virtual void read(const std::string& filename, const std::string& head, TraData& result, int documentIndex = 0) const
{
if (documentIndex != 0)
throw ReaderFail("[Reader_traML::read] multiple documents not supported");
shared_ptr<istream> is(new pwiz::util::random_access_compressed_ifstream(filename.c_str()));
if (!is.get() || !*is)
throw runtime_error(("[Reader_traML::read] Unable to open file " + filename).c_str());
switch (type(*is))
{
case Type_traML:
{
Serializer_traML serializer;
serializer.read(is, result);
break;
}
case Type_Unknown:
default:
{
throw runtime_error("[Reader_traML::read] This isn't happening.");
}
}
fillInCommonMetadata(filename, result);
}
void testWriteRead()
{
if (os_) *os_ << "testWriteRead()" << endl;
TraData td;
examples::initializeTiny(td);
Serializer_traML tramlSerializer;
ostringstream oss;
tramlSerializer.write(oss, td);
if (os_) *os_ << "oss:\n" << oss.str() << endl;
shared_ptr<istringstream> iss(new istringstream(oss.str()));
TraData td2;
tramlSerializer.read(iss, td2);
Diff<TraData, DiffConfig> diff(td, td2);
if (os_ && diff) *os_ << diff << endl;
unit_assert(!diff);
}
