element_type exact_project(const space_ptrtype & Xh, const double & val)
{
ex solution = getSolution(val);
auto mesh = Xh->mesh();
auto gproj = vf::project( _space=Xh, _range=elements( mesh ), _expr=expr(solution,vars) );
return gproj;
}
element_type rhs_project(const space_ptrtype & Xh)
{
ex solution = getRhs();
auto mesh = Xh->mesh();
auto gproj = vf::project( _space=Xh, _range=elements( mesh ), _expr=expr(solution,vars) );
return gproj;
}
double L2_error(const space_ptrtype & Xh, const element_type & T, const double & values) const
{
// replace params by specified values
ex solution = getSolution(values);
auto g = expr(solution,vars);
auto mesh = Xh->mesh();
return math::sqrt( integrate( elements(mesh), Px()*(idv(T) - g)*(idv(T) - g) ).evaluate()(0,0) );
}
element_type grad_exact_project(const space_ptrtype & Xh)
{
ex solution = getSolution();
auto gradg = expr<1,Dim,2>(grad(solution,vars), vars );
auto mesh = Xh->mesh();
auto gproj = vf::project( _space=Xh, _range=elements( mesh ), _expr=expr(gradg,vars) );
return gproj;
}
double H1_error(const space_ptrtype & Xh, const element_type & T, const double & values) const
{
// replace params by specified values
ex solution = getSolution(values);
auto gradg = expr<1,Dim,2>(grad(solution,vars), vars );
auto mesh = Xh->mesh();
double L2error = L2_error(Xh, T, values);
double H1seminorm = math::sqrt( integrate( elements(mesh), Px()*(gradv(T) - gradg)*trans(gradv(T) - gradg) ).evaluate()(0,0) );
return math::sqrt( L2error*L2error + H1seminorm*H1seminorm);
}
PreconditionerAS<space_type,coef_space_type>::PreconditionerAS( std::string t,
space_ptrtype Xh,
coef_space_ptrtype Mh,
BoundaryConditions bcFlags,
std::string const& p,
sparse_matrix_ptrtype Pm,
double k )
:
M_type( AS ),
M_Xh( Xh ),
M_Vh(Xh->template functionSpace<0>() ),
M_Qh(Xh->template functionSpace<1>() ),
M_Mh( Mh ),
M_Vh_indices( M_Vh->nLocalDofWithGhost() ),
M_Qh_indices( M_Qh->nLocalDofWithGhost() ),
M_Qh3_indices( Dim ),
A(backend()->newVector(M_Vh)),
B(backend()->newVector(M_Vh)),
C(backend()->newVector(M_Vh)),
M_r(backend()->newVector(M_Vh)),
M_r_t(backend()->newVector(M_Vh)),
M_uout(backend()->newVector(M_Vh)),
M_diagPm(backend()->newVector(M_Vh)),
//M_t(backend()->newVector(M_Vh)),
U( M_Vh, "U" ),
M_mu(M_Mh, "mu"),
M_er(M_Mh, "er"),
M_bcFlags( bcFlags ),
M_prefix( p ),
M_k(k),
M_g(1.-k*k)
{
tic();
LOG(INFO) << "[PreconditionerAS] setup starts";
this->setMatrix( Pm ); // Needed only if worldComm > 1
// QH3 : Lagrange vectorial space type
M_Qh3 = lag_v_space_type::New(Xh->mesh());
M_qh3_elt = M_Qh3->element();
M_qh_elt = M_Qh->element();
M_vh_elt = M_Vh->element();
// Block 11.1
M_s = backend()->newVector(M_Qh3);
M_y = backend()->newVector(M_Qh3);
// Block 11.2
M_z = backend()->newVector(M_Qh);
M_t = backend()->newVector(M_Qh);
// Create the interpolation and keep only the matrix
auto pi_curl = I(_domainSpace=M_Qh3, _imageSpace=M_Vh);
auto Igrad = Grad( _domainSpace=M_Qh, _imageSpace=M_Vh);
M_P = pi_curl.matPtr();
M_C = Igrad.matPtr();
M_Pt = backend()->newMatrix(M_Qh3,M_Vh);
M_Ct = backend()->newMatrix(M_Qh3,M_Vh);
M_P->transpose(M_Pt,MATRIX_TRANSPOSE_UNASSEMBLED);
M_C->transpose(M_Ct,MATRIX_TRANSPOSE_UNASSEMBLED);
LOG(INFO) << "size of M_C = " << M_C->size1() << ", " << M_C->size2() << std::endl;
LOG(INFO) << "size of M_P = " << M_P->size1() << ", " << M_P->size2() << std::endl;
// Create vector of indices to create subvectors/matrices
std::iota( M_Vh_indices.begin(), M_Vh_indices.end(), 0 ); // Vh indices in Xh
std::iota( M_Qh_indices.begin(), M_Qh_indices.end(), M_Vh->nLocalDofWithGhost() ); // Qh indices in Xh
// "Components" of Qh3
auto Qh3_dof_begin = M_Qh3->dof()->dofPointBegin();
auto Qh3_dof_end = M_Qh3->dof()->dofPointEnd();
int dof_comp, dof_idx;
for( auto it = Qh3_dof_begin; it!= Qh3_dof_end; it++ )
{
dof_comp = it->template get<2>(); //Component
dof_idx = it->template get<1>(); //Global index
M_Qh3_indices[dof_comp].push_back( dof_idx );
}
// Subvectors for M_y (per component)
M_y1 = M_y->createSubVector(M_Qh3_indices[0], true);
M_y2 = M_y->createSubVector(M_Qh3_indices[1], true);
#if FEELPP_DIM == 3
M_y3 = M_y->createSubVector(M_Qh3_indices[2], true);
#endif
// Subvectors for M_s (per component)
M_s1 = M_y->createSubVector(M_Qh3_indices[0], true);
M_s2 = M_y->createSubVector(M_Qh3_indices[1], true);
#if FEELPP_DIM == 3
M_s3 = M_y->createSubVector(M_Qh3_indices[2], true);
#endif
this->setType ( t );
toc( "[PreconditionerAS] setup done ", FLAGS_v > 0 );
}
void
AdvectionDiffusion::initModel()
{
// geometry is a ]0,1[x]0,1[
GeoTool::Node x1( 0,0 );
GeoTool::Node x2( 1,1 );
GeoTool::Rectangle R( meshSize,"Omega",x1,x2 );
R.setMarker( _type="line",_name="Inflow",_marker4=true );
R.setMarker( _type="line",_name="Bottom",_marker1=true );
R.setMarker( _type="line",_name="Top",_marker3=true );
R.setMarker( _type="line",_name="Outflow",_marker2=true );
R.setMarker( _type="surface",_name="Omega",_markerAll=true );
mesh = R.createMesh( _mesh=new mesh_type, _name="Omega" );
/*
* The function space and some associate elements are then defined
*/
Xh = space_type::New( mesh );
RbXh = rbfunctionspace_type::New( this->shared_from_this() , mesh );
// allocate an element of Xh
pT = element_ptrtype( new element_type( Xh ) );
// initialisation de A1 et A2
M_Aqm.resize( Qa() );
for(int q=0; q<Qa(); q++)
{
M_Aqm[q].resize( 1 );
M_Aqm[q][0] = backend->newMatrix( Xh, Xh );
}
M_Fqm.resize( this->Nl() );
for(int l=0; l<Nl(); l++)
{
M_Fqm[l].resize( Ql(l) );
for(int q=0; q<Ql(l) ; q++)
{
M_Fqm[l][q].resize(1);
M_Fqm[l][q][0] = backend->newVector( Xh );
}
}
D = backend->newMatrix( Xh, Xh );
F = backend->newVector( Xh );
using namespace Feel::vf;
Feel::ParameterSpace<2>::Element mu_min( M_Dmu );
mu_min << 1, 0.1;
M_Dmu->setMin( mu_min );
Feel::ParameterSpace<2>::Element mu_max( M_Dmu );
mu_max << 10,100;
M_Dmu->setMax( mu_max );
element_type u( Xh, "u" );
element_type v( Xh, "v" );
std::cout << "Number of dof " << Xh->nLocalDof() << "\n";
// right hand side
form1( Xh, M_Fqm[0][0][0], _init=true ) = integrate( markedfaces( mesh, "Bottom" ), id( v ) );
M_Fqm[0][0][0]->close();
form2( Xh, Xh, M_Aqm[0][0], _init=true ) = integrate( elements( mesh ), Py()*dxt( u )*id( v ) );
M_Aqm[0][0]->close();
form2( Xh, Xh, M_Aqm[1][0], _init=true ) = integrate( elements( mesh ), dxt( u )*dx( v ) );
M_Aqm[1][0]->close();
form2( Xh, Xh, M_Aqm[2][0], _init=true ) = integrate( elements( mesh ), dyt( u )*dy( v ) );
form2( Xh, Xh, M_Aqm[2][0] ) += integrate( markedfaces( mesh,"Top" ),
- dyt( u )*Ny()*id( v ) - dy( u )*Ny()*idt( v ) + 20*idt( u )*id( v )/hFace() );
M_Aqm[2][0]->close();
form2( Xh, Xh, M_Aqm[3][0], _init=true ) = integrate( markedfaces( mesh,"Inflow" ),
- dxt( u )*Nx()*id( v ) - dx( u )*Nx()*idt( v ) );
M_Aqm[3][0]->close();
form2( Xh, Xh, M_Aqm[4][0], _init=true ) = integrate( markedfaces( mesh,"Inflow" ),
20*idt( u )*id( v )/hFace() );
M_Aqm[4][0]->close();
M = backend->newMatrix( Xh, Xh );
form2( Xh, Xh, M, _init=true ) =
integrate( elements( mesh ), id( u )*idt( v ) + grad( u )*trans( gradt( u ) ) );
M->close();
} // AdvectionDiffusion::run
void
Microphone::init()
{
if ( M_is_initialized )
return;
M_is_initialized = true;
LOG(INFO) << "[MIC::init] starting...\n";
// geometry is a ]0,1[x]0,1[
GeoTool::Node x1( 0,0 );
GeoTool::Node x2( 1.5,0.25 );
GeoTool::Node x3( 0.5,0.25 );
GeoTool::Node x4( 1.5,0.65 );
GeoTool::Rectangle R1( meshSize,"R1",x1,x2 );
R1.setMarker( _type="line",_name="In",_marker4=true );
R1.setMarker( _type="surface",_name="Bottom",_markerAll=true );
GeoTool::Rectangle R2( meshSize,"R2",x3,x4 );
R2.setMarker( _type="surface",_name="Top",_markerAll=true );
mesh = ( R1+R2 ).createMesh<mesh_type>( "Omega" );
#if 0
/*
* The function space and some associate elements are then defined
*/
Xh = space_type::New( mesh );
// allocate an element of Xh
pT = element_ptrtype( new element_type( Xh ) );
// initialisation de A1 et A2
M_Aqm.resize( Qa() );
for(int q=0; q<Qa(); q++)
M_Aqm[q].resize( 1 );
M_Aqm[0][0] = backend->newMatrix( Xh, Xh );
M_Aqm[1][0] = backend->newMatrix( Xh, Xh );
M_Aqm[2][0] = backend->newMatrix( Xh, Xh );
M_Fqm.resize( Nl() );
M_Fqm[0].resize( Ql( 0 ) );
M_Fqm[0][0].resize(1);
M_Fqm[0][0][0] = backend->newVector( Xh );
D = backend->newMatrix( Xh, Xh );
F = backend->newVector( Xh );
using namespace Feel::vf;
static const int N = 2;
Feel::ParameterSpace<2>::Element mu_min( M_Dmu );
mu_min << 0.8, 10;
M_Dmu->setMin( mu_min );
Feel::ParameterSpace<2>::Element mu_max( M_Dmu );
mu_max << 1.2,50;
M_Dmu->setMax( mu_max );
element_type u( Xh, "u" );
element_type v( Xh, "v" );
LOG(INFO) << "Number of dof " << Xh->nLocalDof() << "\n";
// right hand side
form1( Xh, M_Fqm[0][0][0], _init=true ) = integrate( elements( mesh ), id( v ) );
M_Fqm[0][0[0]->close();
form2( Xh, Xh, M_Aqm[0][0], _init=true ) = integrate( elements( mesh ), dxt( u )*dx( v ) );
M_Aqm[0][0]->close();
form2( Xh, Xh, M_Aqm[1][0], _init=true ) = integrate( elements( mesh ), dyt( u )*dy( v ) );
// Dirichlet condition apply to Bottom, only y-dir terms non zero because of normal being N()=(Nx(),Ny()) = (0,-1)
// thus the simplification below with the signs which should -Ny() = +1
form2( Xh, Xh, M_Aqm[1][0] ) += integrate( markedfaces( mesh,"Bottom" ), dyt( u )*id( v )+dy( u )*idt( v )+M_gammabc*idt( u )*id( v )/hFace() );
M_Aqm[1][0]->close();
form2( Xh, Xh, M_Aqm[2][0], _init=true ) = integrate( elements( mesh ), idt( u )*id( v ) );
M_Aqm[2][0]->close();
M = backend->newMatrix( Xh, Xh );
form2( Xh, Xh, M, _init=true ) =
integrate( elements( mesh ), id( u )*idt( v ) + grad( u )*trans( gradt( u ) ) );
M->close();
#endif
LOG(INFO) << "[MIC::init] done\n";
} // Microphone::run
void
NavierStokes::run()
{
this->init();
auto U = Xh->element( "(u,p)" );
auto V = Xh->element( "(u,q)" );
auto u = U.element<0>( "u" );
auto v = V.element<0>( "u" );
auto p = U.element<1>( "p" );
auto q = V.element<1>( "p" );
#if defined( FEELPP_USE_LM )
auto lambda = U.element<2>();
auto nu = V.element<2>();
#endif
//# endmarker4 #
LOG(INFO) << "[dof] number of dof: " << Xh->nDof() << "\n";
LOG(INFO) << "[dof] number of dof/proc: " << Xh->nLocalDof() << "\n";
LOG(INFO) << "[dof] number of dof(U): " << Xh->functionSpace<0>()->nDof() << "\n";
LOG(INFO) << "[dof] number of dof/proc(U): " << Xh->functionSpace<0>()->nLocalDof() << "\n";
LOG(INFO) << "[dof] number of dof(P): " << Xh->functionSpace<1>()->nDof() << "\n";
LOG(INFO) << "[dof] number of dof/proc(P): " << Xh->functionSpace<1>()->nLocalDof() << "\n";
LOG(INFO) << "Data Summary:\n";
LOG(INFO) << " hsize = " << meshSize << "\n";
LOG(INFO) << " export = " << this->vm().count( "export" ) << "\n";
LOG(INFO) << " mu = " << mu << "\n";
LOG(INFO) << " bccoeff = " << penalbc << "\n";
//# marker5 #
auto deft = gradt( u )+trans(gradt(u));
auto def = grad( v )+trans(grad(v));
//# endmarker5 #
//# marker6 #
// total stress tensor (trial)
auto SigmaNt = -idt( p )*N()+mu*deft*N();
// total stress tensor (test)
auto SigmaN = -id( p )*N()+mu*def*N();
//# endmarker6 #
auto F = M_backend->newVector( Xh );
auto D = M_backend->newMatrix( Xh, Xh );
// right hand side
auto ns_rhs = form1( _test=Xh, _vector=F );
LOG(INFO) << "[navier-stokes] vector local assembly done\n";
// construction of the BDF
auto bdfns=bdf(_space=Xh);
/*
* Construction of the left hand side
*/
auto navierstokes = form2( _test=Xh, _trial=Xh, _matrix=D );
mpi::timer chrono;
navierstokes += integrate( elements( mesh ), mu*inner( deft,def )+ trans(idt( u ))*id( v )*bdfns->polyDerivCoefficient( 0 ) );
LOG(INFO) << "mu*inner(deft,def)+(bdf(u),v): " << chrono.elapsed() << "\n";
chrono.restart();
navierstokes +=integrate( elements( mesh ), - div( v )*idt( p ) + divt( u )*id( q ) );
LOG(INFO) << "(u,p): " << chrono.elapsed() << "\n";
chrono.restart();
#if defined( FEELPP_USE_LM )
navierstokes +=integrate( elements( mesh ), id( q )*idt( lambda ) + idt( p )*id( nu ) );
LOG(INFO) << "(lambda,p): " << chrono.elapsed() << "\n";
chrono.restart();
#endif
std::for_each( inflow_conditions.begin(), inflow_conditions.end(),
[&]( BoundaryCondition const& bc )
{
// right hand side
ns_rhs += integrate( markedfaces( mesh, bc.marker() ), inner( idf(&bc,BoundaryCondition::operator()),-SigmaN+penalbc*id( v )/hFace() ) );
navierstokes +=integrate( boundaryfaces( mesh ), -inner( SigmaNt,id( v ) ) );
navierstokes +=integrate( boundaryfaces( mesh ), -inner( SigmaN,idt( u ) ) );
navierstokes +=integrate( boundaryfaces( mesh ), +penalbc*inner( idt( u ),id( v ) )/hFace() );
});
std::for_each( wall_conditions.begin(), wall_conditions.end(),
[&]( BoundaryCondition const& bc )
{
navierstokes +=integrate( boundaryfaces( mesh ), -inner( SigmaNt,id( v ) ) );
navierstokes +=integrate( boundaryfaces( mesh ), -inner( SigmaN,idt( u ) ) );
navierstokes +=integrate( boundaryfaces( mesh ), +penalbc*inner( idt( u ),id( v ) )/hFace() );
});
std::for_each( outflow_conditions.begin(), outflow_conditions.end(),
[&]( BoundaryCondition const& bc )
{
ns_rhs += integrate( markedfaces( mesh, bc.marker() ), inner( idf(&bc,BoundaryCondition::operator()),N() ) );
});
LOG(INFO) << "bc: " << chrono.elapsed() << "\n";
chrono.restart();
u = vf::project( _space=Xh->functionSpace<0>(), _expr=cst(0.) );
p = vf::project( _space=Xh->functionSpace<1>(), _expr=cst(0.) );
M_bdf->initialize( U );
for( bdfns->start(); bdfns->isFinished(); bdfns->next() )
{
// add time dependent terms
auto bdf_poly = bdfns->polyDeriv();
form1( _test=Xh, _vector=Ft ) =
integrate( _range=elements(mesh), _expr=trans(idv( bdf_poly ))*id( v ) );
// add convective terms
form1( _test=Xh, _vector=Ft ) +=
integrate( _range=elements(mesh), _expr=trans(gradv(u)*idv( u ))*id(v) );
// add contrib from time independent terms
Ft->add( 1., F );
// add time stepping terms from BDF to right hand side
backend()->solve( _matrix=D, _solution=U, _rhs=Ft );
this->exportResults( bdfns->time(), U );
}
} // NavierNavierstokes::run
