//=================================================================
bool BiconnectedTest::compute(const tlp::Graph* graph) {
if(graph->numberOfNodes() == 0) {
return true;
}
if (resultsBuffer.find(graph)!=resultsBuffer.end())
return resultsBuffer[graph];
MutableContainer<bool> mark;
mark.setAll(false);
MutableContainer<unsigned int> low;
MutableContainer<unsigned int> dfsNumber;
MutableContainer<node> supergraph;
unsigned int count = 1;
bool result = false;
Iterator<node> *it=graph->getNodes();
if (it->hasNext())
result=(biconnectedTest(graph,it->next(),mark,low,dfsNumber,supergraph,count));
delete it;
if (count!=graph->numberOfNodes()+1) {
result=false;
} //connected test
resultsBuffer[graph]=result;
graph->addListener(this);
return result;
}
unsigned int getDist(Graph *g, node n1, node n2) {
vector<node> nextNodes;
TLP_HASH_MAP<node, unsigned int> nodeDepth;
MutableContainer<bool> alreadyTreated;
bool found = false;
alreadyTreated.setAll(false);
nextNodes.push_back(n1);
nodeDepth[n1] = 0;
alreadyTreated.set(n1.id, true);
for (unsigned int i = 0; !found && i < nextNodes.size(); ++i) {
node current = nextNodes[i];
for (auto v : g->getInOutNodes(current)) {
if (alreadyTreated.get(v.id))
continue;
alreadyTreated.set(v.id, true);
nextNodes.push_back(v);
nodeDepth[v] = nodeDepth[current] + 1;
if (v == n2) {
found = true;
break;
}
}
}
return nodeDepth[n2];
}
//=================================================================
list<edge> posDFS(Graph *sG, MutableContainer<int> &dfsPos) {
list<edge> dfsEdges;
MutableContainer<int> dfsPre;
dfsPre.setAll(0);
unsigned int preCount = 0;
unsigned int postCount = 0;
for (auto n : sG->nodes()) {
if (dfsPre.get(n.id) == 0)
dfsAux(sG, n, dfsPre, dfsPos, dfsEdges, preCount, postCount);
}
return dfsEdges;
}
// Determines if the given graph is topologically a tree
bool TreeTest::isFreeTree(const Graph *graph, node curRoot) {
// do a dfs traversal from curRoot;
MutableContainer<bool> visited;
visited.setAll(false);
stack<dfsFreeTreeStruct> dfsLevels;
dfsFreeTreeStruct curParams(curRoot, curRoot, graph->getInOutNodes(curRoot));
dfsLevels.push(curParams);
while (!dfsLevels.empty()) {
curParams = dfsLevels.top();
curRoot = curParams.curRoot;
node cameFrom = curParams.cameFrom;
Iterator<node> *neighbours = curParams.neighbours;
// set neighbours member to nullptr
// to avoid twice deletion on exit
curParams.neighbours = nullptr;
if (!neighbours->hasNext()) {
dfsLevels.pop();
} else {
visited.set(curRoot.id, true);
// loop on remaining neighbours
while (neighbours->hasNext()) {
node curNode = neighbours->next();
// check self loop
if (curNode == curRoot) {
return false;
}
if (curNode != cameFrom) {
if (visited.get(curNode.id)) {
return false;
}
// go deeper in the dfs exploration
curParams.curRoot = curNode;
curParams.cameFrom = curRoot;
curParams.neighbours = graph->getInOutNodes(curNode);
dfsLevels.push(curParams);
break;
}
}
}
}
return true;
} // end isFreeTree
//====================================================
void EdgeExtremityGlyphManager::initGlyphList(Graph **graph,
GlGraphInputData* glGraphInputData, MutableContainer<
EdgeExtremityGlyph *>& glyphs) {
GlyphContext gc = GlyphContext(graph,
glGraphInputData);
glyphs.setAll(0);
static std::list<std::string> plugins = PluginLister::instance()->availablePlugins<EdgeExtremityGlyph>();
for(std::list<std::string>::const_iterator it = plugins.begin(); it != plugins.end(); ++it) {
string glyphName = *it;
EdgeExtremityGlyph *newGlyph = PluginLister::instance()->getPluginObject<EdgeExtremityGlyph>(glyphName, &gc);
glyphs.set(PluginLister::pluginInformation(glyphName).id(), newGlyph);
}
}
//=================================================================
list<edge> posDFS(Graph *sG,
MutableContainer<int> &dfsPos) {
list<edge> dfsEdges;
MutableContainer<int> dfsPre;
dfsPre.setAll(0);
preCount = postCount = 1;
StableIterator<node> it(sG->getNodes());
while (it.hasNext()) {
node n = it.next();
if (dfsPre.get(n.id) == 0)
dfsAux(sG, n, dfsPre, dfsPos, dfsEdges);
}
return dfsEdges;
}
/**
* \brief Set the ordering of edges around n according to their order in v.
*/
void GraphStorage::setEdgeOrder(const node n, const std::vector<edge> &v ) {
if (v.empty()) return;
MutableContainer<int> isEle;
isEle.setAll(0);
for (std::vector<edge>::const_iterator it=v.begin(); it!=v.end(); ++it) {
isEle.add(it->id, 1);
}
std::vector<edge>::const_iterator it2=v.begin();
EdgeVector& currentOrder = nodes[n.id].edges;
for (unsigned int i=0; i<currentOrder.size(); ++i) {
if ( isEle.get(currentOrder[i].id)>0 ) {
isEle.add(currentOrder[i].id, -1);
currentOrder[i] = *it2;
++it2;
}
}
}
bool run() {
result->setAllNodeValue(0.0);
result->setAllEdgeValue(0.0);
bool directed = false;
bool norm = false;
if ( dataSet!=NULL ) {
dataSet->get("directed",directed);
dataSet->get("norm", norm);
}
//Metric is 0 in this case
if(graph->numberOfNodes()<=2) return true;
Iterator<node> *it = graph->getNodes();
unsigned int count = 0;
while(it->hasNext()) {
if (pluginProgress->progress(count++,graph->numberOfNodes())!=TLP_CONTINUE) break;
node s = it->next();
stack<node> S;
TLP_HASH_MAP<node, list<node> > P;
MutableContainer<int> sigma;
sigma.setAll(0);
sigma.set(s.id,1);
MutableContainer<int> d;
d.setAll(-1);
d.set(s.id, 0);
queue<node> Q;
Q.push(s);
while(!Q.empty()) {
node v = Q.front();
Q.pop();
S.push(v);
Iterator<node> *it2;
if (directed)
it2 = graph->getOutNodes(v);
else
it2 = graph->getInOutNodes(v);
while (it2->hasNext()) {
node w = it2->next();
if (d.get(w.id)<0) {
Q.push(w);
d.set(w.id, d.get(v.id)+1);
}
if (d.get(w.id) == d.get(v.id)+1) {
sigma.add(w.id, sigma.get(v.id));
P[w].push_back(v);
}
}
delete it2;
}
MutableContainer<double> delta;
delta.setAll(0.0);
while(!S.empty()) {
node w = S.top();
S.pop();
list<node>::const_iterator itn = P[w].begin();
for (; itn!=P[w].end(); ++itn) {
node v = *itn;
delta.add(v.id, (double(sigma.get(v.id)) / double(sigma.get(w.id)) * (1.0 + delta.get(w.id))));
edge e = graph->existEdge(v,w,directed);
if(e.isValid())
result->setEdgeValue(e, result->getEdgeValue(e) + double(sigma.get(v.id)) / double(sigma.get(w.id)) * (1.0 + delta.get(w.id)));
}
if (w != s) result->setNodeValue(w, result->getNodeValue(w) + delta.get(w.id));
}
}
delete it;
//Normalization
if(norm || !directed) {
double n = graph->numberOfNodes();
it = graph->getNodes();
while(it->hasNext()) {
node s = it->next();
//In the undirected case, the metric must be divided by two, then
if(norm)
result->setNodeValue(s,result->getNodeValue(s)/((n-1.0)*(n-2.0)));
if(!directed)
result->setNodeValue(s,result->getNodeValue(s)/2.0);
}
delete it;
Iterator<edge> *itE = graph->getEdges();
while(itE->hasNext()) {
edge e = itE->next();
if(norm)
result->setEdgeValue(e,4.0*result->getEdgeValue(e)/(n*n));
if(!directed)
result->setEdgeValue(e,result->getEdgeValue(e)/(2.0));
}
delete itE;
}
return pluginProgress->state()!=TLP_CANCEL;
}
/*
* Algebric criteria to check the plane map...
*/
bool PlanarityTestImpl::isPlanarEmbedding(Graph *sG) {
int n = sG->numberOfNodes();
if (n == 1)
return true;
int m = sG->numberOfEdges();
unsigned int count = 0;
MutableContainer<char> considered;
MutableContainer<bool> sens;
considered.setAll(0);
sens.setAll(false);
int fc = 0;
// displayMap(sG);
for (int k=0; k<2; ++k) {
Iterator<edge> *it = sG->getEdges();
while (it->hasNext()) {
edge e = it->next();
if (considered.get(e.id)<2) {
count = 0;
// cerr << "Face : " << fc << " start edge:" << e.id << endl;
edge e1 = e;
node n, n_tmp;
if (sens.get(e.id))
n = sG->target(e1);
else
n = sG->source(e1);
// cerr << "-(" << e1.id << ")->" << n.id << flush;
n_tmp = n;
do {
considered.add(e1.id, 1);
EdgeMapIterator it(sG, e1, n);
e1 = it.next();
n = sG->opposite(e1,n);
if (sG->source(e1) == n)
sens.set(e1.id,true);
// cerr << "-(" << e1.id << ")->" << n.id << flush;
++count;
if (count > sG->numberOfEdges() +1) break;
}
while ((e1 != e)||(n != n_tmp));
fc++;
// cerr << endl;
}
}
delete it;
}
if (fc != m - n + 2) {
//cerr << __PRETTY_FUNCTION__ << " : not ok :( nb faces :" << fc << "!=" << m - n +2 << endl;
return false;
}
return true;
}
//#include <tulip/GraphImpl.h>
int PlanarityTestImpl::sortBackEdgesByDfs(Graph *sG,
node,
node repr,
list<edge>& listBackEdges,
vector<edge>& backEdge) {
// constructs a DFS tree of T_v^* to sort back-edges to embed;
// cerr << __PRETTY_FUNCTION__ << endl;
Graph *D = tlp::newGraph();
list<node> listNodes, listCNodes;
//map<node, node> nodeInD, nodeInG;
map<node,node> nodeInD, nodeInG;
nodeInD[repr] = D->addNode();
nodeInG[nodeInD[repr]] = repr;
// forall(e, listBackEdges)
for (list<edge>::iterator it = listBackEdges.begin(); it != listBackEdges.end(); it++) {
edge e = *it;
node u = sG->source(e);
node predU = NULL_NODE;
while (state.get(u.id) == NOT_VISITED) {
if (isCNode(u)) {
u = activeCNodeOf(false, u);
if (state.get(u.id) == NOT_VISITED)
listCNodes.push_back(u);
}
if (state.get(u.id) == NOT_VISITED) {
state.set(u.id, VISITED);
listNodes.push_back(u);
nodeInD[u] = D->addNode();
nodeInG[nodeInD[u]] = u;
}
if (predU != NULL_NODE)
D->addEdge(nodeInD[u], nodeInD[predU]);
predU = u;
u = parent.get(u.id);
}
if (predU != NULL_NODE)
D->addEdge(nodeInD[u], nodeInD[predU]);
}
//forall(v, listNodes)
for (list<node>::iterator it = listNodes.begin() ; it != listNodes.end() ; it++)
state.set((*it).id, NOT_VISITED);
// creates edges from c-nodes;
map<node, bool> isInD;
//forall(v, listCNodes)
for (list<node>::iterator it = listCNodes.begin(); it != listCNodes.end(); it++) {
node v = *it;
// node u;
BmdListIt<node> bmItn(RBC[v]);
while(bmItn.hasNext())
isInD[bmItn.next()] = false;
list<edge> el;
StableIterator<edge> stableEdgeIt(D->getOutEdges(nodeInD[v]));
while (stableEdgeIt.hasNext()) {
edge e = stableEdgeIt.next();
isInD[nodeInG[D->target(e)]] = true;
el.push_back(e);
}
//D.del_edges(el);
for (list<edge>::iterator edgeIt = el.begin() ; edgeIt != el.end() ; ++edgeIt)
D->delEdge(*edgeIt);
BmdListRevIt<node> itR(RBC[v]);
while (itR.hasNext()) {
node u = itR.next();
if(isInD[u])
D->addEdge(nodeInD[v], nodeInD[u]);
}
}
// orders back-edges by DFS number;
//node_array<int> dfspos(D, 0);
MutableContainer<int> dfsPos;
dfsPos.setAll(0);
posDFS(D, dfsPos);
int tot = D->numberOfNodes();
backEdge.resize(tot + 1); //Warning
backEdge[0] = NULL_EDGE;
for (int i = 1 ; i <= tot ; i++)
backEdge[i] = NULL_EDGE;
//forall(e, listBackEdges)
for (list<edge>::iterator it = listBackEdges.begin() ; it != listBackEdges.end() ; ++it) {
edge e = *it;
node v = sG->source(e);
// cout << v.id << endl;
// cout << "nodeInD[v].id = " << nodeInD.get(v.id).id << endl;
// cout << "dfsPos.get(nodeInD[v].id) = " << dfsPos.get(nodeInD.get(v.id).id) << endl;
backEdge[dfsPos.get(nodeInD[v].id)] = e;
}
delete D;
return tot;
}
/**
* update is_selectable_visited and is_selectable
*/
void Ordering::updateNewSelectableNodes(node node_f, node no_tmp2 ,edge, node node_last, vector<Face> v_faces, bool one_face,bool was_visited, bool selection_face) {
MutableContainer<bool> tried;
tried.setAll(false);
node n = node_f;
node tmp = no_tmp2;
node tmp2 = node() ;
unsigned int lim = v_faces.size();
while(n != node_last) {
tmp2 = n;
if(Gp->deg(n) > 2 && isSelectable(n)) {
if(visitedNodes.get(n.id))
is_selectable_visited.set(n.id,true);
else
is_selectable.set(n.id,true);
}
else {
is_selectable_visited.set(n.id,false);
is_selectable.set(n.id,false);
}
tried.set(n.id,true);
n = tmp;
tmp = right.get(n.id);
}
if(Gp->deg(n) > 2 && isSelectable(n))
is_selectable_visited.set(n.id,true);
else {
is_selectable_visited.set(n.id,false);
is_selectable.set(n.id,false);
}
if(one_face) {
if(tmp2 == node())
tmp2 = node_f;
Iterator<node> * it_no = Gp->getFaceNodes(Gp->getFaceContaining(tmp2,node_last));
while(it_no->hasNext()) {
node no_tmp = it_no->next();
if(!tried.get(no_tmp.id)) {
bool on_c = contour.get(no_tmp.id);
if(on_c) {
bool sel = isSelectable(no_tmp);
if(sel)
if(visitedNodes.get(no_tmp.id))
is_selectable_visited.set(no_tmp.id,true);
else
is_selectable.set(no_tmp.id, true);
else {
is_selectable_visited.set(no_tmp.id,false);
is_selectable_visited.set(no_tmp.id,false);
}
}
tried.set(no_tmp.id,true);
}
}
delete it_no;
lim--;
}
if((selection_face && was_visited) || !selection_face)
for(unsigned int i = 0; i < lim; ++i) {
bool face_sel = false;
Face f_tmp = v_faces[i];
if(is_selectable_face.get(f_tmp.id) || is_selectable_visited_face.get(f_tmp.id))
face_sel = true;
Iterator<node> * itn = Gp->getFaceNodes(f_tmp);
if(face_sel)
while(itn->hasNext()) {
node no_tmp = itn->next();
is_selectable.set(no_tmp.id,false);
is_selectable_visited.set(no_tmp.id,false);
tried.set(no_tmp.id,true);
}
else {
while(itn->hasNext()) {
node no_tmp = itn->next();
if(!tried.get(no_tmp.id) && (is_selectable_visited.get(no_tmp.id) || is_selectable.get(no_tmp.id))) {
if(!isSelectable(no_tmp)) {
is_selectable_visited.set(no_tmp.id,false);
is_selectable.set(no_tmp.id,false);
}
}
tried.set(no_tmp.id,true);
}
}
delete itn;
}
}
static void makeBiconnectedDFS(Graph *graph, vector<edge> &addedEdges) {
// the graph is already connected
// so get any node to begin
node from = graph->getOneNode();
if (!from.isValid())
return;
MutableContainer<int> low;
MutableContainer<int> depth;
depth.setAll(-1);
MutableContainer<node> supergraph;
supergraph.setAll(node());
// dfs loop
stack<dfsBiconnectStruct> dfsLevels;
dfsBiconnectStruct dfsParams(graph, from);
dfsLevels.push(dfsParams);
depth.set(from.id, 0);
low.set(from.id, 0);
while(!dfsLevels.empty()) {
dfsParams = dfsLevels.top();
from = dfsParams.from;
node u = dfsParams.first;
//for every node connected to from
Iterator<node>* itN = dfsParams.inOutNodes;
while (itN->hasNext()) {
node to = itN->next();
//if there is a loop, ignore it
if (from == to) {
continue;
}
if (!u.isValid()) {
dfsLevels.top().first = u = to;
}
//if the destination node has not been visited, visit it
if (depth.get(to.id) == -1) {
supergraph.set(to.id, from);
dfsParams.from = to;
dfsParams.first = node();
dfsParams.u = u;
unsigned int currentDepth = dfsParams.depth + 1;
dfsParams.depth = currentDepth;
depth.set(to.id, currentDepth);
low.set(to.id, currentDepth);
dfsParams.inOutNodes = new StableIterator<node>(graph->getInOutNodes(to));
break;
}
else {
low.set(from.id, std::min(low.get(from.id), depth.get(to.id)));
}
}
if (from != dfsParams.from) {
dfsLevels.push(dfsParams);
continue;
}
delete itN;
// pop the current dfsParams
node to = dfsParams.from;
from = supergraph.get(to.id);
u = dfsParams.u;
if (low.get(to.id) == depth.get(from.id)) {
if (to == u && supergraph.get(from.id).isValid())
addedEdges.push_back(graph->addEdge(to, supergraph.get(from.id)));
if (to != u)
addedEdges.push_back(graph->addEdge(u, to));
}
low.set(from.id, std::min(low.get(from.id), low.get(to.id)));
dfsLevels.pop();
}
}
//**********************************************************************
bool AcyclicTest::acyclicTest(const Graph *graph, vector<edge> *obstructionEdges) {
MutableContainer<bool> visited;
MutableContainer<bool> finished;
visited.setAll(false);
finished.setAll(false);
bool result = true;
// do a dfs traversal
Iterator<node> *it = graph->getNodes();
while (it->hasNext()) {
node curNode = it->next();
if (!visited.get(curNode.id)) {
stack<node> nodesToVisit;
nodesToVisit.push(curNode);
stack<Iterator<edge>*> neighboursToVisit;
neighboursToVisit.push(graph->getOutEdges(curNode));
while(!nodesToVisit.empty()) {
curNode = nodesToVisit.top();
Iterator<edge> *ite = neighboursToVisit.top();
// check if dfs traversal of curNode neighbours is finished
if (!ite->hasNext()) {
// unstack curNode
nodesToVisit.pop();
// delete & unstack neightbours iterator
delete neighboursToVisit.top();
neighboursToVisit.pop();
// mark curNode as to be skipped
// during further exploration
finished.set(curNode.id, true);
}
else {
visited.set(curNode.id, true);
// loop on remaining neighbours
while (ite->hasNext()) {
edge tmp = ite->next();
node neighbour = graph->target(tmp);
// check if we are already in the exploration
// of the neighbours of neighbour
if (visited.get(neighbour.id)) {
if (!finished.get(neighbour.id)) {
// found a cycle
result = false;
if (obstructionEdges != NULL)
obstructionEdges->push_back(tmp);
else {
// it is finished if we don't need
// to collect obstruction edges
break;
}
}
}
else {
// found a new neighbour to explore
// go deeper in our dfs traversal
nodesToVisit.push(neighbour);
neighboursToVisit.push(graph->getOutEdges(neighbour));
break;
}
}
// it may be finished if we don't need
// to collect obstruction edges
if ((!result) && (obstructionEdges == NULL))
break;
}
}
// it may be finished if we don't need
// to collect obstruction edges
if ((!result) && (obstructionEdges == NULL)) {
// don't froget to delete remaining iterators
while(!neighboursToVisit.empty()) {
delete neighboursToVisit.top();
neighboursToVisit.pop();
}
break;
}
}
}
delete it;
return result;
}