Impl( EventSource& output, const URIHandler& params )
: _output( output )
, _report( params.getConfig().getReportSource( params.getReport( )),
brion::MODE_READ, params.getGIDs( ))
{
const brain::Circuit circuit( params.getConfig( ));
const auto morphologies = circuit.loadMorphologies(
params.getGIDs(), brain::Circuit::COORDINATES_GLOBAL );
helpers::addCompartmentEvents( morphologies, _report, output );
}
Impl( EventSource& output, const URIHandler& params )
: _output( output )
, _report( params.getConfig().getReportSource( params.getReport( )),
brion::MODE_READ, params.getGIDs( ))
{
const brain::Circuit circuit( params.getConfig( ));
const auto morphologies = circuit.loadMorphologies(
params.getGIDs(), brain::Circuit::Coordinates::global );
// add soma events only
helpers::addCompartmentEvents( morphologies, _report, output, true );
}
Impl( EventSource& output, const URIHandler& params )
: _output( output )
, _duration( params.getDuration( ))
, _spikesStart( 0.f )
, _spikesEnd( 0.f )
{
const brion::GIDSet& gids = params.getGIDs();
const brain::Circuit circuit( params.getConfig( ));
const brion::Vector3fs& positions = circuit.getPositions( gids );
size_t i = 0;
_gidIndex.resize( *gids.rbegin() + 1 );
for( const uint32_t gid: gids )
{
_output.add( Event( positions[ i ], VALUE_UNSET ));
_gidIndex[gid] = i++;
}
_spikesPerNeuron.resize( gids.size( ));
const std::string& spikePath = params.getSpikes();
_loadSpikes( spikePath.empty() ? params.getConfig().getSpikeSource() :
brion::URI( spikePath ));
}
explicit Impl( const URI& parameters )
: uri( parameters )
, useTestData( false )
{
if( getType() == VolumeType::test )
return;
#ifdef FIVOX_USE_BBPTESTDATA
useTestData = uri.getPath().empty( );
config.reset( new brion::BlueConfig( useTestData ? BBP_TEST_BLUECONFIG3
: uri.getPath( )));
#else
config.reset( new brion::BlueConfig( uri.getPath( )));
#endif
const brain::Circuit circuit( *config );
const std::string target = _get( "target", _get( "postTarget",
useTestData ? "mini50" : config->getCircuitTarget( )));
const std::string preTarget = _get( "preTarget" );
const float gidFraction = getGIDFraction();
if( target == "*" )
{
gids = gidFraction == 1.f ? circuit.getGIDs()
: circuit.getRandomGIDs( gidFraction );
}
else
{
gids = gidFraction == 1.f ? circuit.getGIDs( target )
: circuit.getRandomGIDs( gidFraction, target );
if( !preTarget.empty( ))
{
preGIDs = gidFraction == 1.f ? circuit.getGIDs( preTarget )
: circuit.getRandomGIDs( gidFraction, preTarget );
if( preGIDs.empty( ))
LBTHROW( std::runtime_error(
"No GIDs found for requested target '" +
preTarget + "'" ));
}
}
if( gids.empty( ))
LBTHROW( std::runtime_error(
"No GIDs found for requested target '" + target + "'" ));
}
