TEST_F(HDFCCSReaderTEST, ReadCCSFromBasH5) {
string fileName = baxFile2;
HDFCCSReader<CCSSequence> reader;
reader.InitializeDefaultIncludedFields();
ASSERT_EQ(reader.Initialize(fileName), 1);
ASSERT_EQ(reader.GetMovieName(),
"m130220_114643_42129_c100471902550000001823071906131347_s1_p0");
CCSSequence seq;
for(int i=0; i < 1000; i++) {
reader.GetNext(seq);
}
reader.Close();
}
TEST_F(HDFCCSReaderTEST, ReadCCSFromCCSH5) {
string fileName = ccsFile1;
HDFCCSReader<CCSSequence> reader;
reader.SetReadBasesFromCCS();
reader.InitializeDefaultIncludedFields();
ASSERT_EQ(reader.Initialize(fileName), 1);
ASSERT_EQ(reader.GetMovieName(),
"m130328_211423_ethan_c100499512550000001823070408081371_s1_p0");
CCSSequence seq;
for(int i=0; i < 1000; i++) {
reader.GetNext(seq);
}
reader.Close();
}