// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void Threshold::dataCheck(bool preflight, size_t voxels, size_t fields, size_t ensembles)
{
setErrorCondition(0);
std::stringstream ss;
VoxelDataContainer* m = getVoxelDataContainer();
if(m_SelectedCellArrayName.empty() == true)
{
setErrorCondition(-11000);
ss << "An array from the Voxel Data Container must be selected.";
addErrorMessage(getHumanLabel(),ss.str(),getErrorCondition());
}
else
{
m_RawImageDataArrayName=m_SelectedCellArrayName;
GET_PREREQ_DATA(m, DREAM3D, CellData, RawImageData, ss, -300, ImageProcessing::DefaultPixelType, ImageProcessing::DefaultArrayType, voxels, 1)
if(m_OverwriteArray)
{
}
else
{
CREATE_NON_PREREQ_DATA(m, DREAM3D, CellData, ProcessedImageData, ss, ImageProcessing::DefaultPixelType, ImageProcessing::DefaultArrayType, 0, voxels, 1)
m->renameCellData(m_ProcessedImageDataArrayName, m_NewCellArrayName);
}
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void DxReader::dataCheck(bool preflight, size_t voxels, size_t fields, size_t ensembles)
{
setErrorCondition(0);
std::stringstream ss;
VoxelDataContainer* m = getVoxelDataContainer();
if (getInputFile().empty() == true)
{
ss << ClassName() << " needs the Input File Set and it was not.";
setErrorCondition(-387);
addErrorMessage(getHumanLabel(), ss.str(), getErrorCondition());
}
else if (MXAFileInfo::exists(getInputFile()) == false)
{
ss << "The input file does not exist.";
setErrorCondition(-388);
addErrorMessage(getHumanLabel(), ss.str(), getErrorCondition());
}
CREATE_NON_PREREQ_DATA(m, DREAM3D, CellData, GrainIds, ss, int32_t, Int32ArrayType, 0, voxels, 1)
m->setResolution(m_Resolution.x, m_Resolution.y, m_Resolution.z);
m->setOrigin(m_Origin.x, m_Origin.y, m_Origin.z);
if (m_InStream.is_open() == true)
{
m_InStream.close();
}
// We need to read the header of the input file to get the dimensions
m_InStream.open(getInputFile().c_str(), std::ios_base::binary);
if(!m_InStream)
{
ss.clear();
ss << " Runtime Error. The input file '" << getInputFile() << "' could not be"
<< " opened for reading. Do you have access to this file?";
setErrorCondition(-49800);
addErrorMessage(getHumanLabel(), ss.str(), getErrorCondition());
return;
}
int error = readHeader();
m_InStream.close();
if (error < 0)
{
setErrorCondition(error);
ss.clear();
ss << "Error occurred trying to parse the dimensions from the input file. Is the input file a Dx file?";
addErrorMessage(getHumanLabel(), ss.str(), -11000);
}
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindNeighbors::dataCheck(bool preflight, size_t voxels, size_t fields, size_t ensembles)
{
setErrorCondition(0);
std::stringstream ss;
VoxelDataContainer* m = getVoxelDataContainer();
// Cell Data
GET_PREREQ_DATA( m, DREAM3D, CellData, GrainIds, ss, -300, int32_t, Int32ArrayType, voxels, 1)
CREATE_NON_PREREQ_DATA(m, DREAM3D, CellData, SurfaceVoxels, ss, int8_t, Int8ArrayType, 0, voxels, 1)
// Field Data
// Do this whole block FIRST otherwise the side effect is that a call to m->getNumFieldTuples will = 0
// because we are just creating an empty NeighborList object.
// Now we are going to get a "Pointer" to the NeighborList object out of the DataContainer
m_NeighborList = NeighborList<int>::SafeObjectDownCast<IDataArray*, NeighborList<int>* >
(m->getFieldData(m_NeighborListArrayName).get());
if(m_NeighborList == NULL)
{
NeighborList<int>::Pointer neighborlistPtr = NeighborList<int>::New();
neighborlistPtr->SetName(m_NeighborListArrayName);
neighborlistPtr->Resize(fields);
neighborlistPtr->setNumNeighborsArrayName(getNumNeighborsArrayName());
m->addFieldData(m_NeighborListArrayName, neighborlistPtr);
if (neighborlistPtr.get() == NULL) {
ss << "NeighborLists Array Not Initialized at Beginning of FindNeighbors Filter" << std::endl;
setErrorCondition(-308);
}
m_NeighborList = NeighborList<int>::SafeObjectDownCast<IDataArray*, NeighborList<int>* >
(m->getFieldData(m_NeighborListArrayName).get());
CreatedArrayHelpIndexEntry::Pointer e = CreatedArrayHelpIndexEntry::New();
e->setFilterName(this->getNameOfClass());
e->setFilterHumanLabel(this->getHumanLabel());
e->setFilterGroup(this->getGroupName());
e->setFilterSubGroup(this->getSubGroupName());
e->setArrayDefaultName(m_NeighborListArrayName);
e->setArrayGroup("Field");
e->setArrayNumComponents(0);
e->setArrayType("NeighborList");
addCreatedArrayHelpIndexEntry(e);
}
// And we do the same for the SharedSurfaceArea list
m_SharedSurfaceAreaList = NeighborList<float>::SafeObjectDownCast<IDataArray*, NeighborList<float>*>
(m->getFieldData(m_SharedSurfaceAreaListArrayName).get());
if(m_SharedSurfaceAreaList == NULL)
{
NeighborList<float>::Pointer sharedSurfaceAreaListPtr = NeighborList<float>::New();
sharedSurfaceAreaListPtr->SetName(m_SharedSurfaceAreaListArrayName);
sharedSurfaceAreaListPtr->Resize(fields);
sharedSurfaceAreaListPtr->setNumNeighborsArrayName(getNumNeighborsArrayName());
m->addFieldData(m_SharedSurfaceAreaListArrayName, sharedSurfaceAreaListPtr);
if (sharedSurfaceAreaListPtr.get() == NULL)
{
ss.str("");
ss << "SurfaceAreaLists Array Not Initialized correctly at Beginning of FindNeighbors Filter" << std::endl;
setErrorCondition(-308);
addErrorMessage(getHumanLabel(), ss.str(), -308);
}
m_SharedSurfaceAreaList = NeighborList<float>::SafeObjectDownCast<IDataArray*, NeighborList<float>*>
(m->getFieldData(m_SharedSurfaceAreaListArrayName).get());
CreatedArrayHelpIndexEntry::Pointer e = CreatedArrayHelpIndexEntry::New();
e->setFilterName(this->getNameOfClass());
e->setFilterHumanLabel(this->getHumanLabel());
e->setFilterGroup(this->getGroupName());
e->setFilterSubGroup(this->getSubGroupName());
e->setArrayDefaultName(m_SharedSurfaceAreaListArrayName);
e->setArrayGroup("Field");
e->setArrayNumComponents(0);
e->setArrayType("SurfaceAreaLists");
addCreatedArrayHelpIndexEntry(e);
}
CREATE_NON_PREREQ_DATA(m, DREAM3D, FieldData, SurfaceFields, ss, bool, BoolArrayType, false, fields, 1)
CREATE_NON_PREREQ_DATA(m, DREAM3D, FieldData, NumNeighbors, ss, int32_t, Int32ArrayType, 0, fields, 1)
}
