void ArrayDataTest::testproperty_UserAttributes()
{
ArrayData array;
ParameterNameValueDefaultRequiredTypeList ¶ms = array.UserAttributes();
ParameterNameValueDefaultRequiredType vparam;
vparam.SetName(L"user-att-name-1");
vparam.SetValueAscii("user-att-value-1");
vparam.SetDefaultValueAscii("user-att-defaultvalue-1");
vparam.RequiredFlag() = false;
vparam.ControlledVocabulary().clear() ;
params.push_back(vparam);
vparam.SetName(L"user-att-name-2");
vparam.SetValueText(L"user-att-value-2");
vparam.SetDefaultValueText(L"user-att-defaultvalue-2");
vparam.RequiredFlag() = true;
vparam.ControlledVocabulary().clear() ;
params.push_back(vparam);
vparam.SetName(L"user-att-name-3");
vparam.SetValueText(L"user-att-value-3");
vparam.SetDefaultValueText(L"user-att-defaultvalue-3");
vparam.RequiredFlag() = false;
vparam.ControlledVocabulary().push_back(L"control1");
vparam.ControlledVocabulary().push_back(L"control2");
params.push_back(vparam);
CPPUNIT_ASSERT( array.UserAttributes().size() == 3 );
ParameterNameValueDefaultRequiredTypeList::iterator it = array.UserAttributes().begin();
CPPUNIT_ASSERT( (*it).GetName() == L"user-att-name-1" );
CPPUNIT_ASSERT( (*it).GetValueAscii() == "user-att-value-1" );
CPPUNIT_ASSERT( (*it).GetDefaultValueAscii() == "user-att-defaultvalue-1" );
CPPUNIT_ASSERT( (*it).ControlledVocabulary().size() == 0 );
CPPUNIT_ASSERT( (*it).RequiredFlag() == false);
++it;
CPPUNIT_ASSERT( (*it).GetName() == L"user-att-name-2" );
CPPUNIT_ASSERT( (*it).GetValueText() == L"user-att-value-2" );
CPPUNIT_ASSERT( (*it).GetDefaultValueText() == L"user-att-defaultvalue-2" );
CPPUNIT_ASSERT( (*it).ControlledVocabulary().size() == 0 );
CPPUNIT_ASSERT( (*it).RequiredFlag() == true);
++it;
CPPUNIT_ASSERT( (*it).GetName() == L"user-att-name-3" );
CPPUNIT_ASSERT( (*it).GetValueText() == L"user-att-value-3" );
CPPUNIT_ASSERT( (*it).GetDefaultValueText() == L"user-att-defaultvalue-3" );
CPPUNIT_ASSERT( (*it).ControlledVocabulary().size() == 2 );
CPPUNIT_ASSERT( (*it).RequiredFlag() == false);
std::list<std::wstring>::iterator controllIt = (*it).ControlledVocabulary().begin();
CPPUNIT_ASSERT( (*controllIt) == L"control1" );
++controllIt;
CPPUNIT_ASSERT( (*controllIt) == L"control2" );
++it;
CPPUNIT_ASSERT (it == array.UserAttributes().end() );
}
void ArrayFileWriterTest::testmethod_WriteFile()
{
ArrayData array1;
array1.CreatedBy() = L"ljevon";
array1.CreatedStep() = affymetrix_calvin_array::ScanningStep;
array1.CreationDateTime() = L"datetime";
array1.ArraySetFileIdentifier() = "id";
array1.InitialProject() = L"proj1";
array1.PhysicalArraysAttributes().resize(1);
array1.PhysicalArraysAttributes()[0].Identifier() = "array1-id";
array1.PhysicalArraysAttributes()[0].ArrayBarcode() = "123";
array1.PhysicalArraysAttributes()[0].ArrayName() = "name";
array1.PhysicalArraysAttributes()[0].Comment() = L"comment goes here";
array1.PhysicalArraysAttributes()[0].CreatedBy() = L"me";
array1.PhysicalArraysAttributes()[0].CreatedStep() = JobOrderServerStep;
array1.PhysicalArraysAttributes()[0].CreationDateTime() = L"now";
array1.PhysicalArraysAttributes()[0].MasterFile() = "master";
array1.PhysicalArraysAttributes()[0].MasterFileId() = "456";
array1.PhysicalArraysAttributes()[0].Media() = PlateOrStripMedia;
array1.PhysicalArraysAttributes()[0].MediaRow() = 1;
array1.PhysicalArraysAttributes()[0].MediaCol() = 2;
array1.PhysicalArraysAttributes()[0].PatAssignment() = AffyBarcodeAssignment;
array1.PhysicalArraysAttributes()[0].MediaFileGUID() = "mediaguid";
array1.PhysicalArraysAttributes()[0].MediaFileName() = "mediafile";
array1.PhysicalArraysAttributes()[0].LibraryPackageName() = "libpackage";
ParameterNameValuePairVector &arrayParams = array1.PhysicalArraysAttributes()[0].Attributes();
ParameterNameValuePair param;
param.Name = L"array-att-name-1";
param.Value = L"array-att-value-1";
arrayParams.push_back(param);
param.Name = L"array-att-name-2";
param.Value = L"array-att-value-2";
arrayParams.push_back(param);
ParameterNameValueDefaultRequiredTypeList &userParams = array1.UserAttributes();
ParameterNameValueDefaultRequiredType vparam;
vparam.SetName(L"user-att-name-1") ;
vparam.SetValueText(L"user-att-value-1");
vparam.RequiredFlag() = false;
vparam.HasDefault() = false;
vparam.ValueType() = ParameterNameValueDefaultRequiredType::TextParameterType;
vparam.ControlledVocabulary().clear() ;
userParams.push_back(vparam);
vparam.SetName(L"user-att-name-2") ;
vparam.SetValueFloat(1.0);
vparam.SetDefaultValueFloat(2.0);
vparam.HasDefault() = true;
vparam.RequiredFlag() = true;
vparam.ValueType() = ParameterNameValueDefaultRequiredType::FloatParameterType;
vparam.ControlledVocabulary().clear() ;
userParams.push_back(vparam);
vparam.SetName(L"user-att-name-3") ;
vparam.ControlMultiValues().push_back(L"one");
vparam.ControlMultiValues().push_back(L"two");
vparam.RequiredFlag() = false;
vparam.HasDefault() = false;
vparam.ValueType() = ParameterNameValueDefaultRequiredType::ControlMultiParameterType;
vparam.ControlledVocabulary().push_back(L"one");
vparam.ControlledVocabulary().push_back(L"two");
vparam.ControlledVocabulary().push_back(L"three");
userParams.push_back(vparam);
// Write the file.
const std::string TEST_FILE = "./test.file.array.xml";
ArrayFileWriter writer;
writer.Write(TEST_FILE, array1);
// Read the file.
ArrayFileReader reader;
ArrayData array2;
array2.Clear();
reader.Read(TEST_FILE, array2);
CPPUNIT_ASSERT(array2.CreatedBy() == L"ljevon");
CPPUNIT_ASSERT(array2.CreatedStep() == affymetrix_calvin_array::ScanningStep);
CPPUNIT_ASSERT(array2.CreationDateTime() == L"datetime");
CPPUNIT_ASSERT(array2.ArraySetFileIdentifier() == "id");
CPPUNIT_ASSERT(array2.InitialProject() == L"proj1");
CPPUNIT_ASSERT( array2.DataTypeIdentifier() == ARRAY_SET_FILE_TYPE_IDENTIFIER );
// Array attributes.
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes().size() == 1 );
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].Identifier() == "array1-id");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].ArrayBarcode() == "123");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].ArrayName() == "name");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].Comment() == L"comment goes here");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].CreatedBy() == L"me");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].CreatedStep() == JobOrderServerStep);
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].CreationDateTime() == L"now");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].MasterFile() == "master");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].MasterFileId() == "456");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].Media() == PlateOrStripMedia);
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].MediaRow() == 1);
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].MediaCol() == 2);
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].PatAssignment() == AffyBarcodeAssignment);
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].MediaFileGUID() == "mediaguid");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].MediaFileName() == "mediafile");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].LibraryPackageName() == "libpackage");
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].Attributes().size() == 2 );
ParameterNameValuePairVector::iterator arrayAttIt = array2.PhysicalArraysAttributes()[0].Attributes().begin();
CPPUNIT_ASSERT( (*arrayAttIt).Name == L"array-att-name-1" );
CPPUNIT_ASSERT( (*arrayAttIt).Value == L"array-att-value-1" );
++arrayAttIt;
CPPUNIT_ASSERT( (*arrayAttIt).Name == L"array-att-name-2" );
CPPUNIT_ASSERT( (*arrayAttIt).Value == L"array-att-value-2" );
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].Attributes()[0].Name == L"array-att-name-1" );
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].Attributes()[0].Value == L"array-att-value-1" );
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].Attributes()[1].Name == L"array-att-name-2" );
CPPUNIT_ASSERT( array2.PhysicalArraysAttributes()[0].Attributes()[1].Value == L"array-att-value-2" );
// User attributes
CPPUNIT_ASSERT( array2.UserAttributes().size() == 3 );
ParameterNameValueDefaultRequiredTypeList::iterator userAttIt = array2.UserAttributes().begin();
CPPUNIT_ASSERT( (*userAttIt).GetName() == L"user-att-name-1" );
CPPUNIT_ASSERT( (*userAttIt).GetValueText() == L"user-att-value-1" );
CPPUNIT_ASSERT( (*userAttIt).RequiredFlag() == false);
CPPUNIT_ASSERT( (*userAttIt).ValueType() == ParameterNameValueDefaultRequiredType::TextParameterType);
CPPUNIT_ASSERT( (*userAttIt).ControlledVocabulary().size() == 0 );
++userAttIt;
CPPUNIT_ASSERT( (*userAttIt).GetName() == L"user-att-name-2" );
CPPUNIT_ASSERT_DOUBLES_EQUAL( (*userAttIt).GetValueFloat(), 1, 0.0001);
CPPUNIT_ASSERT_DOUBLES_EQUAL( (*userAttIt).GetDefaultValueFloat(), 2, 0.0001);
CPPUNIT_ASSERT( (*userAttIt).RequiredFlag() == true);
CPPUNIT_ASSERT( (*userAttIt).ValueType() == ParameterNameValueDefaultRequiredType::FloatParameterType);
CPPUNIT_ASSERT( (*userAttIt).ControlledVocabulary().size() == 0 );
++userAttIt;
CPPUNIT_ASSERT( (*userAttIt).GetName() == L"user-att-name-3" );
CPPUNIT_ASSERT( (*userAttIt).RequiredFlag() == false);
CPPUNIT_ASSERT( (*userAttIt).ValueType() == ParameterNameValueDefaultRequiredType::ControlMultiParameterType);
CPPUNIT_ASSERT( (*userAttIt).ControlMultiValues().size() == 2 );
std::list<std::wstring>::iterator cIt;
cIt = (*userAttIt).ControlMultiValues().begin();
CPPUNIT_ASSERT( (*cIt) == L"one" );
++cIt;
CPPUNIT_ASSERT( (*cIt) == L"two" );
CPPUNIT_ASSERT( (*userAttIt).ControlledVocabulary().size() == 3 );
cIt = (*userAttIt).ControlledVocabulary().begin();
CPPUNIT_ASSERT( (*cIt) == L"one" );
++cIt;
CPPUNIT_ASSERT( (*cIt) == L"two" );
++cIt;
CPPUNIT_ASSERT( (*cIt) == L"three" );
}