static void dbiblast_dbname(AjPStr* dbname, const AjPStr oname, const char *suff) { AjPStr suffix = NULL; ajFmtPrintS(&suffix, ".%s", suff); ajStrAssignS(dbname, oname); if(ajStrGetCharFirst(oname)=='@') ajStrCutStart(dbname, 1); if(!ajStrSuffixS(*dbname, suffix)) { ajStrDel(&suffix); return; } ajStrCutEnd(dbname, ajStrGetLen(suffix)); ajStrDel(&suffix); return; }
static void jaspscan_ParseInput(const AjPStr dir, const AjPStr jaspdir, const AjPStr mats, const AjPStr excl, ajuint *recurs, AjPList ret) { ajuint nm = 0; ajuint ne = 0; AjPStr *carr = NULL; AjPStr *earr = NULL; AjPFile inf = NULL; AjPStr line = NULL; AjPStr comm = NULL; AjPStr val = NULL; ajuint i; ajuint j; char c; ajuint rlen = 0; if(*recurs > JASPSCAN_RECURS) ajFatal("Too many recursion levels in matrix list files"); line = ajStrNew(); comm = ajStrNew(); if(mats) { nm = ajArrCommaList(mats,&carr); for(i=0; i < nm; ++i) { if(ajStrGetCharFirst(carr[i]) != '@') ajStrFmtUpper(&carr[i]); if(ajStrMatchC(carr[i],"ALL")) { jaspscan_GetFileList(dir, jaspdir, "*", ret); ajListSortUnique(ret, ajStrVcmp, jaspscan_strdel); } else if(ajStrGetCharFirst(carr[i]) == '@') { ajStrTrimStartC(&carr[i],"@"); inf = ajFileNewInNameS(carr[i]); if(!inf) ajFatal("Cannot open list file %S",carr[i]); while(ajReadlineTrim(inf,&line)) { ajStrRemoveWhite(&line); c = ajStrGetCharFirst(line); if(c == '#' || c== '!') continue; if(ajStrGetLen(comm)) ajStrAppendC(&comm,","); ajStrFmtUpper(&line); ajStrAppendS(&comm,line); } *recurs += 1; jaspscan_ParseInput(dir,jaspdir,comm,NULL,recurs,ret); *recurs -= 1; ajListSortUnique(ret, ajStrVcmp, jaspscan_strdel); ajFileClose(&inf); } else { jaspscan_GetFileList(dir,jaspdir,ajStrGetPtr(carr[i]),ret); ajListSortUnique(ret, ajStrVcmp, jaspscan_strdel); } } for(i=0; i < nm; ++i) ajStrDel(&carr[i]); AJFREE(carr); } if(excl) { ne = ajArrCommaList(excl,&earr); for(i=0; i < ne; ++i) { if(ajStrGetCharFirst(earr[i]) != '@') ajStrFmtUpper(&earr[i]); if(ajStrGetCharFirst(earr[i]) == '@') { ajStrTrimStartC(&earr[i],"@"); inf = ajFileNewInNameS(earr[i]); if(!inf) ajFatal("Cannot open list file %S",earr[i]); while(ajReadlineTrim(inf,&line)) { ajStrRemoveWhite(&line); c = ajStrGetCharFirst(line); if(c == '#' || c== '!') continue; if(ajStrGetLen(comm)) ajStrAppendC(&comm,","); ajStrFmtUpper(&line); ajStrAppendS(&comm,line); } *recurs += 1; jaspscan_ParseInput(dir,jaspdir,NULL,comm,recurs,ret); *recurs -= 1; ajListSortUnique(ret, ajStrVcmp, jaspscan_strdel); ajFileClose(&inf); } else { ajStrAssignS(&line,earr[i]); ajStrAppendC(&line,J_EXT); rlen = ajListGetLength(ret); for(j=0; j < rlen; ++j) { ajListPop(ret,(void **)&val); if(ajStrSuffixS(val,line)) ajStrDel(&val); else ajListPushAppend(ret,(void *)val); } } } for(i=0; i < ne; ++i) ajStrDel(&earr[i]); AJFREE(earr); } ajStrDel(&line); ajStrDel(&comm); return; }