Пример #1
0
CachedmzML cacheFile(std::string & tmp_filename, PeakMap& exp)
{
  NEW_TMP_FILE(tmp_filename);

  // Load experiment
  MzMLFile().load(OPENMS_GET_TEST_DATA_PATH("MzMLFile_1.mzML"), exp);
  TEST_EQUAL(exp.getNrSpectra() > 0, true)
  TEST_EQUAL(exp.getNrChromatograms() > 0, true)

  // Cache the experiment to a temporary file
  CachedmzML cache;
  cache.writeMemdump(exp, tmp_filename);
  // Create the index from the given file
  cache.createMemdumpIndex(tmp_filename);
  return cache;
}
Пример #2
0
  delete ptr;
}
END_SECTION

// see also MSDataCachedConsumer_test.cpp -> consumeSpectrum
// this is a complete test of the caching object
START_SECTION(( [EXTRA] testCaching))
{
  std::string tmp_filename;
  NEW_TMP_FILE(tmp_filename);

  // Load experiment
  PeakMap exp;
  MzMLFile().load(OPENMS_GET_TEST_DATA_PATH("MzMLFile_1.mzML"), exp);
  TEST_EQUAL(exp.getNrSpectra() > 0, true)
  TEST_EQUAL(exp.getNrChromatograms() > 0, true)

  // Cache the experiment to a temporary file
  CachedmzML cache;
  cache.writeMemdump(exp, tmp_filename);

  // Check whether spectra were written to disk correctly...
  {
    // Create the index from the given file
    cache.createMemdumpIndex(tmp_filename);
    std::vector<std::streampos> spectra_index = cache.getSpectraIndex();
    TEST_EQUAL(spectra_index.size(), 4)
    std::ifstream ifs_(tmp_filename.c_str(), std::ios::binary);

    // retrieve the spectrum
    OpenSwath::BinaryDataArrayPtr mz_array(new OpenSwath::BinaryDataArray);