double operator()(unsigned int i, unsigned int j) {
double res = 0.0;
switch (d_method) {
case TANIMOTO:
res = 1. - TanimotoSimilarity(*d_obj[i], *d_obj[j]);
break;
case DICE:
res = 1. - DiceSimilarity(*d_obj[i], *d_obj[j]);
break;
default:
throw_value_error("unsupported similarity value");
}
return res;
}
double operator()(unsigned int i,unsigned int j) {
const ExplicitBitVect *bvi,*bvj;
try{
bvi=python::extract<const ExplicitBitVect *>(dp_obj[i]);
bvj=python::extract<const ExplicitBitVect *>(dp_obj[j]);
} catch (...) {
throw_value_error("unable to extract ExplicitBitVect from sequence value");
}
double res=0.0;
switch(d_method){
case TANIMOTO:
res = 1.-TanimotoSimilarity(*bvi,*bvj);
break;
case DICE:
res = 1.-DiceSimilarity(*bvi,*bvj);
break;
default:
throw_value_error("unsupported similarity value");
}
return res;
}
double operator()(unsigned int i, unsigned int j) {
double res = 0.0;
std::pair<unsigned int, unsigned int> idxPair(i, j);
if (dp_cache && dp_cache->count(idxPair) > 0) {
res = (*dp_cache)[idxPair];
} else {
switch (d_method) {
case TANIMOTO:
res = 1. - TanimotoSimilarity(*d_obj[i], *d_obj[j]);
break;
case DICE:
res = 1. - DiceSimilarity(*d_obj[i], *d_obj[j]);
break;
default:
throw_value_error("unsupported similarity value");
}
if (dp_cache) {
(*dp_cache)[idxPair] = res;
}
}
return res;
}
