bool CGridLabThresholdsLadder::TransferDataFromWindow()
{
bool bRtn = m_pData != NULL;
if(bRtn)
{
CLabLocusThreshold LocusLimits;
int nILS = GetNumberCols() - 1;
int nCol;
CLabRFU &rfu(*m_pData->GetRFUladder());
CLabRFU &rfuILS(*m_pData->GetRFUls());
CLabRFU *pRFU = &rfu;
// get defaults and ILS
for(nCol = 0; bRtn && (nCol <= nILS); nCol += nILS)
{
_GetColumn(nCol,&LocusLimits);
// setup defaults
pRFU->SetFractionMaxPeak(
LocusLimits.GetFractionMaxPeak());
pRFU->SetPullupFractionFilter(
LocusLimits.GetPullupFractionFilter());
pRFU->SetStutterThreshold(
LocusLimits.GetStutter());
pRFU->SetAdenylationThreshold(
LocusLimits.GetAdenylation());
// perform validation here
pRFU = &rfuILS;
}
for(nCol = 1; nCol < nILS; nCol++)
{
if(_GetColumn(nCol,&LocusLimits))
{
rfu.SetLocusThreshold(LocusLimits);
}
else
{
bRtn = false;
nCol = nILS; // loop exit
}
}
}
return bRtn;
}
bool CGridLabThresholdsSample::TransferDataFromWindow()
{
CLabLocusThreshold LocusLimits;
bool bRtn =
(m_pData != NULL) && _GetColumn(0,&LocusLimits);
if(bRtn)
{
CLabRFU &rfu(*m_pData->GetRFUsample());
// setup defaults
m_pData->SetHeterozygousImbalanceLimit(
LocusLimits.GetHeterozygousImbalanceLimit());
m_pData->SetMinBoundForHomozygote(
LocusLimits.GetMinBoundForHomozygote());
rfu.SetFractionMaxPeak(
LocusLimits.GetFractionMaxPeak());
rfu.SetPullupFractionFilter(
LocusLimits.GetPullupFractionFilter());
rfu.SetStutterThreshold(
LocusLimits.GetStutter());
rfu.SetPlusStutterThreshold(
LocusLimits.GetPlusStutter());
rfu.SetAdenylationThreshold(
LocusLimits.GetAdenylation());
// Setup Loci
int n = GetNumberCols();
for(int i = 1; i < n; i++)
{
if(_GetColumn(i,&LocusLimits))
{
rfu.SetLocusThreshold(LocusLimits);
}
else
{
bRtn = false;
i = n; // loop exit
}
}
}
return bRtn;
}
DBTYPE DBRowDescriptor::GetColumnType( uint32 index ) const
{
return (DBTYPE)_GetColumn( index )->GetItem( 1 )->AsInt()->value();
}
PyString* DBRowDescriptor::GetColumnName( uint32 index ) const
{
return _GetColumn( index )->GetItem( 0 )->AsString();
}