UncertMLNode *
UncertMLNode::createDistributionNode(std::string name,
std::string arguments, std::string argumentIds)
{
UncertMLNode *node = new UncertMLNode();
node->setElementName(name);
XMLAttributes attr = XMLAttributes();
/* really the url should be specific to the distribtuion
* but whilst the attribue is required in uncertML it does not require
* it to be an exact match
*/
attr.add("definition", "http://www.uncertml.org/distributions");
node->setAttributes(attr);
/* create an idlist from the arguments
* and check we have the same number of args and ids
*/
IdList args = IdList(arguments);
IdList argIds = IdList(argumentIds);
unsigned int numArgs = args.size();
unsigned int numIds = argIds.size();
if (numArgs != numIds)
{
return NULL;
}
for (unsigned int i = 0; i < numArgs; i++)
{
UncertMLNode * varChild = new UncertMLNode();
varChild->setElementName("var");
XMLAttributes attributes = XMLAttributes();
attributes.add("varId", argIds.at(i));
varChild->setAttributes(attributes);
UncertMLNode * child = new UncertMLNode();
child->setElementName(args.at(i));
child->addChild(varChild);
node->addChild(child);
}
return node;
}
bool
UncertMLNode::parseXMLNode(const XMLNode* xml)
{
// if we have an UncertML element then we want the
// child
if (xml->getName() == "UncertML")
{
xml = &(xml->getChild(0));
}
bool success = true;
// set the element name
if (setElementName(xml->getName()) != LIBSBML_OPERATION_SUCCESS)
{
success = false;
}
// set any attributes from teh element
if (xml->getAttributesLength() > 0 && success != false)
{
if (setAttributes(xml->getAttributes()) != LIBSBML_OPERATION_SUCCESS)
{
success = false;
}
}
// loop thru the children of the XMLNode
// parse each and add as a child
for (unsigned int i = 0; success != false && i < xml->getNumChildren(); i++)
{
UncertMLNode * child = new UncertMLNode();
success = child->parseXMLNode(&(xml->getChild(i)));
if (success == true)
{
if (addChild(child) != LIBSBML_OPERATION_SUCCESS)
{
success = false;
}
}
}
return success;
}
/*
* Copy constructor for UncertMLNode.
*/
UncertMLNode::UncertMLNode (const UncertMLNode& orig)
{
if (&orig == NULL)
{
throw SBMLConstructorException("Null argument to copy constructor");
}
else
{
mElementName = orig.mElementName;
mAttributes = orig.mAttributes;
mChildren = new List();
for (unsigned int c = 0; c < orig.getNumChildren(); ++c)
{
addChild( orig.getChild(c)->clone() );
}
}
}
END_TEST
START_TEST (test_uncertml_children)
{
fail_unless ( node->getNumChildren() == 0 );
node->setElementName("parent");
UncertMLNode * child = new UncertMLNode();
child->setElementName("child");
int i = node->addChild(child);
fail_unless ( i == LIBSBML_OPERATION_SUCCESS );
fail_unless ( node->getNumChildren() == 1 );
const UncertMLNode * retrieved = node->getChild(0);
fail_unless ( retrieved != NULL );
fail_unless ( retrieved->getElementName() == "child" );
delete child;
}