void main()
{
TFIM test1[5];
Regulation test;
test.readName(test1);
int a=test.getGeneAmount();
cout<<"gene amount:"<<a<<endl;
int i;
for(i=0;i<5*5;i++)
{
cout<<"regulation:"<<test.originalMatrix<<endl;
test.originalMatrix=test.originalMatrix+1;
}
getchar();
}
int main()
{
TFIM test[N];
Regulation Hope;
Hope.readName(test);
Hope.fullFill();
cout<<Hope.getGeneAmount()<<endl;
cout<<Hope.originalMatrix[11][11]<<endl;
FILE *fp;
fp=fopen("sequence","w");
for(int i=0;i<Hope.getGeneAmount();i++)
{
test[i].getGeneInformation(fp);
cout<<i<<endl;
//cout<<test[i].getGeneSequence()<<endl;
}
fclose(fp);
//rewind(fp);
//cout<<i<<endl;
//cout<<test[164].getGeneName()<<endl;
//cout<<test[164].getLeftPosition()<<endl;
//cout<<test[164].getRightPosition()<<endl;
//cout<<test[164].getGeneSequence()<<endl;
/*EasytoDebug test1[200];
test1[100].fetch();
cout<<test1[100].getLength()<<endl;
cout<<test1[100].getNumber()<<endl;
cout<<test1[100].getSequence()<<endl;*/
//EasytoDebug read[100];
//fp=fopen("Sequence","r");
/*for(int j=0;j<1;j++)
{
read[j].fetch(fp);
//cout<<read[j].getNumber()<<endl;
//cout<<read[j].getSequence()<<endl;
}*/
getchar();
}
int main()
{
TFIM test[N];
Regulation Hope;
Hope.readName(test);
Hope.fullFill();
//Calculate xinyu;
//xinyu.Network_1(Hope.originalMatrix,166);
//xinyu.Network_2(Hope.originalMatrix,166);
//cout<<xinyu.nong[90];
int A,C;
string B;
FILE *fp;
//FILE *fp1;
//fp=fopen("DNA","w");
/*for(int i=160;i<Hope.getGeneAmount();i++)
{
test[i].getGeneInformation(fp);
cout<<i<<endl;
//cout<<test[i].getGeneSequence()<<endl;
}
fclose(fp);*/
//ReadDNA read[100];
ReadDNA luck[N];
Sequence good[N];
fp=fopen("DNA","r");
//fp1=fopen("AAS","w");
//ofstream data("AAS");
for(int i=0;i<Hope.getGeneAmount();i++)
{
//test[i].getGeneInformation(fp);
luck[i].fetch(fp);
A=luck[i].getNumber();
B=luck[i].getSequence();
C=luck[i].getLength();
//B=test[i].getGeneSequence();
//C=B.length();
good[i].initializeGeneSequence(B,A,C);
good[i].translation();
B=good[i].aminoAcidSequence;
//cout<<A<<" "<<B<<endl;
}
fclose(fp);
//data.close();
ofstream RN("newGRN");
string insertGene="MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFAYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSVLSKDPNEKRDHMVLLEFVTAAGITHGMDELYK";
GRN newGRN;
newGRN.initializeGRN(Hope.originalMatrix,Hope.getGeneAmount());
good[166].getNewASS(insertGene);
newGRN.constructNewGRN(good);
for(int j=0;j<N;j++)
{
for(int i=0;i<N;i++)
{
RN<<newGRN.newGRNCorrelation[j][i]<<" ";
}
RN<<endl;
}
//test[30].getGeneInformation();
//test[31].getGeneInformation();
//int a;
//a=test[31].getRNA();
//a=test[30].getRNA();
getchar();
}
