void PHG4SvtxClusterizer::PrintClusters(PHCompositeNode *topNode) {
if (verbosity >= 1) {
SvtxClusterMap *clusterlist = findNode::getClass<SvtxClusterMap>(topNode,"SvtxClusterMap");
if (!clusterlist) return;
cout << "================= PHG4SvtxClusterizer::process_event() ====================" << endl;
cout << " Found and recorded the following " << clusterlist->size() << " clusters: " << endl;
unsigned int icluster = 0;
for (SvtxClusterMap::Iter iter = clusterlist->begin();
iter != clusterlist->end();
++iter) {
SvtxCluster* cluster = &iter->second;
cout << icluster << " of " << clusterlist->size() << endl;
cluster->identify();
++icluster;
}
cout << "===========================================================================" << endl;
}
return;
}
void SvtxEvaluator::printOutputInfo(PHCompositeNode *topNode) {
if (verbosity > 1) cout << "SvtxEvaluator::printOutputInfo() entered" << endl;
//==========================================
// print out some useful stuff for debugging
//==========================================
if (verbosity > 0) {
SvtxTrackEval* trackeval = _svtxevalstack->get_track_eval();
SvtxClusterEval* clustereval = _svtxevalstack->get_cluster_eval();
SvtxTruthEval* trutheval = _svtxevalstack->get_truth_eval();
// event information
cout << endl;
cout << PHWHERE << " NEW OUTPUT FOR EVENT " << _ievent << endl;
cout << endl;
PHG4TruthInfoContainer* truthinfo = findNode::getClass<PHG4TruthInfoContainer>(topNode,"G4TruthInfo");
PHG4VtxPoint *gvertex = truthinfo->GetPrimaryVtx( truthinfo->GetPrimaryVertexIndex() );
float gvx = gvertex->get_x();
float gvy = gvertex->get_y();
float gvz = gvertex->get_z();
float vx = NAN;
float vy = NAN;
float vz = NAN;
SvtxVertexMap* vertexmap = findNode::getClass<SvtxVertexMap>(topNode,"SvtxVertexMap");
if (vertexmap) {
if (!vertexmap->empty()) {
SvtxVertex* vertex = (vertexmap->begin()->second);
vx = vertex->get_x();
vy = vertex->get_y();
vz = vertex->get_z();
}
}
cout << "===Vertex Reconstruction=======================" << endl;
cout << "vtrue = (" << gvx << "," << gvy << "," << gvz << ") => vreco = (" << vx << "," << vy << "," << vz << ")" << endl;
cout << endl;
cout << "===Tracking Summary============================" << endl;
unsigned int ng4hits[100] = {0};
std::set<PHG4Hit*> g4hits = trutheval->all_truth_hits();
for (std::set<PHG4Hit*>::iterator iter = g4hits.begin();
iter != g4hits.end();
++iter) {
PHG4Hit *g4hit = *iter;
++ng4hits[g4hit->get_layer()];
}
SvtxHitMap* hitmap = findNode::getClass<SvtxHitMap>(topNode,"SvtxHitMap");
unsigned int nhits[100] = {0};
if (hitmap) {
for (SvtxHitMap::Iter iter = hitmap->begin();
iter != hitmap->end();
++iter) {
SvtxHit* hit = iter->second;
++nhits[hit->get_layer()];
}
}
SvtxClusterMap* clustermap = findNode::getClass<SvtxClusterMap>(topNode,"SvtxClusterMap");
unsigned int nclusters[100] = {0};
if (clustermap) {
for (SvtxClusterMap::Iter iter = clustermap->begin();
iter != clustermap->end();
++iter) {
SvtxCluster* cluster = iter->second;
++nclusters[cluster->get_layer()];
}
}
for (unsigned int ilayer = 0; ilayer < 100; ++ilayer) {
cout << "layer " << ilayer << ": nG4hits = " << ng4hits[ilayer]
<< " => nHits = " << nhits[ilayer]
<< " => nClusters = " << nclusters[ilayer] << endl;
}
SvtxTrackMap* trackmap = findNode::getClass<SvtxTrackMap>(topNode,"SvtxTrackMap");
cout << "nGtracks = " << std::distance(truthinfo->GetPrimaryParticleRange().first,
truthinfo->GetPrimaryParticleRange().second);
cout << " => nTracks = ";
if (trackmap) cout << trackmap->size() << endl;
else cout << 0 << endl;
// cluster wise information
if (verbosity > 1) {
for(std::set<PHG4Hit*>::iterator iter = g4hits.begin();
iter != g4hits.end();
++iter) {
PHG4Hit *g4hit = *iter;
cout << endl;
cout << "===PHG4Hit===================================" << endl;
cout << " PHG4Hit: "; g4hit->identify();
std::set<SvtxCluster*> clusters = clustereval->all_clusters_from(g4hit);
for (std::set<SvtxCluster*>::iterator jter = clusters.begin();
jter != clusters.end();
++jter) {
SvtxCluster *cluster = *jter;
cout << "===Created-SvtxCluster================" << endl;
cout << "SvtxCluster: "; cluster->identify();
}
}
PHG4TruthInfoContainer::ConstRange range = truthinfo->GetPrimaryParticleRange();
for (PHG4TruthInfoContainer::ConstIterator iter = range.first;
iter != range.second;
++iter) {
PHG4Particle *particle = iter->second;
// track-wise information
cout << endl;
cout << "=== Gtrack ===================================================" << endl;
cout << " PHG4Particle id = " << particle->get_track_id() << endl;
particle->identify();
cout << " ptrue = (";
cout.width(5); cout << particle->get_px();
cout << ",";
cout.width(5); cout << particle->get_py();
cout << ",";
cout.width(5); cout << particle->get_pz();
cout << ")" << endl;
cout << " vtrue = (";
cout.width(5); cout << truthinfo->GetVtx(particle->get_vtx_id())->get_x();
cout << ",";
cout.width(5); cout << truthinfo->GetVtx(particle->get_vtx_id())->get_y();
cout << ",";
cout.width(5); cout << truthinfo->GetVtx(particle->get_vtx_id())->get_z();
cout << ")" << endl;
cout << " pt = " << sqrt(pow(particle->get_px(),2)+pow(particle->get_py(),2)) << endl;
cout << " phi = " << atan2(particle->get_py(),particle->get_px()) << endl;
cout << " eta = " << asinh(particle->get_pz()/sqrt(pow(particle->get_px(),2)+pow(particle->get_py(),2))) << endl;
cout << " embed flag = " << truthinfo->isEmbeded(particle->get_track_id()) << endl;
cout << " ---Associated-PHG4Hits-----------------------------------------" << endl;
std::set<PHG4Hit*> g4hits = trutheval->all_truth_hits(particle);
for(std::set<PHG4Hit*>::iterator jter = g4hits.begin();
jter != g4hits.end();
++jter) {
PHG4Hit *g4hit = *jter;
float x = 0.5*(g4hit->get_x(0)+g4hit->get_x(1));
float y = 0.5*(g4hit->get_y(0)+g4hit->get_y(1));
float z = 0.5*(g4hit->get_z(0)+g4hit->get_z(1));
cout << " #" << g4hit->get_hit_id() << " xtrue = (";
cout.width(5); cout << x;
cout << ",";
cout.width(5); cout << y;
cout << ",";
cout.width(5); cout << z;
cout << ")";
std::set<SvtxCluster*> clusters = clustereval->all_clusters_from(g4hit);
for (std::set<SvtxCluster*>::iterator kter = clusters.begin();
kter != clusters.end();
++kter) {
SvtxCluster *cluster = *kter;
float x = cluster->get_x();
float y = cluster->get_y();
float z = cluster->get_z();
cout << " => #" << cluster->get_id();
cout << " xreco = (";
cout.width(5); cout << x;
cout << ",";
cout.width(5); cout << y;
cout << ",";
cout.width(5); cout << z;
cout << ")";
}
cout << endl;
}
if (trackmap&&clustermap) {
std::set<SvtxTrack*> tracks = trackeval->all_tracks_from(particle);
for (std::set<SvtxTrack*>::iterator jter = tracks.begin();
jter != tracks.end();
++jter) {
SvtxTrack *track = *jter;
float px = track->get_px();
float py = track->get_py();
float pz = track->get_pz();
cout << "===Created-SvtxTrack==========================================" << endl;
cout << " SvtxTrack id = " << track->get_id() << endl;
cout << " preco = (";
cout.width(5); cout << px;
cout << ",";
cout.width(5); cout << py;
cout << ",";
cout.width(5); cout << pz;
cout << ")" << endl;
cout << " quality = " << track->get_quality() << endl;
cout << " nfromtruth = " << trackeval->get_nclusters_contribution(track,particle) << endl;
cout << " ---Associated-SvtxClusters-to-PHG4Hits-------------------------" << endl;
for (SvtxTrack::ConstClusterIter iter = track->begin_clusters();
iter != track->end_clusters();
++iter) {
unsigned int cluster_id = *iter;
SvtxCluster* cluster = clustermap->get(cluster_id);
float x = cluster->get_x();
float y = cluster->get_y();
float z = cluster->get_z();
cout << " #" << cluster->get_id() << " xreco = (";
cout.width(5); cout << x;
cout << ",";
cout.width(5); cout << y;
cout << ",";
cout.width(5); cout << z;
cout << ") =>";
PHG4Hit* g4hit = clustereval->max_truth_hit_by_energy(cluster);
if ((g4hit) && (g4hit->get_trkid() == particle->get_track_id())) {
x = 0.5*(g4hit->get_x(0)+g4hit->get_x(1));
y = 0.5*(g4hit->get_y(0)+g4hit->get_y(1));
z = 0.5*(g4hit->get_z(0)+g4hit->get_z(1));
cout << " #" << g4hit->get_hit_id()
<< " xtrue = (";
cout.width(5); cout << x;
cout << ",";
cout.width(5); cout << y;
cout << ",";
cout.width(5); cout << z;
cout << ") => Gtrack id = " << g4hit->get_trkid();
} else {
cout << " noise hit";
}
}
cout << endl;
}
}
}
}
cout << endl;
} // if verbosity
return;
}
void SvtxEvaluator::printInputInfo(PHCompositeNode *topNode) {
if (verbosity > 1) cout << "SvtxEvaluator::printInputInfo() entered" << endl;
if (verbosity > 3) {
// event information
cout << endl;
cout << PHWHERE << " INPUT FOR EVENT " << _ievent << endl;
cout << endl;
cout << "---PHG4HITS-------------" << endl;
_svtxevalstack->get_truth_eval()->set_strict(_strict);
std::set<PHG4Hit*> g4hits = _svtxevalstack->get_truth_eval()->all_truth_hits();
unsigned int ig4hit = 0;
for(std::set<PHG4Hit*>::iterator iter = g4hits.begin();
iter != g4hits.end();
++iter) {
PHG4Hit *g4hit = *iter;
cout << ig4hit << " of " << g4hits.size();
cout << ": PHG4Hit: " << endl;
g4hit->identify();
++ig4hit;
}
cout << "---SVTXCLUSTERS-------------" << endl;
SvtxClusterMap* clustermap = findNode::getClass<SvtxClusterMap>(topNode,"SvtxClusterMap");
if (clustermap) {
unsigned int icluster = 0;
for (SvtxClusterMap::Iter iter = clustermap->begin();
iter != clustermap->end();
++iter) {
SvtxCluster* cluster = iter->second;
cout << icluster << " of " << clustermap->size();
cout << ": SvtxCluster: " << endl;
cluster->identify();
++icluster;
}
}
cout << "---SVXTRACKS-------------" << endl;
SvtxTrackMap* trackmap = findNode::getClass<SvtxTrackMap>(topNode,"SvtxTrackMap");
if (trackmap) {
unsigned int itrack = 0;
for (SvtxTrackMap::Iter iter = trackmap->begin();
iter != trackmap->end();
++iter) {
cout << itrack << " of " << trackmap->size();
SvtxTrack *track = iter->second;
cout << " : SvtxTrack:" << endl;
track->identify();
cout << endl;
}
}
cout << "---SVXVERTEXES-------------" << endl;
SvtxVertexMap* vertexmap = findNode::getClass<SvtxVertexMap>(topNode,"SvtxVertexMap");
if (vertexmap) {
unsigned int ivertex = 0;
for (SvtxVertexMap::Iter iter = vertexmap->begin();
iter != vertexmap->end();
++iter) {
cout << ivertex << " of " << vertexmap->size();
SvtxVertex *vertex = iter->second;
cout << " : SvtxVertex:" << endl;
vertex->identify();
cout << endl;
}
}
}
return;
}
void PHG4SvtxClusterizer::ClusterLadderCells(PHCompositeNode *topNode) {
//----------
// Get Nodes
//----------
// get the SVX geometry object
PHG4CylinderGeomContainer* geom_container = findNode::getClass<PHG4CylinderGeomContainer>(topNode,"CYLINDERGEOM_SILICON_TRACKER");
if (!geom_container) return;
PHG4HitContainer* g4hits = findNode::getClass<PHG4HitContainer>(topNode,"G4HIT_SILICON_TRACKER");
if (!g4hits) return;
PHG4CylinderCellContainer* cells = findNode::getClass<PHG4CylinderCellContainer>(topNode,"G4CELL_SILICON_TRACKER");
if (!cells) return;
//-----------
// Clustering
//-----------
// sort hits layer by layer
std::multimap<int,SvtxHit*> layer_hits_mmap;
for (SvtxHitMap::Iter iter = _hits->begin();
iter != _hits->end();
++iter) {
SvtxHit* hit = &iter->second;
layer_hits_mmap.insert(make_pair(hit->get_layer(),hit));
}
PHG4CylinderGeomContainer::ConstRange layerrange = geom_container->get_begin_end();
for(PHG4CylinderGeomContainer::ConstIterator layeriter = layerrange.first;
layeriter != layerrange.second;
++layeriter) {
int layer = layeriter->second->get_layer();
std::map<PHG4CylinderCell*,SvtxHit*> cell_hit_map;
vector<PHG4CylinderCell*> cell_list;
for (std::multimap<int,SvtxHit*>::iterator hiter = layer_hits_mmap.lower_bound(layer);
hiter != layer_hits_mmap.upper_bound(layer);
++hiter) {
SvtxHit* hit = hiter->second;
PHG4CylinderCell* cell = cells->findCylinderCell(hit->get_cellid());
cell_list.push_back(cell);
cell_hit_map.insert(make_pair(cell,hit));
}
if (cell_list.size() == 0) continue; // if no cells, go to the next layer
// i'm not sure this sorting is ever really used
sort(cell_list.begin(), cell_list.end(), PHG4SvtxClusterizer::ladder_lessthan);
typedef adjacency_list <vecS, vecS, undirectedS> Graph;
typedef graph_traits<Graph>::vertex_descriptor Vertex;
Graph G;
for(unsigned int i=0; i<cell_list.size(); i++) {
for(unsigned int j=i+1; j<cell_list.size(); j++) {
if(ladder_are_adjacent(cell_list[i], cell_list[j]) )
add_edge(i,j,G);
}
add_edge(i,i,G);
}
// Find the connections between the vertices of the graph (vertices are the rawhits,
// connections are made when they are adjacent to one another)
vector<int> component(num_vertices(G));
// this is the actual clustering, performed by boost
connected_components(G, &component[0]);
// Loop over the components(hit cells) compiling a list of the
// unique connected groups (ie. clusters).
set<int> cluster_ids; // unique components
multimap<int, PHG4CylinderCell*> clusters;
for (unsigned int i=0; i<component.size(); i++) {
cluster_ids.insert( component[i] );
clusters.insert( make_pair(component[i], cell_list[i]) );
}
//
for (set<int>::iterator clusiter = cluster_ids.begin();
clusiter != cluster_ids.end();
clusiter++ ) {
int clusid = *clusiter;
pair<multimap<int, PHG4CylinderCell*>::iterator,
multimap<int, PHG4CylinderCell*>::iterator> clusrange = clusters.equal_range(clusid);
multimap<int, PHG4CylinderCell*>::iterator mapiter = clusrange.first;
int layer = mapiter->second->get_layer();
PHG4CylinderGeom* geom = geom_container->GetLayerGeom(layer);
SvtxCluster clus;
clus.set_layer( layer );
float clus_energy = 0.0;
unsigned int clus_adc = 0;
// determine the size of the cluster in phi and z
// useful for track fitting the cluster
set<int> phibins;
set<int> zbins;
for (mapiter = clusrange.first; mapiter != clusrange.second; mapiter++ ) {
PHG4CylinderCell* cell = mapiter->second;
phibins.insert(cell->get_binphi());
zbins.insert(cell->get_binz());
}
float thickness = geom->get_thickness();
float pitch = geom->get_strip_y_spacing();
float length = geom->get_strip_z_spacing();
float phisize = phibins.size()*pitch;
float zsize = zbins.size()*length;
float tilt = geom->get_strip_tilt();
// determine the cluster position...
double xsum = 0.0;
double ysum = 0.0;
double zsum = 0.0;
unsigned nhits = 0;
int ladder_z_index = -1;
int ladder_phi_index = -1;
for(mapiter = clusrange.first; mapiter != clusrange.second; mapiter++ ) {
PHG4CylinderCell* cell = mapiter->second;
SvtxHit* hit = cell_hit_map[cell];
clus.insert_hit(hit->get_id());
clus_energy += hit->get_e();
clus_adc += hit->get_adc();
double hit_location[3] = {0.0,0.0,0.0};
geom->find_strip_center(cell->get_ladder_z_index(),
cell->get_ladder_phi_index(),
cell->get_binz(),
cell->get_binphi(),
hit_location);
ladder_z_index = cell->get_ladder_z_index();
ladder_phi_index = cell->get_ladder_phi_index();
if (_make_e_weights[layer]) {
xsum += hit_location[0] * hit->get_adc();
ysum += hit_location[1] * hit->get_adc();
zsum += hit_location[2] * hit->get_adc();
} else {
xsum += hit_location[0];
ysum += hit_location[1];
zsum += hit_location[2];
}
++nhits;
}
double clusx = NAN;
double clusy = NAN;
double clusz = NAN;
if (_make_e_weights[layer]) {
clusx = xsum / clus_adc;
clusy = ysum / clus_adc;
clusz = zsum / clus_adc;
} else {
clusx = xsum / nhits;
clusy = ysum / nhits;
clusz = zsum / nhits;
}
double ladder_location[3] = {0.0,0.0,0.0};
geom->find_segment_center(ladder_z_index,
ladder_phi_index,
ladder_location);
double ladderphi = atan2( ladder_location[1], ladder_location[0] );
clus.set_position(0, clusx);
clus.set_position(1, clusy);
clus.set_position(2, clusz);
clus.set_e(clus_energy);
clus.set_adc(clus_adc);
float invsqrt12 = 1.0/sqrt(12.0);
TMatrixF DIM(3,3);
DIM[0][0] = pow(0.5*thickness,2);
DIM[0][1] = 0.0;
DIM[0][2] = 0.0;
DIM[1][0] = 0.0;
DIM[1][1] = pow(0.5*phisize,2);
DIM[1][2] = 0.0;
DIM[2][0] = 0.0;
DIM[2][1] = 0.0;
DIM[2][2] = pow(0.5*zsize,2);
TMatrixF ERR(3,3);
ERR[0][0] = pow(0.5*thickness*invsqrt12,2);
ERR[0][1] = 0.0;
ERR[0][2] = 0.0;
ERR[1][0] = 0.0;
ERR[1][1] = pow(0.5*phisize*invsqrt12,2);
ERR[1][2] = 0.0;
ERR[2][0] = 0.0;
ERR[2][1] = 0.0;
ERR[2][2] = pow(0.5*zsize*invsqrt12,2);
TMatrixF ROT(3,3);
ROT[0][0] = cos(ladderphi);
ROT[0][1] = -1.0*sin(ladderphi);
ROT[0][2] = 0.0;
ROT[1][0] = sin(ladderphi);
ROT[1][1] = cos(ladderphi);
ROT[1][2] = 0.0;
ROT[2][0] = 0.0;
ROT[2][1] = 0.0;
ROT[2][2] = 1.0;
TMatrixF TILT(3,3);
TILT[0][0] = 1.0;
TILT[0][1] = 0.0;
TILT[0][2] = 0.0;
TILT[1][0] = 0.0;
TILT[1][1] = cos(tilt);
TILT[1][2] = -1.0*sin(tilt);
TILT[2][0] = 0.0;
TILT[2][1] = sin(tilt);
TILT[2][2] = cos(tilt);
TMatrixF R(3,3);
R = ROT * TILT;
TMatrixF R_T(3,3);
R_T.Transpose(R);
TMatrixF COVAR_DIM(3,3);
COVAR_DIM = R * DIM * R_T;
clus.set_size( 0 , 0 , COVAR_DIM[0][0] );
clus.set_size( 0 , 1 , COVAR_DIM[0][1] );
clus.set_size( 0 , 2 , COVAR_DIM[0][2] );
clus.set_size( 1 , 0 , COVAR_DIM[1][0] );
clus.set_size( 1 , 1 , COVAR_DIM[1][1] );
clus.set_size( 1 , 2 , COVAR_DIM[1][2] );
clus.set_size( 2 , 0 , COVAR_DIM[2][0] );
clus.set_size( 2 , 1 , COVAR_DIM[2][1] );
clus.set_size( 2 , 2 , COVAR_DIM[2][2] );
TMatrixF COVAR_ERR(3,3);
COVAR_ERR = R * ERR * R_T;
clus.set_error( 0 , 0 , COVAR_ERR[0][0] );
clus.set_error( 0 , 1 , COVAR_ERR[0][1] );
clus.set_error( 0 , 2 , COVAR_ERR[0][2] );
clus.set_error( 1 , 0 , COVAR_ERR[1][0] );
clus.set_error( 1 , 1 , COVAR_ERR[1][1] );
clus.set_error( 1 , 2 , COVAR_ERR[1][2] );
clus.set_error( 2 , 0 , COVAR_ERR[2][0] );
clus.set_error( 2 , 1 , COVAR_ERR[2][1] );
clus.set_error( 2 , 2 , COVAR_ERR[2][2] );
if (clus_energy > get_threshold_by_layer(layer)) {
SvtxCluster* ptr = _clusterlist->insert(clus);
if (!ptr->IsValid()) {
static bool first = true;
if (first) {
cout << PHWHERE << "ERROR: Invalid SvtxClusters are being produced" << endl;
ptr->identify();
first = false;
}
}
if (verbosity>1) {
double radius = sqrt(clusx*clusx+clusy*clusy);
double clusphi = atan2(clusy,clusx);
cout << "r=" << radius << " phi=" << clusphi << " z=" << clusz << endl;
cout << "pos=(" << clus.get_position(0) << ", " << clus.get_position(1)
<< ", " << clus.get_position(2) << ")" << endl;
cout << endl;
}
} else if (verbosity>1) {
double radius = sqrt(clusx*clusx+clusy*clusy);
double clusphi = atan2(clusy,clusx);
cout << "removed r=" << radius << " phi=" << clusphi << " z=" << clusz << endl;
cout << "pos=(" << clus.get_position(0) << ", " << clus.get_position(1)
<< ", " << clus.get_position(2) << ")" << endl;
cout << endl;
}
}
}
return;
}
