void run_test_usermeta(const std::string& file_name) {
//
DOT_TITLE("run_test_user_meta",file_name.c_str());
DOT_CLEAR();
//
affx::File5_File* file5=new affx::File5_File();
file5->open(file_name,affx::FILE5_REPLACE);
//
file5->addHeader("key","val");
file5->addHeader("foo","bar");
file5->addHeader("abc","def");
//
for (int i=0;i<file5->getHeaderCount();i++) {
std::string key;
std::string val;
file5->getHeaderByIdx(i,&key,&val);
printf("#%%%s=%s\n",key.c_str(),val.c_str());
}
//
file5->close();
delete file5;
//
DOT_PRINT();
DOT_OK();
}
void run_test_usermeta_big(const std::string& file_name) {
//
DOT_TITLE("run_test_usermeta_big",file_name.c_str());
DOT_CLEAR();
//
affx::File5_File* file5=new affx::File5_File();
file5->open(file_name,affx::FILE5_REPLACE);
//
for (int i=0;i<1000;i++) {
char key_buf[32];
sprintf(key_buf,"key%05d",i);
char val_buf[32];
sprintf(val_buf,"val%05d",i);
file5->addHeader(key_buf,val_buf);
}
//
for (int i=0;i<file5->getHeaderCount();i++) {
std::string key;
std::string val;
file5->getHeaderByIdx(i,&key,&val);
if ((i%100)==0) {
printf("%4d : #%%%s=%s\n",i,key.c_str(),val.c_str());
}
}
//
file5->close();
delete file5;
//
DOT_PRINT();
DOT_OK();
}
void run_test_benchmark_write(const std::string& file_name,int benchmark_cnt)
{
printf("FILE5_CHUNKSIZE = %5d\n", FILE5_CHUNKSIZE);
printf("FILE5_DEFAULT_COMPRESS = %5d\n", FILE5_DEFAULT_COMPRESS);
//
DOT_TITLE("run_test_benchmark_write",file_name.c_str());
DOT_CLEAR();
affx::File5_File* file5=new affx::File5_File();
file5->open(file_name,affx::FILE5_REPLACE);
affx::File5_Tsv* tsv5=file5->openTsv("benchmark",affx::FILE5_REPLACE);
for (int cidx=0;cidx<BENCHMARK_COL_CNT;cidx++) {
char buf[100];
sprintf(buf,"col-%04d",cidx);
tsv5->defineColumn(0,cidx,buf,affx::FILE5_DTYPE_DOUBLE);
}
//
int cnt=0;
while (cnt<benchmark_cnt) {
for (int cidx=0;cidx<BENCHMARK_COL_CNT;cidx++) {
tsv5->set_d(0,cidx,(cnt++)+0.123456);
}
tsv5->writeLevel(0);
}
//
tsv5->close();
delete tsv5;
file5->close();
delete file5;
}
void run_test_file(const std::string& file_name) {
int should_be_zero;
//
DOT_TITLE("run_test_file",file_name.c_str());
DOT_CLEAR();
//
affx::File5_File* file5=new affx::File5_File();
// should be ok
DOT_PRINT();
unlink(file_name.c_str());
file5->open(file_name,affx::FILE5_CREATE);
file5->close();
// should fail as file is there.
DOT_PRINT();
should_be_zero=0;
try {
file5->open(file_name,affx::FILE5_OPEN);
should_be_zero=0; // error!
}
catch (...) {
// ignore
}
FILE5_ASSERT(should_be_zero==0);
//
file5->close();
// should be ok
DOT_PRINT();
file5->open(file_name,affx::FILE5_OPEN);
file5->close();
//
DOT_PRINT();
file5->open(file_name,affx::FILE5_OPEN_RO);
//
file5->close();
// it should be safe to call close twice...
file5->flush();
file5->close();
// ...or more!
file5->close();
// should be ok.
/*
DOT_PRINT();
unlink(file_name.c_str());
file5->open(file_name,affx::FILE5_OPEN);
file5->close();
*/
//
delete file5;
//
DOT_OK();
}
void dot_all_tog (){
int i;
if (! check_dot_all){
DOT_SET(0, 0x7F); DOT_SET(1, 0x7F); DOT_SET(2, 0x7F); DOT_SET(3, 0x7F); DOT_SET(4, 0x7F);
for (i=0 ; i <35; i++)
gtk_toggle_button_set_active(GTK_TOGGLE_BUTTON(dot_handle[i]), TRUE);
check_dot1 = check_dot2 = check_dot3 = check_dot4 = check_dot5 = \
check_dot6 = check_dot7 = check_dot8 = check_dot9 = check_dot10 = \
check_dot11 = check_dot12 = check_dot13 = check_dot14 = check_dot15 = \
check_dot16 = check_dot17 = check_dot18 = check_dot19 = check_dot20 = \
check_dot21 = check_dot22 = check_dot23 = check_dot24 = check_dot25 = \
check_dot26 = check_dot27 = check_dot28 = check_dot29 = check_dot30 = \
check_dot31 = check_dot32 = check_dot33 = check_dot34 = check_dot35 = 1;
check_dot_all =1;
}
else { DOT_CLEAR(0, 0x7F); DOT_CLEAR(1, 0x7F); DOT_CLEAR(2, 0x7F); \
DOT_CLEAR(3, 0x7F); DOT_CLEAR(4, 0x7F);
for (i=0 ; i <35; i++)
gtk_toggle_button_set_active(GTK_TOGGLE_BUTTON(dot_handle[i]), FALSE);
check_dot1 = check_dot2 = check_dot3 = check_dot4 = check_dot5 = \
check_dot6 = check_dot7 = check_dot8 = check_dot9 = check_dot10 = \
check_dot11 = check_dot12 = check_dot13 = check_dot14 = check_dot15 = \
check_dot16 = check_dot17 = check_dot18 = check_dot19 = check_dot20 = \
check_dot21 = check_dot22 = check_dot23 = check_dot24 = check_dot25 = \
check_dot26 = check_dot27 = check_dot28 = check_dot29 = check_dot30 = \
check_dot31 = check_dot32 = check_dot33 = check_dot34 = check_dot35 = 0;
check_dot_all =0;
}
}
void run_test_vector_1(const std::string& file_name) {
//
DOT_TITLE("run_test_matrix",file_name.c_str());
DOT_CLEAR();
run_test_vector_1_w(file_name+"-int", affx::FILE5_DTYPE_INT);
run_test_vector_1_r(file_name+"-int", affx::FILE5_DTYPE_INT);
//
run_test_vector_1_w(file_name+"-short", affx::FILE5_DTYPE_SHORT);
run_test_vector_1_r(file_name+"-short", affx::FILE5_DTYPE_SHORT);
//
run_test_vector_1_w(file_name+"-char", affx::FILE5_DTYPE_CHAR);
run_test_vector_1_r(file_name+"-char", affx::FILE5_DTYPE_CHAR);
}
void run_test_tsv_write(const std::string& file_name)
{
DOT_TITLE("run_test_tsv_write",file_name.c_str());
DOT_CLEAR();
affx::File5_File* file5=new affx::File5_File();
file5->open(file_name,affx::FILE5_REPLACE);
affx::File5_Tsv* tsv5=file5->openTsv("tsv",affx::FILE5_REPLACE);
std::string col_name="test-column";
tsv5->defineColumn(0,0,col_name,affx::FILE5_DTYPE_INT);
// check the types
FILE5_ASSERT(tsv5->getColumnDtype(0,0)==affx::FILE5_DTYPE_INT);
FILE5_ASSERT(tsv5->getColumnDtype(0,10)==affx::FILE5_DTYPE_UNKNOWN);
//
FILE5_ASSERT(tsv5->getColumnDtype(0,"test-column")==affx::FILE5_DTYPE_INT);
FILE5_ASSERT(tsv5->getColumnDtype(0,"noSuchColumn")==affx::FILE5_DTYPE_UNKNOWN);
for (int i=0;i<10;i++) {
// good cases
if (tsv5->set_i(0,0,i)!=affx::FILE5_OK) {
FILE5_ASSERT(0);
}
tsv5->writeLevel(0);
if (tsv5->set_i(0,col_name,i)!=affx::FILE5_OK) {
FILE5_ASSERT(0);
}
tsv5->writeLevel(0);
// bad cases
if (tsv5->set_i(0,-1,i)==affx::FILE5_OK) {
FILE5_ASSERT(0);
}
if (tsv5->set_i(0,"bad_col",i)==affx::FILE5_OK) {
FILE5_ASSERT(0);
}
if (tsv5->set_i(9,col_name,i)==affx::FILE5_OK) {
FILE5_ASSERT(0);
}
}
//
tsv5->close();
delete tsv5;
file5->close();
delete file5;
}
void run_test_tsv_delete(const std::string& file_name)
{
DOT_TITLE("run_test_tsv_delete",file_name.c_str());
DOT_CLEAR();
affx::File5_File* file5=new affx::File5_File();
file5->open(file_name,affx::FILE5_REPLACE);
// make two tables
run_test_tsv_delete_mk(file5,"tsv-1");
run_test_tsv_delete_mk(file5,"tsv-deleteme");
run_test_tsv_delete_mk(file5,"tsv-2");
//
file5->deleteTsv("tsv-deleteme");
file5->deleteTsv("tsv-doesnotexists");
//
file5->close();
delete file5;
}
void run_test_vec_strlen_1(const std::string& file_base,int strlen)
{
//
char buf[100];
//
sprintf(buf,"%s-%03d",file_base.c_str(),strlen);
std::string file_name=buf;
printf(" file=%s\n",file_name.c_str());
//
DOT_CLEAR();
affx::File5_File* file5=new affx::File5_File();
file5->open(file_name,affx::FILE5_REPLACE);
affx::File5_Tsv* tsv5=file5->openTsv("tsv",affx::FILE5_REPLACE);
tsv5->defineColumn(0,0,"string",affx::FILE5_DTYPE_STRING,strlen);
int val=0;
for (int i=0;i<100000;i++) {
// psudo-random
// val=val*23*val+val+10;
// sequental
val++;
sprintf(buf,"%u%u",val,val);
// fix the length at 10.
buf[11]=0;
tsv5->set_string(0,0,buf);
tsv5->writeLevel(0);
}
//
tsv5->close();
delete tsv5;
file5->close();
delete file5;
}
void dot34_tog(){
if (! check_dot34)
{ DOT_SET(3, 0x01); check_dot34 = 1; }
else { DOT_CLEAR(3, 0x01); check_dot34 = 0; }
}
void dot32_tog(){
if (! check_dot32)
{ DOT_SET(1, 0x01); check_dot32 = 1; }
else { DOT_CLEAR(1, 0x01); check_dot32 = 0; }
}
void dot30_tog(){
if (! check_dot30)
{ DOT_SET(4, 0x02); check_dot30 = 1; }
else { DOT_CLEAR(4, 0x02); check_dot30 = 0; }
}
void dot28_tog(){
if (! check_dot28)
{ DOT_SET(2, 0x02); check_dot28 = 1; }
else { DOT_CLEAR(2, 0x02); check_dot28 = 0; }
}
/************************* ROW6 ************************/
void dot26_tog(){
if (! check_dot26)
{ DOT_SET(0, 0x02); check_dot26 = 1; }
else { DOT_CLEAR(0, 0x02); check_dot26 = 0; }
}
void dot24_tog(){
if (! check_dot24)
{ DOT_SET(3, 0x04); check_dot24 = 1; }
else { DOT_CLEAR(3, 0x04); check_dot24 = 0; }
}
void dot22_tog(){
if (! check_dot22)
{ DOT_SET(1, 0x04); check_dot22 = 1; }
else { DOT_CLEAR(1, 0x04); check_dot22 = 0; }
}
void dot23_tog(){
if (! check_dot23)
{ DOT_SET(2, 0x04); check_dot23 = 1; }
else { DOT_CLEAR(2, 0x04); check_dot23 = 0; }
}
void dot15_tog(){
if (! check_dot15)
{ DOT_SET(4, 0x10); check_dot15 = 1; }
else { DOT_CLEAR(4, 0x10); check_dot15 = 0; }
}
void dot25_tog(){
if (! check_dot25)
{ DOT_SET(4, 0x04); check_dot25 = 1; }
else { DOT_CLEAR(4, 0x04); check_dot25 = 0; }
}
/************************* ROW4 ************************/
void dot16_tog(){
if (! check_dot16)
{ DOT_SET(0, 0x08); check_dot16 = 1; }
else { DOT_CLEAR(0, 0x08); check_dot16 = 0; }
}
void dot27_tog(){
if (! check_dot27)
{ DOT_SET(1, 0x02); check_dot27 = 1; }
else { DOT_CLEAR(1, 0x02); check_dot27 = 0; }
}
void dot17_tog(){
if (! check_dot17)
{ DOT_SET(1, 0x08); check_dot17 = 1; }
else { DOT_CLEAR(1, 0x08); check_dot17 = 0; }
}
void dot29_tog(){
if (! check_dot29)
{ DOT_SET(3, 0x02); check_dot29 = 1; }
else { DOT_CLEAR(3, 0x02); check_dot29 = 0; }
}
void dot18_tog(){
if (! check_dot18)
{ DOT_SET(2, 0x08); check_dot18 = 1; }
else { DOT_CLEAR(2, 0x08); check_dot18 = 0; }
}
/************************* ROW7 ************************/
void dot31_tog(){
if (! check_dot31)
{ DOT_SET(0, 0x01); check_dot31 = 1; }
else { DOT_CLEAR(0, 0x01); check_dot31 = 0; }
}
void dot19_tog(){
if (! check_dot19)
{ DOT_SET(3, 0x08); check_dot19 = 1; }
else { DOT_CLEAR(3, 0x08); check_dot19 = 0; }
}
void dot33_tog(){
if (! check_dot33)
{ DOT_SET(2, 0x01); check_dot33 = 1; }
else { DOT_CLEAR(2, 0x01); check_dot33 = 0; }
}
void dot20_tog(){
if (! check_dot20)
{ DOT_SET(4, 0x08); check_dot20 = 1; }
else { DOT_CLEAR(4, 0x08); check_dot20 = 0; }
}
void dot35_tog(){
if (! check_dot35)
{ DOT_SET(4, 0x01); check_dot35 = 1; }
else { DOT_CLEAR(4, 0x01); check_dot35 = 0; }
}
/************************* ROW5 ************************/
void dot21_tog(){
if (! check_dot21)
{ DOT_SET(0, 0x04); check_dot21 = 1; }
else { DOT_CLEAR(0, 0x04); check_dot21 = 0; }
}
