ZObject3dScan ZDvidInfo::getBlockIndex(const ZObject3dScan &obj) const
{
ZIntPoint gridSize = m_endBlockIndex - m_startBlockIndex + 1;
size_t area = ((size_t) gridSize.getX()) * gridSize.getY();
size_t blockNumber = area * gridSize.getZ();
std::vector<bool> isAdded(blockNumber, false);
//std::set<ZIntPoint> blockSet;
//ZIntPointArray blockArray;
ZObject3dScan blockObj;
for (size_t i = 0; i < obj.getStripeNumber(); ++i) {
#ifdef _DEBUG_2
if (i % 10000 == 0) {
std::cout << i << "/" << obj.getStripeNumber() << std::endl;
}
#endif
const ZObject3dStripe &stripe = obj.getStripe(i);
int y = stripe.getY();
int z = stripe.getZ();
if (y > 0 && z > 0 && y < m_startCoordinates[1] + m_stackSize[1] &&
z < m_startCoordinates[2] + m_stackSize[2]) {
for (int j = 0; j < stripe.getSegmentNumber(); ++j) {
int x0 = stripe.getSegmentStart(j);
int x1 = stripe.getSegmentEnd(j);
if (x0 < 0) {
x0 = 0;
} else if (x0 >= m_startCoordinates[0] + m_stackSize[0]) {
x0 = m_startCoordinates[0] + m_stackSize[0] - 1;
}
if (x1 < 0) {
x1 = 0;
} else if (x1 >= m_startCoordinates[0] + m_stackSize[0]) {
x1 = m_startCoordinates[0] + m_stackSize[0] - 1;
}
ZIntPoint block1 = getBlockIndex(x0, y, z);
size_t blockIndex1 = area * block1.getZ() +
gridSize.getY() * block1.getY() + block1.getX();
ZIntPoint block2 = getBlockIndex(x1, y, z);
size_t blockIndex2 = area * block2.getZ() +
gridSize.getY() * block2.getY() + block2.getX();
if (!isAdded[blockIndex1] || !isAdded[blockIndex2]) {
blockObj.addSegment(
block1.getZ(), block1.getY(), block1.getX(), block2.getX(), false);
isAdded[blockIndex1] = true;
isAdded[blockIndex2] = true;
}
}
}
}
//blockArray.append(blockSet.begin(), blockSet.end());
blockObj.canonize();
return blockObj;
}
ZSwcTree* ZSwcGenerator::createSwc(
const ZObject3dScan &blockObj, int z, const ZDvidInfo &dvidInfo)
{
#ifdef _FLYEM_
ZObject3dScan slice = blockObj.getSlice(z);
size_t stripeNumber = slice.getStripeNumber();
ZSwcTree *tree = new ZSwcTree;
for (size_t s = 0; s < stripeNumber; ++s) {
const ZObject3dStripe &stripe = slice.getStripe(s);
int nseg = stripe.getSegmentNumber();
int y = stripe.getY();
int z = stripe.getZ();
for (int i = 0; i < nseg; ++i) {
int x0 = stripe.getSegmentStart(i);
int x1 = stripe.getSegmentEnd(i);
for (int x = x0; x <= x1; ++x) {
ZIntCuboid cuboid = dvidInfo.getBlockBox(x, y, z);
tree->merge(createBoxSwc(cuboid));
}
}
}
return tree;
#else
UNUSED_PARAMETER(&blockObj);
UNUSED_PARAMETER(z);
UNUSED_PARAMETER(&dvidInfo);
return NULL;
#endif
}
void ZSparseObject::append(const ZObject3dScan &obj)
{
for (size_t i = 0; i < obj.getStripeNumber(); ++i) {
m_stripeArray.push_back(obj.getStripe(i));
}
}
