void Database::_WriteBlock(Item towrite, uint64_t blockpos) {
backing.seekg(blockpos);
backing.seekp(blockpos);
uint64_t blkhdrs[4];
if (backing.eof()) {
blkhdrs[0] = 0;
blkhdrs[1] = towrite.itemsize;
blkhdrs[2] = towrite.itemsize;
blkhdrs[3] = towrite.itemsize + (sizeof(uint64_t)*4) + 1;
backing.write(0, 1);
backing.write((char*)&blkhdrs, sizeof(uint64_t)*4);
backing.write(towrite.item, towrite.itemsize);
backing.flush();
} else {
_GetLock(blockpos, true);
backing.read((char*)blkhdrs, sizeof(uint64_t)*4);
if (towrite.itemsize + 1 + (sizeof(uint64_t)*4) <= blkhdrs[3]) {
//Block large enough or non-existent block
backing.write(0, 1);
blkhdrs[0] = 0;
blkhdrs[1] = towrite.itemsize;
blkhdrs[2] = towrite.itemsize;
//Keep blkhdrs[3]
backing.write((char*)&blkhdrs, sizeof(uint64_t)*4);
backing.write(towrite.item, towrite.itemsize);
backing.flush();
_ReleaseLock(blockpos, true);
} else {
//Have to continue to a new block, allocate or reuse
std::streampos currentpos = backing.tellp();
backing.seekp(0, std::ios::end);
std::streampos endpos = backing.tellp();
backing.seekp(currentpos, std::ios::beg);
blkhdrs[0] = (uint64_t) endpos;
//Keep blkhdrs[1]
blkhdrs[2] = towrite.itemsize;
//Keep blkhdrs[3]
uint64_t blockcancontain = blkhdrs[3] - ((sizeof(uint64_t)*4) + 1);
backing.write(0, 1);
backing.write((char*)&blkhdrs, sizeof(uint64_t)*4);
backing.write(towrite.item, blockcancontain);
backing.flush();
_ReleaseLock(blockpos, true);
//Continue to next block!
Item process;
process.itemsize = towrite.itemsize-blockcancontain;
process.item = towrite.item+blockcancontain;
_WriteBlock(process, blockpos);
}
}
}
Block getWordBlock(std::string word, std::fstream& f, bool createIfReauired = false) {
seekRW(f, 0);
BlockOffset currentOffset = 0;
Block b {readBlockFromFile(f)};
for(auto c : word) {
unsigned int i = char2int(c);
if (b.offsets[i] == 0 ) {
if (!createIfReauired) {
b.data=0;
return b;
}
BlockOffset off = f.tellp();
Block newBlock {};
seekRW(f, 0, f.end);
BlockOffset newCurrent = b.offsets[i] = writeBlockToFile(newBlock, f);
seekRW(f, off);
writeBlockToFile(b, f);
seekRW(f, newCurrent);
currentOffset = newCurrent;
b = newBlock;
} else {
currentOffset = b.offsets[i];
seekRW(f, currentOffset);
b = readBlockFromFile(f);
}
}
return b;
}
void Folder::writeData(std::fstream &file, BSAULong fileNamesLength) const
{
m_OffsetWrite = static_cast<BSAULong>(file.tellp()) + fileNamesLength;
writeBString(file, getFullPath());
for (std::vector<File::Ptr>::const_iterator iter = m_Files.begin();
iter != m_Files.end(); ++iter) {
(*iter)->writeHeader(file);
}
}
/*! \brief Close and truncate the file, and update digest
* Truncation is needed to remove any detritus from previously-saved states.
*/
void resultsfile::finishwithfile(std::fstream& file)
{
std::streampos length = file.tellp();
// close and truncate file
file.close();
truncate(length);
// re-open and update digest
file.open(fname.c_str(), std::ios::in);
filedigest.process(file);
}
BlockOffset writeBlockToFile(Block b, std::fstream& f) {
BlockOffset off = f.tellp();
f.write(reinterpret_cast<char *>(&b.data), sizeof(b.data));
for(auto& o : b.offsets) {
f.write(reinterpret_cast<char *>(&o), sizeof(o));
}
f.seekp(off, f.beg);
return off;
}
/*! \brief If this is the first time, write the header
* \note This method also updates the write position so that the header is not
* overwritten on the next write.
*/
void resultsfile::writeheaderifneeded(std::fstream& file)
{
if (!headerwritten)
{
writeheader(file);
// update flag
headerwritten = true;
// update file-write position
fileptr = file.tellp();
}
}
void IndexDataStructure::writeAt(std::fstream & _output_file, std::streampos _position)
{
// remember the write file position
std::streampos w_pos = _output_file.tellp();
// go to asked write position
_output_file.seekp(_position);
writeToNext(_output_file);
// restore original write position
_output_file.seekp(w_pos);
}
int serialize(linked_list<T>& list, std::fstream& out) {
if(!out.is_open())
throw serialize_exception();
serialize(LINKEDLIST_SERIAL_ID, out);
int byte_count_pos = out.tellp();
out.seekp(sizeof(int), std::ios::cur);
int byte_count = 0;
byte_count += serialize(list.list_size, out);
for(typename linked_list<T>::link* current = (list.head)->next; current != NULL; current = current->next)
byte_count += serialize(current->element, out);
int end_pos = out.tellp();
out.seekp(byte_count_pos);
serialize(byte_count, out);
out.seekp(end_pos);
return byte_count + sizeof(int) + sizeof(long); // content + header
}
void IndexDataStructure::writeToNext(std::fstream & _output_file)
{
m_is_indexed = true;
m_index_position = _output_file.tellp();
_output_file.write((char *)(&m_count), sizeof(m_count));
_output_file.write((char *)(m_keys), sizeof(m_keys[0]) * m_max_count);
_output_file.write((char *)(m_addresses), sizeof(m_addresses[0]) * m_max_count);
_output_file.write((char *)(&m_next_sibling_address), sizeof(m_next_sibling_address));
// skip free block space
_output_file.seekp(m_block_size - m_real_data_size, _output_file.cur);
}
void resultsfile::checkformodifications(std::fstream& file)
{
assert(file.good());
trace << "DEBUG (resultsfile): checking file for modifications." << std::endl;
// check for user modifications
sha curdigest;
file.seekg(0);
curdigest.process(file);
// reset file
file.clear();
if (curdigest == filedigest)
file.seekp(fileptr);
else
{
cerr << "NOTICE: file modifications found - appending." << std::endl;
// set current write position to end-of-file
file.seekp(0, std::ios_base::end);
fileptr = file.tellp();
}
}
