void CSysMatrix::Initialize(int n_verts, int n_verts_global, int n_var, int n_eqns, array<array<int> > &v2e, array<int> &v2n_e, array<int> &e2v) {
unsigned long iPoint, *row_ptr, *col_ind, *vneighs, index, nnz;
unsigned short iNeigh, nNeigh, Max_nNeigh, iEdge;
nPoint = n_verts; // Assign number of points in the mesh (on processor)
/*--- Don't delete *row_ptr, *col_ind because they are asigned to the Jacobian structure. ---*/
row_ptr = new unsigned long [nPoint+1];
row_ptr[0] = 0;
for (iPoint = 0; iPoint < nPoint; iPoint++)
row_ptr[iPoint+1] = row_ptr[iPoint]+(v2n_e(iPoint)+1); // +1 -> to include diagonal element
nnz = row_ptr[nPoint];
col_ind = new unsigned long [nnz];
Max_nNeigh = 0;
for (iPoint = 0; iPoint < nPoint; iPoint++) {
nNeigh = v2n_e(iPoint);
if (nNeigh > Max_nNeigh) Max_nNeigh = nNeigh;
}
vneighs = new unsigned long [Max_nNeigh+1]; // +1 -> to include diagonal
for (iPoint = 0; iPoint < nPoint; iPoint++) {
nNeigh = v2n_e(iPoint);
for (iNeigh = 0; iNeigh < nNeigh; iNeigh++) {
iEdge = v2e(iPoint)(iNeigh);
if (e2v(iEdge,0) == iPoint) {
vneighs[iNeigh] = e2v(iEdge,1);
}else{
vneighs[iNeigh] = e2v(iEdge,0);
}
}
vneighs[nNeigh] = iPoint;
sort(vneighs,vneighs+nNeigh+1);
index = row_ptr[iPoint];
for (iNeigh = 0; iNeigh <= nNeigh; iNeigh++) {
col_ind[index] = vneighs[iNeigh];
index++;
}
}
/*--- Set the indices in the in the sparce matrix structure ---*/
SetIndexes(n_verts, n_verts_global, n_var, n_eqns, row_ptr, col_ind, nnz);
/*--- Initialization to zero ---*/
SetValZero();
delete[] vneighs;
}
void CSysMatrix::Initialize(unsigned long nPoint, unsigned long nPointDomain,
unsigned short nVar, unsigned short nEqn,
bool EdgeConnect, CGeometry *geometry) {
unsigned long iPoint, *row_ptr, *col_ind, index, nnz, Elem;
unsigned short iNeigh, iElem, iNode, *nNeigh;
vector<unsigned long>::iterator it;
vector<unsigned long> vneighs;
/*--- Don't delete *row_ptr, *col_ind because they are
asigned to the Jacobian structure. ---*/
/*--- Compute the number of neighbors ---*/
nNeigh = new unsigned short [nPoint];
for (iPoint = 0; iPoint < nPoint; iPoint++) {
if (EdgeConnect) {
nNeigh[iPoint] = (geometry->node[iPoint]->GetnPoint()+1); // +1 -> to include diagonal element
}
else {
vneighs.clear();
for(iElem = 0; iElem < geometry->node[iPoint]->GetnElem(); iElem++) {
Elem = geometry->node[iPoint]->GetElem(iElem);
for (iNode = 0; iNode < geometry->elem[Elem]->GetnNodes(); iNode++)
vneighs.push_back(geometry->elem[Elem]->GetNode(iNode));
}
vneighs.push_back(iPoint);
sort(vneighs.begin(), vneighs.end());
it = unique(vneighs.begin(), vneighs.end());
vneighs.resize(it - vneighs.begin());
nNeigh[iPoint] = vneighs.size();
}
}
/*--- Create row_ptr structure, using the number of neighbors ---*/
row_ptr = new unsigned long [nPoint+1];
row_ptr[0] = 0;
for (iPoint = 0; iPoint < nPoint; iPoint++)
row_ptr[iPoint+1] = row_ptr[iPoint] + nNeigh[iPoint];
nnz = row_ptr[nPoint];
/*--- Create col_ind structure ---*/
col_ind = new unsigned long [nnz];
for (iPoint = 0; iPoint < nPoint; iPoint++) {
vneighs.clear();
if (EdgeConnect) {
for (iNeigh = 0; iNeigh < geometry->node[iPoint]->GetnPoint(); iNeigh++)
vneighs.push_back(geometry->node[iPoint]->GetPoint(iNeigh));
vneighs.push_back(iPoint);
}
else {
for(iElem = 0; iElem < geometry->node[iPoint]->GetnElem(); iElem++) {
Elem = geometry->node[iPoint]->GetElem(iElem);
for (iNode = 0; iNode < geometry->elem[Elem]->GetnNodes(); iNode++)
vneighs.push_back(geometry->elem[Elem]->GetNode(iNode));
}
vneighs.push_back(iPoint);
}
sort(vneighs.begin(), vneighs.end());
it = unique(vneighs.begin(), vneighs.end());
vneighs.resize( it - vneighs.begin() );
index = row_ptr[iPoint];
for (iNeigh = 0; iNeigh < vneighs.size(); iNeigh++) {
col_ind[index] = vneighs[iNeigh];
index++;
}
}
/*--- Set the indices in the in the sparce matrix structure, and memory allocation ---*/
SetIndexes(nPoint, nPointDomain, nVar, nEqn, row_ptr, col_ind, nnz);
/*--- Initialization matrix to zero ---*/
SetValZero();
delete [] nNeigh;
}