TEST_F(FileIOIntegrationTest, ReadSNPInfo) {
EXPECT_CALL(configMock, excludeSNPsWithNegativePosition()).Times(AtLeast(1)).WillRepeatedly(Return(true));
EXPECT_CALL(configMock, getPhenotypeCoding()).Times(1).WillRepeatedly(Return(ZERO_ONE_CODING));
DataFilesReaderFactory dataFilesReaderFactory;
DataFilesReader* dataFilesReader = dataFilesReaderFactory.constructDataFilesReader(configMock);
std::vector<SNP*>* snpInformation = dataFilesReader->readSNPInformation();
int numSNPToInclude = 0;
int snpSize = snpInformation->size();
for(int i = 0; i < snpSize; ++i){
SNP* snp = (*snpInformation)[i];
if(snp->shouldInclude()){
++numSNPToInclude;
}
}
EXPECT_EQ(10, snpSize);
EXPECT_EQ(8, numSNPToInclude);
delete dataFilesReader;
for(int i = 0; i < snpSize; ++i){
delete (*snpInformation)[i];
}
delete snpInformation;
}
