 0) { break; }
    i++;

    if (getCancel()) { break; }
  }

  if (getErrorCondition() < 0)
  {
    QString ss = QObject::tr("Error occurred running the EM/MPM algorithm");
    setErrorCondition(-60009);
    notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
    return;
  }

  /* Let the GUI know we are done with this filter */
  notifyStatusMessage(getHumanLabel(), "Complete");
}
Пример #3
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int VertexGeom::writeXdmf(QTextStream& out, QString dcName, QString hdfFileName)
{
  herr_t err = 0;

  // Always start the grid
  out << "  <!-- *************** START OF " << dcName << " *************** -->" << "\n";
  out << "  <Grid Name=\"" << dcName << "\" GridType=\"Uniform\">" << "\n";

#if 0
  DataArrayPath dap = getTemporalDataPath();
  if(dap.isValid())
  {
    IDataArray::Pointer timeValues = getAttributeMatrix(dap.getAttributeMatrixName())->getAttributeArray(dap.getDataArrayName());
    Int32ArrayType::Pointer timeValuePtr = boost::dynamic_pointer_cast<Int32ArrayType>(timeValues);
    out << "    <Time TimeType=\"Single\" Value=\"" << timeValuePtr->getValue(0) << "\"/>\n";
  }
#endif

  out << "    <Topology TopologyType=\"Polyvertex\" NumberOfElements=\"" << getNumberOfVertices() << "\">" << "\n";
  out << "      <DataItem Format=\"HDF\" NumberType=\"Int\" Dimensions=\"" << getNumberOfVertices() << "\">" << "\n";
  out << "        " << hdfFileName << ":/DataContainers/" << dcName << "/" << DREAM3D::Geometry::Geometry << "/" << "Verts" << "\n";
  out << "      </DataItem>" << "\n";
  out << "    </Topology>" << "\n";

  out << "    <Geometry Type=\"XYZ\">" << "\n";
  out << "      <DataItem Format=\"HDF\"  Dimensions=\"" << getNumberOfVertices() << " 3\" NumberType=\"Float\" Precision=\"4\">" << "\n";
  out << "        " << hdfFileName << ":/DataContainers/" << dcName << "/" << DREAM3D::Geometry::Geometry << "/" << DREAM3D::Geometry::SharedVertexList << "\n";
  out << "      </DataItem>" << "\n";
  out << "    </Geometry>" << "\n";
  out << "" << "\n";

  return err;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void DataArraySelectionWidget::populateComboBoxes()
{
  //qDebug() << "-----------------------------------------------";
  //qDebug() << getFilter()->getHumanLabel() << "  " << getFilterParameter()->getHumanLabel() << " DataArraySelectionWidget::populateComboBoxes()";
  // Now get the DataContainerArray from the Filter instance
  // We are going to use this to get all the current DataContainers
  DataContainerArray::Pointer dca = getFilter()->getDataContainerArray();
  if(NULL == dca.get()) { return; }

  //qDebug() << getFilter()->getHumanLabel() << "  " << getFilterParameter()->getHumanLabel();
  // Grab what is currently selected
  QString curDcName = dataContainerCombo->currentText();
  QString curAmName = attributeMatrixCombo->currentText();
  QString curDaName = attributeArrayCombo->currentText();
  //qDebug() << "Current ComboBox Value: " << curDcName << "::" << curAmName << "::" << curDaName;

  // Check to see if we have any DataContainers to actually populate drop downs with.
  if(dca->getDataContainers().size() == 0)
  {
    dataContainerCombo->clear();
    attributeMatrixCombo->clear();
    attributeArrayCombo->clear();
    return;
  }
  // Cache the DataContainerArray Structure for our use during all the selections
  m_DcaProxy = DataContainerArrayProxy(dca.get());

  // Populate the DataContainerArray Combo Box with all the DataContainers
  QList<DataContainerProxy> dcList = m_DcaProxy.dataContainers.values();
  QListIterator<DataContainerProxy> iter(dcList);
  dataContainerCombo->clear();
  while(iter.hasNext() )
  {
    DataContainerProxy dc = iter.next();
    dataContainerCombo->addItem(dc.name);
//    if(dataContainerCombo->findText(dc.name) == -1 )
//    {
//      int index = dataContainerCombo->currentIndex();
//      dataContainerCombo->addItem(dc.name);
//      dataContainerCombo->setCurrentIndex(index);
//    }
  }

  // Get what is in the filter
  DataArrayPath selectedPath = getFilter()->property(PROPERTY_NAME_AS_CHAR).value<DataArrayPath>();

  // Split the path up to make sure we have a valid path separated by the "|" character
  QString filtDcName = selectedPath.getDataContainerName();
  QString filtAmName = selectedPath.getAttributeMatrixName();
  QString filtDaName = selectedPath.getDataArrayName();

  QString dcName;
  QString amName;
  QString daName;

  // If EVERYTHING is empty, then try the default value
  if(filtDcName.isEmpty() && filtAmName.isEmpty() && filtDaName.isEmpty()
      && curDcName.isEmpty() && curAmName.isEmpty() && curDaName.isEmpty() )
  {
    DataArrayPath daPath = getFilterParameter()->getDefaultValue().value<DataArrayPath>();
    dcName = daPath.getDataContainerName();
    amName = daPath.getAttributeMatrixName();
    daName = daPath.getDataArrayName();
  }
  else
  {
    // Now to figure out which one of these to use. If this is the first time through then what we picked up from the
    // gui will be empty strings because nothing is there. If there is something in the filter then we should use that.
    // If there is something in both of them and they are NOT equal then we have a problem. Use the flag m_DidCausePreflight
    // to determine if the change from the GUI should over ride the filter or vice versa. there is a potential that in future
    // versions that something else is driving DREAM3D and pushing the changes to the filter and we need to reflect those
    // changes in the GUI, like a testing script?

    dcName = checkStringValues(curDcName, filtDcName);
    if( !dca->doesDataContainerExist(dcName) ) { dcName = ""; }
    amName = checkStringValues(curAmName, filtAmName);
    if ( !dca->doesAttributeMatrixExist(DataArrayPath(dcName, amName, "") ) ) { amName = ""; }
    daName = checkStringValues(curDaName, filtDaName);
    if ( !dca->doesAttributeArrayExist(DataArrayPath(dcName, amName, daName) )) { daName = ""; }
  }

  bool didBlock = false;

  if (!dataContainerCombo->signalsBlocked()) { didBlock = true; }
  dataContainerCombo->blockSignals(true);
  int dcIndex = dataContainerCombo->findText(dcName);
  dataContainerCombo->setCurrentIndex(dcIndex);
  populateAttributeMatrixList();

  if(didBlock) { dataContainerCombo->blockSignals(false); didBlock = false; }
  if(!attributeMatrixCombo->signalsBlocked()) { didBlock = true; }
  attributeMatrixCombo->blockSignals(true);

  int amIndex = -1;
  if (dcIndex < 0)
  {
    attributeMatrixCombo->setCurrentIndex(-1);
    attributeArrayCombo->setCurrentIndex(-1);
  }
  else
  {
    amIndex = attributeMatrixCombo->findText(amName);
    attributeMatrixCombo->setCurrentIndex(amIndex);
    populateAttributeArrayList();
  }

  if(didBlock) { attributeMatrixCombo->blockSignals(false); didBlock = false; }
  if(!attributeArrayCombo->signalsBlocked()) { didBlock = true; }
  attributeArrayCombo->blockSignals(true);

  if (amIndex < 0)
  {
    attributeArrayCombo->setCurrentIndex(-1);
  }
  else
  {
    int daIndex = attributeArrayCombo->findText(daName);

    // The DataArray Name was empty, lets instantiate the filter and get the default value and try that
    if (daIndex < 0)
    {
      QVariant var = getFilterParameter()->getDefaultValue();
      DataArrayPath path = var.value<DataArrayPath>();
      daName = path.getDataArrayName(); // Pick up the DataArray Name from a Default instantiation of the filter
      daIndex = attributeArrayCombo->findText(daName);
    }

    attributeArrayCombo->setCurrentIndex(daIndex); // we set the selection but we are NOT triggering anything so we should
  }

  if(didBlock) { attributeArrayCombo->blockSignals(false); didBlock = false; }// not be triggering an infinte recursion of preflights

}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void DataArrayCreationWidget::populateComboBoxes()
{
  //  std::cout << "void DataArrayCreationWidget::populateComboBoxesWithSelection()" << std::endl;


  // Now get the DataContainerArray from the Filter instance
  // We are going to use this to get all the current DataContainers
  DataContainerArray::Pointer dca = getFilter()->getDataContainerArray();
  if(NULL == dca.get()) { return; }

  // Check to see if we have any DataContainers to actually populate drop downs with.
  if(dca->getDataContainers().size() == 0)
  {
    return;
  }
  // Cache the DataContainerArray Structure for our use during all the selections
  m_DcaProxy = DataContainerArrayProxy(dca.get());

  // Populate the DataContainer ComboBox
  FilterPararameterWidgetUtils::PopulateDataContainerComboBox<DataArrayCreationFilterParameter>(getFilter(), getFilterParameter(), dataContainerCombo, m_DcaProxy);

  // Grab what is currently selected
  QString curDcName = dataContainerCombo->currentText();
  QString curAmName = attributeMatrixCombo->currentText();
  QString curDaName = dataArrayName->text();

  // Get what is in the filter
  DataArrayPath selectedPath = getFilter()->property(PROPERTY_NAME_AS_CHAR).value<DataArrayPath>();

  // Split the path up to make sure we have a valid path separated by the "|" character

  QString filtDcName = selectedPath.getDataContainerName();
  QString filtAmName = selectedPath.getAttributeMatrixName();
  QString filtDaName = selectedPath.getDataArrayName();

  // Now to figure out which one of these to use. If this is the first time through then what we picked up from the
  // gui will be empty strings because nothing is there. If there is something in the filter then we should use that.
  // If there is something in both of them and they are NOT equal then we have a problem. Use the flag m_DidCausePreflight
  // to determine if the change from the GUI should over ride the filter or vice versa. there is a potential that in future
  // versions that something else is driving SIMPLView and pushing the changes to the filter and we need to reflect those
  // changes in the GUI, like a testing script?

  QString dcName = checkStringValues(curDcName, filtDcName);
  if( !dca->doesDataContainerExist(dcName) ) { dcName = ""; }
  QString amName = checkStringValues(curAmName, filtAmName);
  if ( !dca->doesAttributeMatrixExist(DataArrayPath(dcName, amName, "") ) ) { amName = ""; }
  QString daName = checkStringValues(curDaName, filtDaName);
  //if ( !dca->doesAttributeArrayExist(DataArrayPath(dcName, amName, daName) )) { daName = ""; }

  bool didBlock = false;

  if (!dataContainerCombo->signalsBlocked()) { didBlock = true; }
  dataContainerCombo->blockSignals(true);

  int dcIndex = dataContainerCombo->findText(dcName);
  dataContainerCombo->setCurrentIndex(dcIndex);
  FilterPararameterWidgetUtils::PopulateAttributeMatrixComboBox<DataArrayCreationFilterParameter>(getFilter(), getFilterParameter(), dataContainerCombo, attributeMatrixCombo, m_DcaProxy);

  if(didBlock) { dataContainerCombo->blockSignals(false); didBlock = false; }

  if(!attributeMatrixCombo->signalsBlocked()) { didBlock = true; }
  attributeMatrixCombo->blockSignals(true);

  if (dcIndex < 0)
  {
    attributeMatrixCombo->setCurrentIndex(-1);
  }
  else
  {
    int amIndex = attributeMatrixCombo->findText(amName);
    attributeMatrixCombo->setCurrentIndex(amIndex);
  }

  if(didBlock) { attributeMatrixCombo->blockSignals(false); didBlock = false; }


  if(!dataArrayName->signalsBlocked()) { didBlock = true; }
  dataArrayName->blockSignals(true);

  dataArrayName->setText(daName);

  if(didBlock) { dataArrayName->blockSignals(false); didBlock = false; }

}
Пример #6
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
QDebug operator<<(QDebug out, const DataArrayPath& v)
{
  out << v.getDataContainerName() << "|" << v.getAttributeMatrixName() << "|" << v.getDataArrayName();
  return out;
}
Пример #7
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void CropImageGeometry::execute()
{
  setErrorCondition(0);

  /* Normally, filters call dataCheck during the execute to reuse code.  Unfortunately, this cannot happen for this filter, because calling dataCheck
       would destroy an Attribute Matrix that we need during the execute.  Do not uncomment the code, and be careful when reusing code from either of
        these functions.  Make sure you understand how this works before you reuse any code. */
  //dataCheck();
  //if(getErrorCondition() < 0) { return; }

  DataContainer::Pointer srcCellDataContainer = getDataContainerArray()->getPrereqDataContainer<AbstractFilter>(this, getCellAttributeMatrixPath().getDataContainerName());
  AttributeMatrix::Pointer cellAttrMat = srcCellDataContainer->getAttributeMatrix(getCellAttributeMatrixPath().getAttributeMatrixName());
  DataContainer::Pointer destCellDataContainer = srcCellDataContainer;

  if (m_SaveAsNewDataContainer == true)
  {
    float ox = 0.0f, oy = 0.0f, oz = 0.0f, rx = 0.0f, ry = 0.0f, rz = 0.0f;
    srcCellDataContainer->getGeometryAs<ImageGeom>()->getOrigin(ox, oy, oz);
    srcCellDataContainer->getGeometryAs<ImageGeom>()->getResolution(rx, ry, rz);

    destCellDataContainer = getDataContainerArray()->createNonPrereqDataContainer<AbstractFilter>(this, getNewDataContainerName());
    ImageGeom::Pointer image = ImageGeom::CreateGeometry(DREAM3D::Geometry::ImageGeometry);
    destCellDataContainer->setGeometry(image);

    destCellDataContainer->getGeometryAs<ImageGeom>()->setOrigin(ox, oy, oz);
    destCellDataContainer->getGeometryAs<ImageGeom>()->setResolution(rx, ry, rz);

    AttributeMatrix::Pointer cellAttrMatCopy = cellAttrMat->deepCopy();
    destCellDataContainer->addAttributeMatrix(cellAttrMatCopy->getName(), cellAttrMatCopy);
    cellAttrMat = destCellDataContainer->getAttributeMatrix(getCellAttributeMatrixPath().getAttributeMatrixName());
  }

  if(NULL == destCellDataContainer.get() || NULL == cellAttrMat.get() || getErrorCondition() < 0)
  {
    return;
  }


  // No matter where the AM is (same DC or new DC), we have the correct DC and AM pointers...now it's time to crop
  int64_t totalPoints = cellAttrMat->getNumTuples();

  size_t udims[3] =
  { 0, 0, 0 };
  srcCellDataContainer->getGeometryAs<ImageGeom>()->getDimensions(udims);
#if (CMP_SIZEOF_SIZE_T == 4)
  typedef int32_t DimType;
#else
  typedef int64_t DimType;
#endif
  DimType dims[3] =
  { static_cast<DimType>(udims[0]), static_cast<DimType>(udims[1]), static_cast<DimType>(udims[2]), };

  // Check to see if the dims have actually changed.
  if(dims[0] == (m_XMax - m_XMin) && dims[1] == (m_YMax - m_YMin) && dims[2] == (m_ZMax - m_ZMin))
  {
    return;
  }

  // Get current origin
  float oldOrigin[3] = {0.0f, 0.0f, 0.0f};
  destCellDataContainer->getGeometryAs<ImageGeom>()->getOrigin(oldOrigin);

  // Check to make sure the new dimensions are not "out of bounds" and warn the user if they are
  if (dims[0] <= m_XMax)
  {
    QString ss = QObject::tr("The Max X value (%1) is greater than the Image Geometry X entent (%2)."
                             " This may lead to junk data being filled into the extra space.").arg(m_XMax).arg(dims[0]);
    setErrorCondition(-950);
    notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
    return;
  }
  if (dims[1] <= m_YMax)
  {

    QString ss = QObject::tr("The Max Y value (%1) is greater than the Image Geometry Y entent (%2)."
                             " This may lead to junk data being filled into the extra space.").arg(m_YMax).arg(dims[1]);
    setErrorCondition(-951);
    notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
    return;
  }
  if (dims[2] <= m_ZMax)
  {

    QString ss = QObject::tr("The Max Z value (%1) is greater than the Image Geometry Z entent (%2)."
                             " This may lead to junk data being filled into the extra space.").arg(m_ZMax).arg(dims[2]);
    setErrorCondition(-952);
    notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
    return;
  }

  int64_t XP = ( (m_XMax - m_XMin) + 1 );
  int64_t YP = ( (m_YMax - m_YMin) + 1 );
  int64_t ZP = ( (m_ZMax - m_ZMin) + 1 );

  int64_t col = 0, row = 0, plane = 0;
  int64_t colold = 0, rowold = 0, planeold = 0;
  int64_t index = 0;
  int64_t index_old = 0;
  QList<QString> voxelArrayNames = cellAttrMat->getAttributeArrayNames();
  for (int64_t i = 0; i < ZP; i++)
  {
    QString ss = QObject::tr("Cropping Volume - Slice %1 of %2 Complete").arg(i).arg(ZP);
    notifyStatusMessage(getMessagePrefix(), getHumanLabel(), ss);
    planeold = (i + m_ZMin) * (srcCellDataContainer->getGeometryAs<ImageGeom>()->getXPoints() * srcCellDataContainer->getGeometryAs<ImageGeom>()->getYPoints());
    plane = (i * XP * YP);
    for (int64_t j = 0; j < YP; j++)
    {
      rowold = (j + m_YMin) * srcCellDataContainer->getGeometryAs<ImageGeom>()->getXPoints();
      row = (j * XP);
      for (int64_t k = 0; k < XP; k++)
      {
        colold = (k + m_XMin);
        col = k;
        index_old = planeold + rowold + colold;
        index = plane + row + col;
        for (QList<QString>::iterator iter = voxelArrayNames.begin(); iter != voxelArrayNames.end(); ++iter)
        {
          IDataArray::Pointer p = cellAttrMat->getAttributeArray(*iter);
          p->copyTuple(index_old, index);
        }
      }
    }
  }
  destCellDataContainer->getGeometryAs<ImageGeom>()->setDimensions(static_cast<size_t>(XP), static_cast<size_t>(YP), static_cast<size_t>(ZP));
  totalPoints = destCellDataContainer->getGeometryAs<ImageGeom>()->getNumberOfElements();
  QVector<size_t> tDims(3, 0);
  tDims[0] = XP;
  tDims[1] = YP;
  tDims[2] = ZP;
  cellAttrMat->setTupleDimensions(tDims); // THIS WILL CAUSE A RESIZE of all the underlying data arrays.

  if (m_RenumberFeatures == true)
  {
    totalPoints = destCellDataContainer->getGeometryAs<ImageGeom>()->getNumberOfElements();

    // This just sanity checks to make sure there were existing features before the cropping
    AttributeMatrix::Pointer cellFeatureAttrMat = srcCellDataContainer->getAttributeMatrix(getCellFeatureAttributeMatrixPath().getAttributeMatrixName());
    size_t totalFeatures = cellFeatureAttrMat->getNumTuples();
    QVector<bool> activeObjects(totalFeatures, false);
    if (0 == totalFeatures)
    {
      setErrorCondition(-600);
      notifyErrorMessage(getHumanLabel(), "The number of Features is 0 and should be greater than 0", getErrorCondition());
      return;
    }

    //QVector<size_t> cDims(1, 1);
    DataArrayPath dap = getFeatureIdsArrayPath();
    if(getSaveAsNewDataContainer())
    {
      dap.setDataContainerName(getNewDataContainerName());
    }
    m_FeatureIdsPtr = cellAttrMat->getAttributeArrayAs<Int32ArrayType>(dap.getDataArrayName()); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
    if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
    { m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
    else
    {
      setErrorCondition(-601);
      QString ss = QObject::tr("The FeatureIds array with name '%1' was not found in the destination DataContainer. The expected path was '%2'")
                   .arg(dap.getDataArrayName()).arg(dap.serialize("/"));
      notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
      return;
    }

    // Find the unique set of feature ids
    for (int64_t i = 0; i < totalPoints; ++i)
    {
      int32_t currentFeatureId = m_FeatureIds[i];
      if (currentFeatureId < totalFeatures)
      {
        activeObjects[currentFeatureId] = true;
      }
      else
      {
        setErrorCondition(-601);
        QString ss = QObject::tr("The total number of Features from %1 is %2, but a value of %3 was found in DataArray %4.").arg(cellFeatureAttrMat->getName()).arg(totalFeatures).arg(currentFeatureId).arg(getFeatureIdsArrayPath().serialize("/"));
        qDebug() << ss;
        notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
        return;
      }
    }
    cellFeatureAttrMat->removeInactiveObjects(activeObjects, m_FeatureIdsPtr.lock());
  }

  if(m_UpdateOrigin == true)
  {
    float resolution[3] = {0.0f, 0.0f, 0.0f};
    destCellDataContainer->getGeometryAs<ImageGeom>()->getResolution(resolution);

    float origin[3] = {0.0f, 0.0f, 0.0f};
    destCellDataContainer->getGeometryAs<ImageGeom>()->getOrigin(origin);

    origin[0] = m_XMin * resolution[0] + oldOrigin[0];
    origin[1] = m_YMin * resolution[1] + oldOrigin[1];
    origin[2] = m_ZMin * resolution[2] + oldOrigin[2];

    destCellDataContainer->getGeometryAs<ImageGeom>()->setOrigin(origin);
  }

  notifyStatusMessage(getHumanLabel(), "Complete");
}