//display the ori/pos arrays for this animal
void AnimalClass::display()
{
IOFormat CommaInitFmt(StreamPrecision, DontAlignCols, ", ", ", ", "", "", " << ", ";");
unsigned numChromosomePair = G.get_num_chrom();
for(unsigned i=0;i<numChromosomePair;i++){
cout<<"These are positions on chromosome "<<i<<" for pat"<<endl;
cout<< GenomePat[i].pos.format(CommaInitFmt)<<endl;
cout<<"These are origins on chromosome "<<i<<" for pat"<<endl;
cout<< GenomePat[i].ori.format(CommaInitFmt)<<endl;
cout<<"These are positions on chromosome "<<i<<" for mat"<<endl;
cout<< GenomeMat[i].pos.format(CommaInitFmt)<<endl;
cout<<"These are origins on chromosome "<<i<<" for mat"<<endl;
cout<< GenomeMat[i].ori.format(CommaInitFmt)<<endl;
}
};
void Word2Vec::save_word2vec(string filename, const RMatrixXf& data, bool binary)
{
IOFormat CommaInitFmt(StreamPrecision, DontAlignCols);
if(binary)
{
std::ofstream out(filename, std::ios::binary);
char blank = ' ';
char enter = '\n';
int size = sizeof(char);
int r_size = data.cols() * sizeof(RMatrixXf::Scalar);
std::string head = std::string(std::to_string(vocab.size()) + " " + std::to_string(data.cols()) + "\n");
out.write(head.c_str(),head.length());
RMatrixXf::Index r = data.rows();
RMatrixXf::Index c = data.cols();
out.write((char*) &r, sizeof(RMatrixXf::Index));
out.write(&blank, size);
out.write((char*) &c, sizeof(RMatrixXf::Index));
out.write(&enter, size);
for(auto v: vocab)
{
out.write(v->text.c_str(), v->text.size());
out.write(&blank, size);
out.write((char*) data.row(v->index).data(), r_size);
out.write(&enter, size);
}
out.close();
}
else
{
ofstream out(filename);
out << data.rows() << " " << data.cols() << std::endl;
for(auto v: vocab)
{
out << v->text << " " << data.row(v->index).format(CommaInitFmt) << endl;;
}
out.close();
}
}
