int main (int argc, char* argv[])
{
LOGOG_INITIALIZE();
logog::Cout* logog_cout (new logog::Cout);
BaseLib::LogogSimpleFormatter *custom_format (new BaseLib::LogogSimpleFormatter);
logog_cout->SetFormatter(*custom_format);
TCLAP::CmdLine cmd("Converts VTK mesh into OGS mesh.", ' ', "0.1");
TCLAP::ValueArg<std::string> mesh_in("i", "mesh-input-file",
"the name of the file containing the input mesh", true,
"", "file name of input mesh");
cmd.add(mesh_in);
TCLAP::ValueArg<std::string> mesh_out("o", "mesh-output-file",
"the name of the file the mesh will be written to", true,
"", "file name of output mesh");
cmd.add(mesh_out);
cmd.parse(argc, argv);
MeshLib::Mesh* mesh (FileIO::BoostVtuInterface::readVTUFile(mesh_in.getValue()));
INFO("Mesh read: %d nodes, %d elements.", mesh->getNNodes(), mesh->getNElements());
FileIO::Legacy::MeshIO meshIO;
meshIO.setMesh(mesh);
meshIO.writeToFile(mesh_out.getValue());
delete custom_format;
delete logog_cout;
LOGOG_SHUTDOWN();
return 0;
}
int MshView::writeToFile() const
{
QModelIndex index = this->selectionModel()->currentIndex();
if (!index.isValid())
{
OGSError::box("No mesh selected.");
return 0;
}
const MeshLib::Mesh* mesh = static_cast<MshModel*>(this->model())->getMesh(index);
if (mesh)
{
QString mshName = QString::fromStdString(
static_cast<MshModel*>(this->model())->getMesh(index)->getName());
QString fileName = QFileDialog::getSaveFileName(NULL, "Save mesh as",
LastSavedFileDirectory::getDir() + QString::fromStdString(mesh->getName()),
"VTK Unstructured Grid (*.vtu);;GeoSys legacy mesh file (*.msh)");
if (!fileName.isEmpty())
{
QFileInfo fi(fileName);
if (fi.suffix().toLower() == "vtu")
{
FileIO::BoostVtuInterface vtkIO;
vtkIO.setMesh(mesh);
vtkIO.writeToFile(fileName.toStdString().c_str());
}
if (fi.suffix().toLower() == "msh")
{
FileIO::Legacy::MeshIO meshIO;
meshIO.setMesh(mesh);
meshIO.writeToFile(fileName.toStdString().c_str());
}
LastSavedFileDirectory::setDir(fileName);
return 1;
}
else
OGSError::box("No file name entered.");
}
return 0;
}
int main (int argc, char* argv[])
{
LOGOG_INITIALIZE();
logog::Cout* logog_cout (new logog::Cout);
BaseLib::LogogSimpleFormatter *custom_format (new BaseLib::LogogSimpleFormatter);
logog_cout->SetFormatter(*custom_format);
TCLAP::CmdLine cmd("Remove mesh elements.", ' ', "0.1");
// Bounding box params
TCLAP::ValueArg<double> zLargeArg("", "z-max", "largest allowed extent in z-dimension",
false, std::numeric_limits<double>::max(), "value");
cmd.add(zLargeArg);
TCLAP::ValueArg<double> zSmallArg("", "z-min", "smallest allowed extent in z-dimension",
false, -1 * std::numeric_limits<double>::max(), "value");
cmd.add(zSmallArg);
TCLAP::ValueArg<double> yLargeArg("", "y-max", "largest allowed extent in y-dimension",
false, std::numeric_limits<double>::max(), "value");
cmd.add(yLargeArg);
TCLAP::ValueArg<double> ySmallArg("", "y-min", "smallest allowed extent in y-dimension",
false, -1 * std::numeric_limits<double>::max(), "value");
cmd.add(ySmallArg);
TCLAP::ValueArg<double> xLargeArg("", "x-max", "largest allowed extent in x-dimension",
false, std::numeric_limits<double>::max(), "value");
cmd.add(xLargeArg);
TCLAP::ValueArg<double> xSmallArg("", "x-min", "smallest allowed extent in x-dimension",
false, -1 * std::numeric_limits<double>::max(), "value");
cmd.add(xSmallArg);
// Non-bounding-box params
TCLAP::SwitchArg zveArg("z", "zero-volume", "remove zero volume elements", false);
cmd.add(zveArg);
TCLAP::MultiArg<std::string> eleTypeArg("t", "element-type",
"element type to be removed", false, "element type");
cmd.add(eleTypeArg);
TCLAP::MultiArg<unsigned> matIDArg("m", "material-id",
"material id", false, "material id");
cmd.add(matIDArg);
// I/O params
TCLAP::ValueArg<std::string> mesh_out("o", "mesh-output-file",
"the name of the file the mesh will be written to", true,
"", "file name of output mesh");
cmd.add(mesh_out);
TCLAP::ValueArg<std::string> mesh_in("i", "mesh-input-file",
"the name of the file containing the input mesh", true,
"", "file name of input mesh");
cmd.add(mesh_in);
cmd.parse(argc, argv);
MeshLib::Mesh const*const mesh (FileIO::readMeshFromFile(mesh_in.getValue()));
INFO("Mesh read: %d nodes, %d elements.", mesh->getNNodes(), mesh->getNElements());
MeshLib::ElementSearch ex(*mesh);
// search elements IDs to be removed
if (zveArg.isSet()) {
const std::size_t n_removed_elements = ex.searchByContent();
INFO("%d zero volume elements found.", n_removed_elements);
}
if (eleTypeArg.isSet()) {
const std::vector<std::string> eleTypeNames = eleTypeArg.getValue();
for (auto typeName : eleTypeNames) {
const MeshLib::MeshElemType type = MeshLib::String2MeshElemType(typeName);
if (type == MeshLib::MeshElemType::INVALID) continue;
const std::size_t n_removed_elements = ex.searchByElementType(type);
INFO("%d %s elements found.", n_removed_elements, typeName.c_str());
}
}
if (matIDArg.isSet()) {
const std::vector<unsigned> vec_matID = matIDArg.getValue();
for (auto matID : vec_matID) {
const std::size_t n_removed_elements = ex.searchByMaterialID(matID);
INFO("%d elements with material ID %d found.", n_removed_elements, matID);
}
}
if (xSmallArg.isSet() || xLargeArg.isSet() ||
ySmallArg.isSet() || yLargeArg.isSet() ||
zSmallArg.isSet() || zLargeArg.isSet())
{
bool aabb_error (false);
if (xSmallArg.getValue() >= xLargeArg.getValue())
{
ERR ("Minimum x-extent larger than maximum x-extent.");
aabb_error = true;
}
if (ySmallArg.getValue() >= yLargeArg.getValue())
{
ERR ("Minimum y-extent larger than maximum y-extent.");
aabb_error = true;
}
if (zSmallArg.getValue() >= zLargeArg.getValue())
{
ERR ("Minimum z-extent larger than maximum z-extent.");
aabb_error = true;
}
if (aabb_error)
return 1;
std::array<MathLib::Point3d, 2> extent({{
MathLib::Point3d(std::array<double,3>{{xSmallArg.getValue(),
ySmallArg.getValue(), zSmallArg.getValue()}}),
MathLib::Point3d(std::array<double,3>{{xLargeArg.getValue(),
yLargeArg.getValue(), zLargeArg.getValue()}})}});
const std::size_t n_removed_elements = ex.searchByBoundingBox(
GeoLib::AABB(extent.begin(), extent.end()));
INFO("%d elements found.", n_removed_elements);
}
// remove the elements and create a new mesh object.
MeshLib::Mesh const*const new_mesh = MeshLib::removeElements(*mesh, ex.getSearchedElementIDs(), mesh->getName());
// write into a file
FileIO::Legacy::MeshIO meshIO;
meshIO.setMesh(new_mesh);
meshIO.writeToFile(mesh_out.getValue());
delete custom_format;
delete logog_cout;
LOGOG_SHUTDOWN();
return 0;
}
int main (int argc, char* argv[])
{
LOGOG_INITIALIZE();
logog::Cout* logog_cout (new logog::Cout);
BaseLib::LogogSimpleFormatter *custom_format (new BaseLib::LogogSimpleFormatter);
logog_cout->SetFormatter(*custom_format);
TCLAP::CmdLine cmd("Append line elements into a mesh.", ' ', "0.1");
TCLAP::ValueArg<std::string> mesh_in("i", "mesh-input-file",
"the name of the file containing the input mesh", true,
"", "file name of input mesh");
cmd.add(mesh_in);
TCLAP::ValueArg<std::string> mesh_out("o", "mesh-output-file",
"the name of the file the mesh will be written to", true,
"", "file name of output mesh");
cmd.add(mesh_out);
TCLAP::ValueArg<std::string> geoFileArg("g", "geo-file",
"the name of the geometry file which contains polylines", true, "", "the name of the geometry file");
cmd.add(geoFileArg);
// parse arguments
cmd.parse(argc, argv);
// read GEO objects
GeoLib::GEOObjects geo_objs;
FileIO::BoostXmlGmlInterface xml(geo_objs);
xml.readFile(geoFileArg.getValue());
std::vector<std::string> geo_names;
geo_objs.getGeometryNames (geo_names);
if (geo_names.empty ())
{
std::cout << "no geometries found" << std::endl;
return -1;
}
const GeoLib::PolylineVec* ply_vec (geo_objs.getPolylineVecObj(geo_names[0]));
if (!ply_vec)
{
std::cout << "could not found polylines" << std::endl;
return -1;
}
// read a mesh
MeshLib::Mesh const*const mesh (FileIO::readMeshFromFile(mesh_in.getValue()));
if (!mesh)
{
ERR("Mesh file %s not found", mesh_in.getValue().c_str());
return 1;
}
INFO("Mesh read: %d nodes, %d elements.", mesh->getNNodes(), mesh->getNElements());
// add line elements
std::unique_ptr<MeshLib::Mesh> new_mesh =
MeshGeoToolsLib::appendLinesAlongPolylines(*mesh, *ply_vec);
INFO("Mesh created: %d nodes, %d elements.", new_mesh->getNNodes(), new_mesh->getNElements());
// write into a file
FileIO::Legacy::MeshIO meshIO;
meshIO.setMesh(new_mesh.get());
meshIO.writeToFile(mesh_out.getValue());
delete custom_format;
delete logog_cout;
LOGOG_SHUTDOWN();
return 1;
}
int main (int argc, char* argv[])
{
LOGOG_INITIALIZE();
logog::Cout* logog_cout (new logog::Cout);
BaseLib::LogogSimpleFormatter *custom_format (new BaseLib::LogogSimpleFormatter);
logog_cout->SetFormatter(*custom_format);
TCLAP::CmdLine cmd("Remove mesh elements.", ' ', "0.1");
TCLAP::ValueArg<std::string> mesh_in("i", "mesh-input-file",
"the name of the file containing the input mesh", true,
"", "file name of input mesh");
cmd.add(mesh_in);
TCLAP::ValueArg<std::string> mesh_out("o", "mesh-output-file",
"the name of the file the mesh will be written to", true,
"", "file name of output mesh");
cmd.add(mesh_out);
TCLAP::SwitchArg zveArg("z", "zero-volume", "remove zero volume elements", false);
cmd.add(zveArg);
TCLAP::MultiArg<std::string> eleTypeArg("t", "element-type",
"element type to be removed", false, "element type");
cmd.add(eleTypeArg);
TCLAP::MultiArg<unsigned> matIDArg("m", "material-id",
"material id", false, "material id");
cmd.add(matIDArg);
cmd.parse(argc, argv);
MeshLib::Mesh* mesh (FileIO::readMeshFromFile(mesh_in.getValue()));
INFO("Mesh read: %d nodes, %d elements.", mesh->getNNodes(), mesh->getNElements());
// search elements IDs to be removed
std::vector<std::size_t> vec_elementIDs_removed;
if (zveArg.isSet()) {
std::vector<std::size_t> vec_matched = searchByZeroContent(mesh->getElements());
updateUnion(vec_matched, vec_elementIDs_removed);
INFO("%d zero volume elements found.", vec_matched.size());
}
if (eleTypeArg.isSet()) {
std::vector<std::string> eleTypeNames = eleTypeArg.getValue();
for (auto typeName : eleTypeNames) {
MeshElemType type = String2MeshElemType(typeName);
if (type == MeshElemType::INVALID) continue;
std::vector<std::size_t> vec_matched = searchByElementType(mesh->getElements(), type);
updateUnion(vec_matched, vec_elementIDs_removed);
INFO("%d %s elements found.", vec_matched.size(), typeName.c_str());
}
}
if (matIDArg.isSet()) {
std::vector<unsigned> vec_matID = matIDArg.getValue();
for (auto matID : vec_matID) {
std::vector<std::size_t> vec_matched = searchByMaterialID(mesh->getElements(), matID);
updateUnion(vec_matched, vec_elementIDs_removed);
INFO("%d elements with material ID %d found.", vec_matched.size(), matID);
}
}
// remove the elements
INFO("Removing total %d elements...", vec_elementIDs_removed.size());
std::vector<MeshLib::Element*> tmp_eles = excludeElements(mesh->getElements(), vec_elementIDs_removed);
INFO("%d elements remained.", tmp_eles.size());
std::vector<MeshLib::Node*> new_nodes;
std::vector<MeshLib::Element*> new_eles;
copyNodesElements(mesh->getNodes(), tmp_eles, new_nodes, new_eles);
// create a new mesh object. Unsued nodes are removed while construction
MeshLib::Mesh* new_mesh(new MeshLib::Mesh(mesh->getName(), new_nodes, new_eles));
// write into a file
FileIO::Legacy::MeshIO meshIO;
meshIO.setMesh(new_mesh);
meshIO.writeToFile(mesh_out.getValue());
delete custom_format;
delete logog_cout;
LOGOG_SHUTDOWN();
return 0;
}