/*@C
PetscViewerMathematicaGetVector - Retrieve a vector from Mathematica
Input Parameter:
. viewer - The Mathematica viewer
Output Parameter:
. v - The vector
Level: intermediate
.keywords PetscViewer, Mathematica, vector
.seealso VecView(), PetscViewerMathematicaPutVector()
@*/
PetscErrorCode PetscViewerMathematicaGetVector(PetscViewer viewer, Vec v)
{
PetscViewer_Mathematica *vmath = (PetscViewer_Mathematica*) viewer->data;
MLINK link; /* The link to Mathematica */
char *name;
PetscScalar *mArray,*array;
long mSize;
int n;
PetscErrorCode ierr;
PetscFunctionBegin;
PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID,1);
PetscValidHeaderSpecific(v, VEC_CLASSID,2);
/* Determine the object name */
if (!vmath->objName) name = "vec";
else name = (char*) vmath->objName;
link = vmath->link;
ierr = VecGetLocalSize(v, &n);
CHKERRQ(ierr);
ierr = VecGetArray(v, &array);
CHKERRQ(ierr);
MLPutFunction(link, "EvaluatePacket", 1);
MLPutSymbol(link, name);
MLEndPacket(link);
ierr = PetscViewerMathematicaSkipPackets(viewer, RETURNPKT);
CHKERRQ(ierr);
MLGetRealList(link, &mArray, &mSize);
if (n != mSize) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG, "Incompatible vector sizes %d %d",n,mSize);
ierr = PetscMemcpy(array, mArray, mSize * sizeof(double));
CHKERRQ(ierr);
MLDisownRealList(link, mArray, mSize);
ierr = VecRestoreArray(v, &array);
CHKERRQ(ierr);
PetscFunctionReturn(0);
}
PetscErrorCode PetscViewerMathematicaPutCSRMatrix(PetscViewer viewer, int m, int n, int *i, int *j, PetscReal *a)
{
PetscViewer_Mathematica *vmath = (PetscViewer_Mathematica*) viewer->data;
MLINK link = vmath->link; /* The link to Mathematica */
const char *symbol;
char *name;
PetscBool match;
PetscErrorCode ierr;
PetscFunctionBegin;
/* Determine the object name */
if (!vmath->objName) name = "mat";
else name = (char*) vmath->objName;
/* Make sure Mathematica recognizes sparse matrices */
MLPutFunction(link, "EvaluatePacket", 1);
MLPutFunction(link, "Needs", 1);
MLPutString(link, "LinearAlgebra`CSRMatrix`");
MLEndPacket(link);
/* Skip packets until ReturnPacket */
ierr = PetscViewerMathematicaSkipPackets(viewer, RETURNPKT);
CHKERRQ(ierr);
/* Skip ReturnPacket */
MLNewPacket(link);
/* Send the CSRMatrix object */
MLPutFunction(link, "EvaluatePacket", 1);
MLPutFunction(link, "Set", 2);
MLPutSymbol(link, name);
MLPutFunction(link, "CSRMatrix", 5);
MLPutInteger(link, m);
MLPutInteger(link, n);
MLPutFunction(link, "Plus", 2);
MLPutIntegerList(link, i, m+1);
MLPutInteger(link, 1);
MLPutFunction(link, "Plus", 2);
MLPutIntegerList(link, j, i[m]);
MLPutInteger(link, 1);
MLPutRealList(link, a, i[m]);
MLEndPacket(link);
/* Skip packets until ReturnPacket */
ierr = PetscViewerMathematicaSkipPackets(viewer, RETURNPKT);
CHKERRQ(ierr);
/* Skip ReturnPacket */
MLNewPacket(link);
/* Check that matrix is valid */
MLPutFunction(link, "EvaluatePacket", 1);
MLPutFunction(link, "ValidQ", 1);
MLPutSymbol(link, name);
MLEndPacket(link);
ierr = PetscViewerMathematicaSkipPackets(viewer, RETURNPKT);
CHKERRQ(ierr);
MLGetSymbol(link, &symbol);
ierr = PetscStrcmp("True", (char*) symbol, &match);
CHKERRQ(ierr);
if (!match) {
MLDisownSymbol(link, symbol);
SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB, "Invalid CSR matrix in Mathematica");
}
MLDisownSymbol(link, symbol);
/* Skip ReturnPacket */
MLNewPacket(link);
PetscFunctionReturn(0);
}
void clean_up_ode(){
clean_up_ode_c();
MLPutSymbol(stdlink, "Null");
MLEndPacket(stdlink);
MLFlush(stdlink);
}
void init_A(double* ps, long ps_len, double* opts, long opts_len){
init_a_c(ps, (int*)&ps_len, opts);
MLPutSymbol(stdlink, "Null");
MLEndPacket(stdlink);
MLFlush(stdlink);
}