C++ (Cpp) UnitDefinition::getId примеры использования

Пример #1

Файл: TestDerivedUnitDefinitions.cpp Проект: 0u812/roadrunner-backup

END_TEST

START_TEST (test_DerivedUnitDefinition_parameter)
{
  UnitDefinition *fud = m->getParameter(0)->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 2);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  fail_unless(fud->getUnit(1)->getMultiplier() == 1);
  fail_unless(fud->getUnit(1)->getScale() == 0);
  fail_unless(fud->getUnit(1)->getExponent() == -1);
  fail_unless(fud->getUnit(1)->getOffset() == 0.0);
  fail_unless(fud->getUnit(1)->getKind() == UNIT_KIND_SECOND);

  fud = m->getParameter(1)->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 0);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

}

Пример #2

Файл: TestUnitFormulaFormatter1.cpp Проект: mgaldzic/copasi_api

END_TEST

START_TEST (test_UnitFormulaFormatter1_getUnitDefinition_function)
{
    UnitDefinition * ud;

    /* function applied to numbers only */
    ud = uff->getUnitDefinition(m->getRule(0)->getMath());

    fail_unless(ud->getNumUnits() == 0);

    fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);


    /* function applied to components */
    uff->resetFlags();
    ud = uff->getUnitDefinition(m->getRule(1)->getMath());

    fail_unless(ud->getNumUnits() == 1);

    fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

    fail_unless(ud->getUnit(0)->getMultiplier() == 1);
    fail_unless(ud->getUnit(0)->getScale() == 0);
    fail_unless(ud->getUnit(0)->getExponent() == 1);
    fail_unless(ud->getUnit(0)->getOffset() == 0.0);
    fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_METRE);

    /* function with two arguments but only one bvar */
    uff->resetFlags();
    ud = uff->getUnitDefinition(m->getRule(2)->getMath());

    fail_unless(ud->getNumUnits() == 1);

    fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

    fail_unless(ud->getUnit(0)->getMultiplier() == 1);
    fail_unless(ud->getUnit(0)->getScale() == 0);
    fail_unless(ud->getUnit(0)->getExponent() == 3);
    fail_unless(ud->getUnit(0)->getOffset() == 0.0);
    fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_METRE);

    /* function with two arguments but only one bvar */
    uff->resetFlags();
    ud = uff->getUnitDefinition(m->getRule(3)->getMath());

    fail_unless(ud->getNumUnits() == 1);

    fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

    fail_unless(ud->getUnit(0)->getMultiplier() == 1);
    fail_unless(ud->getUnit(0)->getScale() == 0);
    fail_unless(ud->getUnit(0)->getExponent() == -1);
    fail_unless(ud->getUnit(0)->getOffset() == 0.0);
    fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_SECOND);

    delete ud;

}

Пример #3

Файл: TestDerivedUnitDefinitions.cpp Проект: 0u812/roadrunner-backup

END_TEST

START_TEST (test_DerivedUnitDefinition_species)
{
  UnitDefinition *fud = m->getSpecies(0)->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 2);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  fail_unless(fud->getUnit(1)->getMultiplier() == 1);
  fail_unless(fud->getUnit(1)->getScale() == 0);
  fail_unless(fud->getUnit(1)->getExponent() == -1);
  fail_unless(fud->getUnit(1)->getOffset() == 0.0);
  fail_unless(fud->getUnit(1)->getKind() == UNIT_KIND_LITRE);

  fud = m->getSpecies(1)->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 1);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == -2);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  fud = m->getSpecies(2)->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 2);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == -2);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  fail_unless(fud->getUnit(1)->getMultiplier() == 1);
  fail_unless(fud->getUnit(1)->getScale() == 0);
  fail_unless(fud->getUnit(1)->getExponent() == -1);
  fail_unless(fud->getUnit(1)->getOffset() == 0.0);
  fail_unless(fud->getUnit(1)->getKind() == UNIT_KIND_LITRE);

}

Пример #4

Файл: TestDerivedUnitDefinitions.cpp Проект: 0u812/roadrunner-backup

END_TEST

START_TEST (test_DerivedUnitDefinition_rule)
{
  UnitDefinition *fud = m->getRule(0)->getDerivedUnitDefinition();
  bool undecl = m->getRule(0)->containsUndeclaredUnits();

  fail_unless(undecl == 1);

  fail_unless(fud->getNumUnits() == 0);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);


  fud = m->getRule(1)->getDerivedUnitDefinition();
  undecl = m->getRule(1)->containsUndeclaredUnits();

  fail_unless(undecl == 1);

  fail_unless(fud->getNumUnits() == 2);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  fail_unless(fud->getUnit(1)->getMultiplier() == 1);
  fail_unless(fud->getUnit(1)->getScale() == 0);
  fail_unless(fud->getUnit(1)->getExponent() == -1);
  fail_unless(fud->getUnit(1)->getOffset() == 0.0);
  fail_unless(fud->getUnit(1)->getKind() == UNIT_KIND_SECOND);

  fud = m->getRule(2)->getDerivedUnitDefinition();
  undecl = m->getRule(2)->containsUndeclaredUnits();

  fail_unless(undecl == 1);

  fail_unless(fud->getNumUnits() == 1);
  
  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_LITRE);
}

Пример #5

Файл: TestUnitFormulaFormatter.cpp Проект: mgaldzic/copasi_api

END_TEST

START_TEST (test_UnitFormulaFormatter_getUnitDefinition_times)
{
  UnitDefinition * ud = new UnitDefinition(2, 4);

  ud = uff->getUnitDefinition(m->getRule(5)->getMath());

  fail_unless(ud->getNumUnits() == 2);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 2);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  fail_unless(ud->getUnit(1)->getMultiplier() == 1);
  fail_unless(ud->getUnit(1)->getScale() == 0);
  fail_unless(ud->getUnit(1)->getExponent() == -1);
  fail_unless(ud->getUnit(1)->getOffset() == 0.0);
  fail_unless(ud->getUnit(1)->getKind() == UNIT_KIND_SECOND);

  ud = uff->getUnitDefinition(m->getRule(9)->getMath());

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  /* check an invalid node */
  delete ud;
  UnitDefinition * ud1 = new UnitDefinition(m->getLevel(), m->getVersion());
  ASTNode *node = new ASTNode(AST_TIMES);
  
  ud1 = uff->getUnitDefinition(node);

  fail_unless (ud1->getNumUnits() == 0);

  delete ud1;
  delete node;

}

Пример #6

Файл: TestCalculatedUnitDefinitions.cpp Проект: 0u812/libsbml.js.frozen

END_TEST


START_TEST (test_CalcUnitDefinition_local1)
{
  UnitDefinition *fud = m->getReaction("R5")->getKineticLaw()
    ->getLocalParameter(0)->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 0);

  m->getReaction("R5")->getKineticLaw()
    ->getLocalParameter(0)->setCalculatingUnits(true);
  fud = m->getReaction("R5")->getKineticLaw()
    ->getLocalParameter(0)->getDerivedUnitDefinition();
  m->getReaction("R5")->getKineticLaw()
    ->getLocalParameter(0)->setCalculatingUnits(false);

  fail_unless(fud->getNumUnits() == 1);
  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_SECOND);
}

Пример #7

Файл: TestCalculatedUnitDefinitions.cpp Проект: 0u812/libsbml.js.frozen

END_TEST


START_TEST (test_CalcUnitDefinition_assignmentRule1)
{
  UnitDefinition *fud = m->getParameter("e")->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 0);

  m->getParameter("e")->setCalculatingUnits(true);
  fud = m->getParameter("e")->getDerivedUnitDefinition();
  m->getParameter("e")->setCalculatingUnits(false);

  fail_unless(fud->getNumUnits() == 2);
  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  fail_unless(fud->getUnit(1)->getMultiplier() == 1);
  fail_unless(fud->getUnit(1)->getScale() == 0);
  fail_unless(fud->getUnit(1)->getExponent() == -1);
  fail_unless(fud->getUnit(1)->getOffset() == 0.0);
  fail_unless(fud->getUnit(1)->getKind() == UNIT_KIND_SECOND);
  delete fud;
}

Пример #8

Файл: TestUnitFormulaFormatter.cpp Проект: mgaldzic/copasi_api

END_TEST


START_TEST (test_UnitFormulaFormatter_getUnitDefinition_reaction)
{
  UnitDefinition * ud = new UnitDefinition(2, 4);

  ud = uff->getUnitDefinition(m->getRule(13)->getMath());

  fail_unless(ud->getNumUnits() == 3);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  fail_unless(ud->getUnit(1)->getMultiplier() == 1);
  fail_unless(ud->getUnit(1)->getScale() == 0);
  fail_unless(ud->getUnit(1)->getExponent() == 1);
  fail_unless(ud->getUnit(1)->getOffset() == 0.0);
  fail_unless(ud->getUnit(1)->getKind() == UNIT_KIND_MOLE);

  fail_unless(ud->getUnit(2)->getMultiplier() == 1);
  fail_unless(ud->getUnit(2)->getScale() == 0);
  fail_unless(ud->getUnit(2)->getExponent() == -1);
  fail_unless(ud->getUnit(2)->getOffset() == 0.0);
  fail_unless(ud->getUnit(2)->getKind() == UNIT_KIND_SECOND);

  delete ud;

}

Пример #9

Файл: TestUnitFormulaFormatter2.cpp Проект: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_UnitFormulaFormatter2_getUnitDefinition_model_extent)
{
  UnitDefinition * ud = NULL;

  /* model extent units */
  ud = uff->getExtentUnitDefinition();

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);


  /* check deals with invalid nodes */
  delete ud;
  UnitDefinition * ud1 = NULL;
  
  m->unsetExtentUnits();

  ud1 = uff->getExtentUnitDefinition();

  fail_unless (ud1->getNumUnits() == 0);

  delete ud1;

}

Пример #10

Файл: TestDerivedUnitDefinitions.cpp Проект: 0u812/roadrunner-backup

END_TEST

START_TEST (test_DerivedUnitDefinition_reaction)
{
  UnitDefinition *fud = m->getReaction(0)->getKineticLaw()->getDerivedUnitDefinition();
  bool undecl = m->getReaction(0)->getKineticLaw()->containsUndeclaredUnits();

  fail_unless(undecl == 0);

  fail_unless(fud->getNumUnits() == 2);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  fail_unless(fud->getUnit(1)->getMultiplier() == 1);
  fail_unless(fud->getUnit(1)->getScale() == 0);
  fail_unless(fud->getUnit(1)->getExponent() == -1);
  fail_unless(fud->getUnit(1)->getOffset() == 0.0);
  fail_unless(fud->getUnit(1)->getKind() == UNIT_KIND_SECOND);

  fud = m->getReaction(0)->getReactant(0)->getStoichiometryMath()->getDerivedUnitDefinition();
  undecl = m->getReaction(0)->getReactant(0)->getStoichiometryMath()->containsUndeclaredUnits();

  fail_unless(undecl == 1);

  fail_unless(fud->getNumUnits() == 0);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);


}

Пример #11

Файл: TestInferUnitsConverter.cpp Проект: sn248/Rcppsbml

END_TEST


START_TEST (test_infer_newUD)
{
  string filename(TestDataDirectory);
  filename += "inferUnits.xml";

  SBMLDocument* d = readSBMLFromFile(filename.c_str());

  fail_unless(d != NULL);

  fail_unless(d->getModel()->getParameter("b")->isSetUnits() == false);
  fail_unless(d->getModel()->getNumUnitDefinitions() == 1);

  SBMLInferUnitsConverter * units = new SBMLInferUnitsConverter();

  units->setDocument(d);

  fail_unless (units->convert() == LIBSBML_OPERATION_SUCCESS);

  fail_unless(d->getModel()->getParameter("b")->isSetUnits() == true);
  fail_unless(d->getModel()->getParameter("b")->getUnits() == "unitSid_0");

  fail_unless(d->getModel()->getNumUnitDefinitions() == 2);

  UnitDefinition *ud = d->getModel()->getUnitDefinition(1);

  fail_unless(ud->getId() == "unitSid_0");
  fail_unless(ud->getNumUnits() == 2);
  
  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_LITRE);

  fail_unless(ud->getUnit(1)->getMultiplier() == 1);
  fail_unless(ud->getUnit(1)->getScale() == 0);
  fail_unless(ud->getUnit(1)->getExponent() == 1);
  fail_unless(ud->getUnit(1)->getOffset() == 0.0);
  fail_unless(ud->getUnit(1)->getKind() == UNIT_KIND_METRE);

  delete units;
  delete d;
}

Пример #12

Файл: TestDerivedUnitDefinitions.cpp Проект: 0u812/roadrunner-backup

END_TEST

START_TEST (test_DerivedUnitDefinition_initialassignment)
{
  UnitDefinition *fud = m->getInitialAssignment(0)->getDerivedUnitDefinition();
  bool undecl = m->getInitialAssignment(0)->containsUndeclaredUnits();

  fail_unless(undecl == 1);

  fail_unless(fud->getNumUnits() == 1);

  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == -2);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

}

Пример #13

Файл: SbmlReader.cpp Проект: csiki/moose-csiki

double SbmlReader::unitsforRates() {
    double lvalue =1;
    for (unsigned int n=0; n < model_->getNumUnitDefinitions(); n++) {
        UnitDefinition * ud = model_->getUnitDefinition(n);
        for (unsigned int ut=0; ut <ud->getNumUnits(); ut++) {
            Unit * unit = ud->getUnit(ut);
            if (ud->getId() == "substance") {
                if ( unit->isMole() ) {
                    double exponent = unit->getExponent();
                    double multiplier = unit->getMultiplier();
                    int scale = unit->getScale();
                    double offset = unit->getOffset();
                    lvalue *= pow( multiplier * pow(10.0,scale), exponent ) + offset;
                    return lvalue;
                }
            }
        }
    }
    return lvalue;
}//unitforRates

Пример #14

Файл: TestUnitFormulaFormatter.cpp Проект: mgaldzic/copasi_api

END_TEST

START_TEST (test_UnitFormulaFormatter_getUnitDefinition_invtrig)
{
  UnitDefinition * ud = new UnitDefinition(2, 4);

  ud = uff->getUnitDefinition(m->getRule(2)->getMath());

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_DIMENSIONLESS);

  delete ud;

}

Пример #15

Файл: TestCalculatedUnitDefinitions.cpp Проект: 0u812/libsbml.js.frozen

END_TEST


START_TEST (test_CalcUnitDefinition_global_with_local_known)
{
  UnitDefinition *fud = m->getParameter("q")->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 0);

  m->getParameter("q")->setCalculatingUnits(true);
  fud = m->getParameter("q")->getDerivedUnitDefinition();
  m->getParameter("q")->setCalculatingUnits(false);

  fail_unless(fud->getNumUnits() == 1);
  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_LITRE);
}

Пример #16

Файл: TestUnitFormulaFormatter.cpp Проект: mgaldzic/copasi_api

END_TEST

START_TEST (test_UnitFormulaFormatter_getUnitDefinition_piecewise)
{
  UnitDefinition * ud = new UnitDefinition(2, 4);

  ud = uff->getUnitDefinition(m->getRule(7)->getMath());

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  /* check deals with invalid nodes */
  delete ud;
  UnitDefinition * ud1 = new UnitDefinition(m->getLevel(), m->getVersion());
  ASTNode *node = new ASTNode(AST_FUNCTION_PIECEWISE);

  ud1 == uff->getUnitDefinition(node);

  fail_unless (ud1->getNumUnits() == 0);

  ASTNode *c = new ASTNode(AST_UNKNOWN);
  node->addChild(c);
  
  ud1 == uff->getUnitDefinition(node);

  fail_unless (ud1->getNumUnits() == 0);

  delete ud1;
  delete node;
}

Пример #17

Файл: TestUnitFormulaFormatter2.cpp Проект: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_UnitFormulaFormatter2_getUnitDefinition_event)
{
  UnitDefinition * ud = NULL;

  /* event with no time units */
  ud = uff->getUnitDefinitionFromEventTime(m->getEvent(0));

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 60);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_SECOND);


  /* check deals with invalid nodes */
  delete ud;
  UnitDefinition * ud1 = NULL;
  
  Event *e = new Event(m->getLevel(), m->getVersion());
  e->setId("p");
  m->unsetTimeUnits();

  ud1 = uff->getUnitDefinitionFromEventTime(e);

  fail_unless (ud1->getNumUnits() == 0);

  delete e;
  delete ud1;

}

Пример #18

Файл: TestCalculatedUnitDefinitions.cpp Проект: 0u812/libsbml.js.frozen

END_TEST


START_TEST (test_CalcUnitDefinition_priority)
{
  UnitDefinition *fud = m->getParameter("m")->getDerivedUnitDefinition();

  fail_unless(fud->getNumUnits() == 0);

  m->getParameter("m")->setCalculatingUnits(true);
  fud = m->getParameter("m")->getDerivedUnitDefinition();
  m->getParameter("m")->setCalculatingUnits(false);

  fail_unless(fud->getNumUnits() == 1);
  fail_unless(!strcmp(fud->getId().c_str(), ""), NULL);

  fail_unless(fud->getUnit(0)->getMultiplier() == 1);
  fail_unless(fud->getUnit(0)->getScale() == 0);
  fail_unless(fud->getUnit(0)->getExponent() == 1);
  fail_unless(fud->getUnit(0)->getOffset() == 0.0);
  fail_unless(fud->getUnit(0)->getKind() == UNIT_KIND_DIMENSIONLESS);

  delete fud;
}

Пример #19

Файл: TestUnitFormulaFormatter2.cpp Проект: sys-bio/libroadrunner-deps

END_TEST


START_TEST (test_UnitFormulaFormatter2_getUnitDefinition_species_extent)
{
  UnitDefinition * ud = NULL;

  /* model extent units + conversion on species*/
  ud = uff->getSpeciesExtentUnitDefinition(m->getSpecies(0));

  fail_unless(ud->getNumUnits() == 2);
  
  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  fail_unless(ud->getUnit(1)->getMultiplier() == 1);
  fail_unless(ud->getUnit(1)->getScale() == 0);
  fail_unless(ud->getUnit(1)->getExponent() == 1);
  fail_unless(ud->getUnit(1)->getOffset() == 0.0);
  fail_unless(ud->getUnit(1)->getKind() == UNIT_KIND_SECOND);


  delete ud;

  /* model extent units + conversion on model*/
  ud = uff->getSpeciesExtentUnitDefinition(m->getSpecies(1));

  fail_unless(ud->getNumUnits() == 2);
  
  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  fail_unless(ud->getUnit(1)->getMultiplier() == 1);
  fail_unless(ud->getUnit(1)->getScale() == 0);
  fail_unless(ud->getUnit(1)->getExponent() == 1);
  fail_unless(ud->getUnit(1)->getOffset() == 0.0);
  fail_unless(ud->getUnit(1)->getKind() == UNIT_KIND_SECOND);

  /* check deals with invalid nodes */
  delete ud;
  UnitDefinition * ud1 = NULL;
  
  m->unsetConversionFactor();

  ud1 = uff->getSpeciesExtentUnitDefinition(m->getSpecies(1));

  fail_unless (ud1->getNumUnits() == 0);
  
  m->getSpecies(0)->unsetConversionFactor();

  delete ud1;

  ud1 = uff->getSpeciesExtentUnitDefinition(m->getSpecies(0));

  fail_unless (ud1->getNumUnits() == 0);

  m->getSpecies(0)->setConversionFactor("cf");

  m->unsetExtentUnits();

  delete ud1;

  ud1 = uff->getSpeciesExtentUnitDefinition(m->getSpecies(0));

  fail_unless (ud1->getNumUnits() == 0);

  delete ud1;

}

Пример #20

Файл: CompIdBase.cpp Проект: sbmlteam/python-libsbml

void
CompIdBase::checkId (const UnitDefinition& x)
{
  if (x.isSetId()) doCheckId(x.getId(), x);
}

Пример #21

Файл: TestUnitFormulaFormatter2.cpp Проект: sys-bio/libroadrunner-deps

END_TEST

START_TEST (test_UnitFormulaFormatter2_getUnitDefinition_parameter)
{
  UnitDefinition * ud = NULL;
 
  /* parameter with declared standard units */
  ud = uff->getUnitDefinitionFromParameter(m->getParameter(0));

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  delete ud;

  /* parameter with declared units from unit definition */
  ud = uff->getUnitDefinitionFromParameter(m->getParameter(1));

  fail_unless(ud->getNumUnits() == 2);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_METRE);

  fail_unless(ud->getUnit(1)->getMultiplier() == 1);
  fail_unless(ud->getUnit(1)->getScale() == 0);
  fail_unless(ud->getUnit(1)->getExponent() == -1);
  fail_unless(ud->getUnit(1)->getOffset() == 0.0);
  fail_unless(ud->getUnit(1)->getKind() == UNIT_KIND_SECOND);

  delete ud;

  /* parameter with no declared units */
  ud = uff->getUnitDefinitionFromParameter(m->getParameter(2));

  fail_unless(ud->getNumUnits() == 0);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);
 
  /* check deals with invalid nodes */
  delete ud;
  UnitDefinition * ud1 = NULL;
  
  Parameter *p = new Parameter(m->getLevel(), m->getVersion());
  p->setId("p");
  p->setUnits("undefined");

  ud1 = uff->getUnitDefinitionFromParameter(p);

  fail_unless (ud1->getNumUnits() == 0);

  delete p;
  delete ud1;

}

Пример #22

Файл: TestUnitFormulaFormatter2.cpp Проект: sys-bio/libroadrunner-deps

END_TEST

START_TEST (test_UnitFormulaFormatter2_getUnitDefinition_species)
{
  UnitDefinition * ud = NULL;
  
  /* species with declared standard units for substance and comp with units*/
  ud = uff->getUnitDefinitionFromSpecies(m->getSpecies(0));

  fail_unless(ud->getNumUnits() == 2);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  fail_unless(ud->getUnit(1)->getMultiplier() == 1);
  fail_unless(ud->getUnit(1)->getScale() == 0);
  fail_unless(ud->getUnit(1)->getExponent() == -1);
  fail_unless(ud->getUnit(1)->getOffset() == 0.0);
  fail_unless(ud->getUnit(1)->getKind() == UNIT_KIND_LITRE);

  delete ud;

  ud = uff->getSpeciesSubstanceUnitDefinition(m->getSpecies(0));

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  delete ud;

  /* species with declared standard units for substance 
  and hasOnlySubstanceUnits = 1*/
  ud = uff->getUnitDefinitionFromSpecies(m->getSpecies(1));

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == -2);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  delete ud;

  ud = uff->getSpeciesSubstanceUnitDefinition(m->getSpecies(1));

  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == -2);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  delete ud;

  /* species with units from model substance*/
  ud = uff->getUnitDefinitionFromSpecies(m->getSpecies(2));

  fail_unless(ud->getNumUnits() == 2);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  fail_unless(ud->getUnit(1)->getMultiplier() == 1);
  fail_unless(ud->getUnit(1)->getScale() == 0);
  fail_unless(ud->getUnit(1)->getExponent() == -1);
  fail_unless(ud->getUnit(1)->getOffset() == 0.0);
  fail_unless(ud->getUnit(1)->getKind() == UNIT_KIND_LITRE);

  delete ud;

  ud = uff->getSpeciesSubstanceUnitDefinition(m->getSpecies(2));
 
  fail_unless(ud->getNumUnits() == 1);

  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);

  delete ud;

  /* species with declared standard units for substance and no spatialSizeUnits*/
  ud = uff->getUnitDefinitionFromSpecies(m->getSpecies(3));

  fail_unless(ud->getNumUnits() == 0);

  delete ud;

  ud = uff->getSpeciesSubstanceUnitDefinition(m->getSpecies(3));
 
  fail_unless(ud->getNumUnits() == 1);
 
  fail_unless(!strcmp(ud->getId().c_str(), ""), NULL);

  fail_unless(ud->getUnit(0)->getMultiplier() == 1);
  fail_unless(ud->getUnit(0)->getScale() == 0);
  fail_unless(ud->getUnit(0)->getExponent() == 1);
  fail_unless(ud->getUnit(0)->getOffset() == 0.0);
  fail_unless(ud->getUnit(0)->getKind() == UNIT_KIND_MOLE);


  ///* check deals with invalid nodes */
  delete ud;
  UnitDefinition * ud1 = NULL;
  
  Species *s = new Species(m->getLevel(), m->getVersion());
  s->setId("s");
  s->setUnits("undefined");

  ud1 = uff->getUnitDefinitionFromSpecies(s);

  fail_unless (ud1->getNumUnits() == 0);

  delete ud1;

  ud1 = uff->getSpeciesSubstanceUnitDefinition(s);

  fail_unless (ud1->getNumUnits() == 0);

  s->setUnits("mole"); // here the compartment size will be NULL

  delete ud1;

  ud1 = uff->getUnitDefinitionFromSpecies(s);

  fail_unless (ud1->getNumUnits() == 1);

  delete ud1;

  ud1 = uff->getSpeciesSubstanceUnitDefinition(s);

  fail_unless (ud1->getNumUnits() == 1);

  delete s;
  delete ud1;

}