int main(int argc, char* argv[])
{
int tafd = -1;
void* fptr = NULL;
if(argparse(argc, argv) == 0)
return 1;
tafd = open(args.inputFile, O_RDONLY | O_BINARY);
if(tafd < 0)
{
perror("Error opening TA file");
return tafd;
}
fptr = readFileToMemory(tafd);
if(fptr == NULL)
goto End;
if(args.TAUnit == 0)
TAPrintCommonInfo((unsigned char*)fptr, getFileSize(tafd));
else
TAReadUnit((unsigned char*)fptr, getFileSize(tafd), args.TAUnit, args.partition, args.outputMode);
releaseMappedMemory(fptr, getFileSize(tafd));
End:
close(tafd);
return 0;
}
int main(int argc, char *argv[])
{
if (argparse(argc, argv) == -1) {
exit(1);
}
exit(0);
}
int main(int argc, char** argv)
{
int ret = 0;
std::size_t numSnps;
#if MPI_FOUND
MPI_Init(&argc, &argv);
#endif
Argument<bool> help('h', "help", "Show this help", true, false);
Argument<bool> version('v', "version", "Version information", true, false);
Argument<std::string> hapA('d', "hapA", "Hap file for population A", false, false, "");
Argument<std::string> hapB('e', "hapB", "Hap file for population B", false, false, "");
Argument<std::string> map('m', "map", "Map file", false, false, "");
Argument<double> cutoff('c', "cutoff", "EHH cutoff value (default: 0.05)", false, false, 0.05);
Argument<double> minMAF('f', "minmaf", "Minimum allele frequency (default: 0.05)", false, false, 0.00);
Argument<double> binfac('b', "bin", "Frequency bin size (default: 0.02)", false, false, 0.02);
Argument<unsigned long long> scale('s', "scale", "Gap scale parameter in bp, used to scale gaps > scale parameter as in Voight, et al.", false, false, 20000);
Argument<std::string> outfile('o', "out", "Output file", false, false, "out.txt");
ArgParse argparse({&help, &version, &hapA, &hapB, &map, &outfile, &cutoff, &minMAF, &scale, &binfac}, "Usage: xpehhbin --map input.map --hapA inputA.hap --hapB inputB.hap");
if (!argparse.parseArguments(argc, argv))
{
ret = 1;
goto out;
}
if (help.value())
{
argparse.showHelp();
goto out;
}
else if (version.value())
{
argparse.showVersion();
goto out;
}
else if (!hapA.wasFound() || !hapB.wasFound() || !map.wasFound())
{
std::cout << "Please specify --hapA, --hapB, and --map." << std::endl;
ret = 2;
goto out;
}
numSnps = HapMap::querySnpLength(hapA.value().c_str());
std::cout << "Haplotypes in population A: " << numSnps << std::endl;
numSnps = HapMap::querySnpLength(hapB.value().c_str());
std::cout << "Haplotypes in population B: " << numSnps << std::endl;
calcXpehh(hapA.value(), hapB.value(), map.value(), outfile.value(), cutoff.value(), minMAF.value(), (double) scale.value(), binfac.value());
out:
#if MPI_FOUND
MPI_Barrier(MPI_COMM_WORLD);
MPI_Finalize();
#endif
return ret;
}
/********************************* M A I N ********************************/
int main (
int argc,
char **argv
) {
char **newargs = NULL;
LST_LIST *configlist;
ConfigType *config;
int status = TRUE;
printf ("MakeScan (c) Echidna 1990\n");
if (!(argc == 2 && argv[1][0] == '?' && argv[1][1] == '\0')) {
newargs = argparse (argc, argv, Template);
}
if (!newargs) {
if (GlobalErrMsg) {
printf ("%s\n", GlobalErrMsg);
}
printarghelp (Usage, Template);
} else {
DebugSwitch = (int )((long)newargs[ARG_DEBUG]);
if ((configlist = ReadConfigurationFile (newargs[ARG_CONFIG]))) {
if (DebugSwitch) {
PrintConfigList (configlist);
}
if (newargs[ARG_RULE]) {
strupr (newargs[ARG_RULE]);
if (!(config = (ConfigType*)LST_FindName (configlist, newargs[ARG_RULE]))) {
SetGlobalErr (ERR_GENERIC);
GEprintf1 ("No such rule '%s'", newargs[ARG_RULE]);
status = FALSE;
}
} else {
config = (ConfigType*)LST_Head (configlist);
}
if (status) {
if (!CreateFiles (config, newargs[ARG_MAKEFILE])) {
status = FALSE;
}
}
} else {
status = FALSE;
}
if (GlobalErr) {
printf ("%s\n", GlobalErrMsg);
status = FALSE;
}
}
return (status ? 0 : 20);
}
int main(int argc, char **argv)
{
char **newargs;
newargs = argparse (argc, argv, Template);
if (!newargs) {
EL_printf ("%s\n", GlobalErrMsg);
printarghelp (Usage, Template);
return EXIT_FAILURE;
} else {
if (FileNewer (ARG_SRCFILE, ARG_TARGFILE))
{
EL_printf ("%s", ARG_SRCFILE);
}
return EXIT_SUCCESS;
}
}
void test_argparse_1()
{
struct opt_style style1[] = {
{ OPTSTYLE_YES, "-a" }, OPT_STYLE_NULL
};
struct opt_type type[] = {
{ style1 }, OPT_TYPE_NULL
};
struct opt_parsed parsed[1] = { -1 };
int argc = 1;
const char *argv[] = {
"-a",
};
int res;
res = argparse(argc, argv, type, parsed);
CU_ASSERT_EQUAL(1, parsed[0].yesno);
CU_ASSERT_EQUAL(1, res);
}
void test_argparse_7()
{
struct opt_style style1[] = {
{ OPTSTYLE_NEXT, "-a" }, OPT_STYLE_NULL
};
struct opt_type type[] = {
{ style1 }, OPT_TYPE_NULL
};
struct opt_parsed parsed[1] = { -1 };
int argc = 2;
const char *argv[] = {
"-a", "XYZ",
};
int res;
res = argparse(argc, argv, type, parsed);
CU_ASSERT_PTR_EQUAL(argv[1], parsed[0].ptr);
CU_ASSERT_EQUAL(2, res);
}
int main(int argc, char *argv[], char *envp[]) {
argparse(argc, argv, &conf);
if (!conf.valid) {
fprintf(stderr, "Usage:\n tracer [-x trace.xml | -p trace.pl] /path/to/command [args]\n");
return EXIT_FAILURE;
}
int offset = 3;
if (conf.output == NULL) {
output = stdout;
offset = 1;
} else {
output = fopen(conf.output, "w");
if (output == NULL) {
fprintf(stderr, "Unable to open output file!\n");
return 1;
}
}
child_pid = fork();
if (child_pid == 0)
child(&argv[offset], envp); //samostatne polozky pro jmeno a char** args, tzn. nzev bin je (args-1)
else
parent();
if (output != stdout)
fclose(output);
return 0;
}
void test_argparse_6()
{
struct opt_style style1[] = {
{ OPTSTYLE_AFTER, "-a" },
{ OPTSTYLE_AFTER, "-b" },
{ OPTSTYLE_AFTER, "-c" }, OPT_STYLE_NULL
};
struct opt_type type[] = {
{ style1 }, OPT_TYPE_NULL
};
struct opt_parsed parsed[1] = { -1 };
int argc = 1;
const char *argv[] = {
"-bXYZ",
};
int res;
res = argparse(argc, argv, type, parsed);
CU_ASSERT_PTR_EQUAL(argv[0] + 2, parsed[0].ptr);
CU_ASSERT_EQUAL(1, res);
}
int
handle(const int fd, db_t *db, sbuf_t *in, sbuf_t *out)
{
ssize_t err;
ssize_t len;
char *key;
uint32_t klen;
uint32_t vlen;
int argc;
int arglen;
char argv[ARGC_MAX][ARGV_MAX];
if ((err = sbuf_recv(fd, in, &len)) <= 0 && len == 0) {
if (err == -1) {
fprintf(stdout, "db-server: socket %d recv %s\n", fd, strerror(errno));
}
return HANDLE_CLOSE;
}
arglen = argparse(in->buf, in->len, &argc, argv, ARGC_MAX);
if (argc < 1 || arglen == -1) {
fprintf(stderr, "db-server: socket %d malformed request\n", fd);
return HANDLE_CLOSE;
}
if (strcmp(argv[0], "set") == 0 && argc >= 5) {
key = argv[1];
klen = strlen(key);
vlen = atoi(argv[4]);
if (vlen + arglen > in->max) {
fprintf(stderr, "db-server: socket %d too large value\n", fd);
return HANDLE_CLOSE;
}
if (vlen + arglen > in->len) {
return HANDLE_NEEDMOREIN;
}
if (db_put(db, key, klen, in->buf + arglen, vlen) == DB_OK) {
out->len = sprintf(out->buf, "STORED\r\n");
} else {
out->len = sprintf(out->buf, "ERROR\r\n");
}
} else if (strcmp(argv[0], "get") == 0 && argc >= 2) {
key = argv[1];
klen = strlen(key);
if ((vlen = db_get(db, key, klen, valbuf, VALBUF_LEN)) != 0) {
if (vlen > VALBUF_LEN)
return HANDLE_CLOSE;
out->len = snprintf(out->buf, out->max,
"VALUE %.*s %d %d\r\n%.*s\r\nEND\r\n",
klen, key, 0, vlen, vlen, valbuf);
} else {
out->len = sprintf(out->buf, "END\r\n");
}
} else if (strcmp(argv[0], "delete") == 0 && argc >= 2) {
key = argv[1];
klen = strlen(key);
if ((db_del(db, key, klen)) != 0) {
out->len = snprintf(out->buf, out->max, "DELETED\r\n");
} else {
out->len = snprintf(out->buf, out->max, "NOT_FOUND\r\n");
}
} else {
return HANDLE_CLOSE;
}
if ((err = sbuf_send(fd, out, &len)) <= 0 && len == 0) {
if (err == -1) {
fprintf(stdout, "db-server: socket %d send %s\n", fd, strerror(errno));
}
return HANDLE_CLOSE;
}
if (out->off < out->len) {
return HANDLE_NEEDMOREOUT;
}
return HANDLE_FINISH;
}
int
main(int argc, char **argv)
{
int retval;
/*
* Some versions of cron(8) and at(1) set SIGCHLD to SIG_IGN.
* This is kinda dumb, because it breaks assumprions made in
* libc (like pclose, for instance). It also blows away most
* of Cook's process handling. We explicitly set the SIGCHLD
* signal handling to SIG_DFL to make sure this signal does what
* we expect no matter how we are invoked.
*/
#ifdef SIGCHLD
signal(SIGCHLD, SIG_DFL);
#else
signal(SIGCLD, SIG_DFL);
#endif
/*
* initialize things
* (order is critical here)
*/
progname_set(argv[0]);
str_initialize();
id_initialize();
lex_initialize();
/*
* parse the COOK environment variable
*/
arglex_init_from_env(argv[0], argtab);
argparse(OPTION_LEVEL_ENVIRONMENT);
/*
* parse the command line
*/
arglex_init(argc, argv, argtab);
argparse(OPTION_LEVEL_COMMAND_LINE);
option_tidy_up();
log_open();
/*
* turn on progress stars if they asked for them
*/
if (option_test(OPTION_STAR))
star_enable();
/*
* If we were asked to update the fingerprints, do it here.
* We don't actually ant to read in the cookbook.
*/
if (option.fingerprint_update)
{
fp_tweak();
quit(0);
}
/*
* read in the cook book
*
* If there are #include-cooked directives,
* we may need to do it more than once.
*/
if (!option.o_book)
fatal_intl(0, i18n("no book found"));
for (;;)
{
int status;
size_t j;
builtin_initialize();
/*
* instanciate the command line variable assignments
*/
for (j = 0; j < option.o_vardef.nstrings; ++j)
{
char *s;
char *cp;
string_ty *name;
string_ty *value;
string_list_ty wl;
opcode_context_ty *ocp;
s = option.o_vardef.string[j]->str_text;
cp = strchr(s, '=');
assert(cp);
if (!cp)
continue;
name = str_n_from_c(s, cp - s);
value = str_from_c(cp + 1);
str2wl(&wl, value, (char *)0, 0);
str_free(value);
ocp = opcode_context_new(0, 0);
opcode_context_id_assign(ocp, name, id_variable_new(&wl), 0);
opcode_context_delete(ocp);
str_free(name);
string_list_destructor(&wl);
}
set_command_line_goals();
parse(option.o_book);
status = cook_auto_required();
if (status < 0)
quit(1);
if (!status)
break;
id_reset();
cook_reset();
}
/*
* work out what to cook.
* If no targets have been given, use the first explicit recipe.
*/
set_command_line_goals();
if (!option.o_target.nstrings)
cook_find_default(&option.o_target);
assert(option.o_target.nstrings);
/*
* cook the target
*/
if (option.pairs)
retval = cook_pairs(&option.o_target);
else if (option.script)
retval = cook_script(&option.o_target);
else if (option.web)
retval = cook_web(&option.o_target);
else
retval = cook(&option.o_target);
#ifdef DEBUG
fflush_slowly_report();
#endif
quit(retval);
/*NOTREACHED*/
return 0;
}
int
main(int argc, char *argv[])
{
char *env_top;
char **preset_argv;
int preset_argc = 0;
void *mask;
int need_mini = 1;
struct statics statics;
globalstate *gstate;
/* get our name */
if (argc > 0)
{
if ((myname = strrchr(argv[0], '/')) == 0)
{
myname = argv[0];
}
else
{
myname++;
}
}
/* binary compatibility check */
#ifdef HAVE_UNAME
{
struct utsname uts;
if (uname(&uts) == 0)
{
if (strcmp(uts.machine, UNAME_HARDWARE) != 0)
{
fprintf(stderr, "%s: incompatible hardware platform\n",
myname);
exit(EX_UNAVAILABLE);
}
}
}
#endif
/* initialization */
gstate = (globalstate *)calloc(1, sizeof(globalstate));
gstate->statics = &statics;
time_mark(NULL);
/* preset defaults for various options */
gstate->show_usernames = Yes;
gstate->topn = DEFAULT_TOPN;
gstate->delay = DEFAULT_DELAY;
gstate->fulldraw = Yes;
gstate->use_color = Yes;
gstate->interactive = Maybe;
/* preset defaults for process selection */
gstate->pselect.idle = Yes;
gstate->pselect.system = No;
gstate->pselect.fullcmd = No;
gstate->pselect.command = NULL;
gstate->pselect.uid = -1;
gstate->pselect.mode = 0;
/* use a large buffer for stdout */
#ifdef HAVE_SETVBUF
setvbuf(stdout, stdoutbuf, _IOFBF, BUFFERSIZE);
#else
#ifdef HAVE_SETBUFFER
setbuffer(stdout, stdoutbuf, BUFFERSIZE);
#endif
#endif
/* get preset options from the environment */
if ((env_top = getenv("TOP")) != NULL)
{
preset_argv = argparse(env_top, &preset_argc);
preset_argv[0] = myname;
do_arguments(gstate, preset_argc, preset_argv);
}
/* process arguments */
do_arguments(gstate, argc, argv);
#ifdef ENABLE_COLOR
/* If colour has been turned on read in the settings. */
env_top = getenv("TOPCOLOURS");
if (!env_top)
{
env_top = getenv("TOPCOLORS");
}
/* must do something about error messages */
color_env_parse(env_top);
color_activate(gstate->use_color);
#endif
/* in order to support forward compatability, we have to ensure that
the entire statics structure is set to a known value before we call
machine_init. This way fields that a module does not know about
will retain their default values */
memzero((void *)&statics, sizeof(statics));
statics.boottime = -1;
/* call the platform-specific init */
if (machine_init(&statics) == -1)
{
exit(EX_SOFTWARE);
}
/* create a helper list of sort order names */
gstate->order_namelist = string_list(statics.order_names);
/* look up chosen sorting order */
if (gstate->order_name != NULL)
{
int i;
if (statics.order_names == NULL)
{
message_error(" This platform does not support arbitrary ordering");
}
else if ((i = string_index(gstate->order_name,
statics.order_names)) == -1)
{
message_error(" Sort order `%s' not recognized", gstate->order_name);
message_error(" Recognized sort orders: %s", gstate->order_namelist);
}
else
{
gstate->order_index = i;
}
}
/* initialize extensions */
init_username();
/* initialize termcap */
gstate->smart_terminal = screen_readtermcap(gstate->interactive);
/* determine interactive state */
if (gstate->interactive == Maybe)
{
gstate->interactive = smart_terminal;
}
/* if displays were not specified, choose an appropriate default */
if (gstate->displays == 0)
{
gstate->displays = gstate->smart_terminal ? Infinity: 1;
}
/* we don't need a mini display when delay is less than 2
seconds or when we are not on a smart terminal */
if (gstate->delay <= 1 || !smart_terminal)
{
need_mini = 0;
}
/* set constants for username/uid display */
if (gstate->show_usernames)
{
gstate->header_text = format_header("USERNAME");
gstate->get_userid = username;
}
else
{
gstate->header_text = format_header(" UID ");
gstate->get_userid = itoa7;
}
gstate->pselect.usernames = gstate->show_usernames;
/* initialize display */
if ((gstate->max_topn = display_init(&statics)) == -1)
{
fprintf(stderr, "%s: can't allocate sufficient memory\n", myname);
exit(EX_OSERR);
}
/* check for infinity and for overflowed screen */
if (gstate->topn == Infinity)
{
gstate->topn = INT_MAX;
}
else if (gstate->topn > gstate->max_topn)
{
#if 0
message_error(" This terminal can only display %d processes",
gstate->max_topn);
#endif
}
#ifdef ENABLE_COLOR
/* producing a list of color tags is easy */
if (gstate->show_tags)
{
color_dump(stdout);
exit(EX_OK);
}
#endif
/* hold all signals while we initialize the screen */
mask = hold_signals();
screen_init();
/* set the signal handlers */
set_signals();
/* longjmp re-entry point */
/* set the jump buffer for long jumps out of signal handlers */
if (setjmp(jmp_int) != 0)
{
/* this is where we end up after processing sigwinch or sigtstp */
/* tell display to resize its buffers, and get the new length */
if ((gstate->max_topn = display_resize()) == -1)
{
/* thats bad */
quit(EX_OSERR);
/*NOTREACHED*/
}
/* set up for a full redraw, and get the current line count */
gstate->fulldraw = Yes;
/* safe to release the signals now */
release_signals(mask);
}
else
{
/* release the signals */
release_signals(mask);
/* some systems require a warmup */
/* always do a warmup for batch mode */
if (gstate->interactive == 0 || statics.flags.warmup)
{
struct system_info system_info;
struct timeval timeout;
time_mark(&(gstate->now));
get_system_info(&system_info);
(void)get_process_info(&system_info, &gstate->pselect, 0);
timeout.tv_sec = 1;
timeout.tv_usec = 0;
select(0, NULL, NULL, NULL, &timeout);
/* if we've warmed up, then we can show good states too */
gstate->show_cpustates = Yes;
need_mini = 0;
}
}
/* main loop */
while ((gstate->displays == -1) || (--gstate->displays > 0))
{
do_display(gstate);
if (gstate->interactive)
{
if (need_mini)
{
do_minidisplay(gstate);
need_mini = 0;
}
do_command(gstate);
}
else
{
do_wait(gstate);
}
}
/* do one last display */
do_display(gstate);
quit(EX_OK);
/* NOTREACHED */
return 1; /* Keep compiler quiet. */
}
int main( int argc, char* args[] ) {
auto arguments = argparse(argc, args);
try {
SDL::SDL sdl;
SDL::Window win;
SDL::Renderer rend ( win );
SDL::TTF font ( FONT_PATH );
SDL::Image img;
gImage.insertPaths(arguments);
if ( !gImage.loadFromFile(rend.renderer)) {
printf("Failed to load image...");
} else {
SDL_Rect srcrect, dstrect;
SDL_Event e;
SDL_Point mouse_image_coords;
//default src and dst rectangles of images. No clipping and fitting everything on the window
srcrect = {0,0, gImage.getWidth(), gImage.getHeight()};
dstrect = center_fit( gImage.getWidth(), gImage.getHeight(), SCREEN_WIDTH, SCREEN_HEIGHT );
while( !uInput.quit() ) {
while( SDL_PollEvent( &e ) != 0 ) {
uInput.handleEvent(&e);
if (uInput.next()) {
gImage.next();
if ( !gImage.loadFromFile(rend.renderer) ) {
printf("Failed to load image...");
} else {
srcrect = {0,0, gImage.getWidth(), gImage.getHeight()};
dstrect = center_fit( gImage.getWidth(), gImage.getHeight(), SCREEN_WIDTH, SCREEN_HEIGHT );
}
}
if (uInput.previous()) {
gImage.previous();
if ( !gImage.loadFromFile(rend.renderer) ) {
printf("Failed to load image...");
} else {
srcrect = {0,0, gImage.getWidth(), gImage.getHeight()};
dstrect = center_fit( gImage.getWidth(), gImage.getHeight(), SCREEN_WIDTH, SCREEN_HEIGHT );
}
}
SDL_SetRenderDrawColor( rend.renderer, 0x00, 0x00, 0x00, 0xFF );
SDL_RenderClear( rend.renderer);
//click and drag around
if (uInput.mouseIsDown()) {
update_position( uInput.getRelativeMotion(), &dstrect );
}
mouse_image_coords = rect_coordinates(uInput.getMousePosition(), dstrect);
update_zoom(uInput.getWheel(), mouse_image_coords, &dstrect);
gImage.render(rend.renderer, &srcrect, &dstrect);
SDL_RenderPresent( rend.renderer);
}
}
}
} catch (std::string str) {
std::cout << str << "\n";
}
return 0;
}
int main(int argc, char **argv)
{
char **newargs;
LST_InitList (FileList);
newargs = argparse (argc, argv, Template);
if (!newargs) {
EL_printf ("%s\n", GlobalErrMsg);
printarghelp (Usage, Template);
return EXIT_FAILURE;
} else {
Verbose = SWITCH_VALUE(ARG_VERBOSE);
Pack = !SWITCH_VALUE(ARG_PACK);
LittleEndian = !SWITCH_VALUE(ARG_BIGENDIAN);
HeaderNdxs = SWITCH_VALUE(ARG_CONST);
if (ARG_HDFORMAT) hdformat = ARG_HDFORMAT;
if (ARG_BYTES) PadSize = EL_atol (ARG_BYTES);
if (ARG_HEADER && !HeaderNdxs)
{
BinOffsets = FALSE;
}
//
// load all requested files
//
{
LST_LIST *nameList;
LST_NODE *nd;
nameList = MULTI_ARGLINKEDLIST(ARG_INFILES);
nd = LST_Head (nameList);
while (!LST_EndOfList (nd))
{
int fh;
long size;
char *filename;
filename = LST_NodeName (nd);
fh = CHK_ReadOpen (filename);
{
size = CHK_FileLength (fh);
if (size == 0)
{
WarnMess ("File '%s' is zero bytes long\n", filename);
}
if (Pack)
{
if (Verbose)
{
EL_printf ("Reading %14s : size %6ld", filename, size);
}
if (size)
{
buf = CHK_AllocateMemory (size, filename);
CHK_Read (fh, buf, size);
}
}
//
// see if it's the same as a previous file
//
{
FileContents *fc;
FileContents *newfc;
newfc = (FileContents*)CHK_CreateNode (sizeof (FileContents), filename, "FileContents");
if (Pack)
{
fc = (FileContents*)LST_Head (FileList);
while (!LST_EndOfList (fc))
{
if (fc->Size)
{
if (!memcmp (fc->Data, buf, size))
{
break;
}
}
fc = (FileContents*)LST_Next (fc);
}
}
if (Pack && !LST_EndOfList (fc))
{
//
// it was the same
//
newfc->Offset = fc->Offset;
if (Verbose)
{
EL_printf (" : Same as %s", LST_NodeName(fc));
}
CHK_DeallocateMemory (buf, "FileContents");
}
else
{
//
// it was different
//
newfc->Size = size;
newfc->Offset = CurrentAddress;
size = (size + PadSize - 1) / PadSize;
size *= PadSize;
newfc->PadSize = size;
CurrentAddress += size;
if (Pack)
{
newfc->Data = buf;
}
}
CHK_Close (fh);
if (Pack && Verbose)
{
EL_printf ("\n");
}
LST_AddTail (FileList, newfc);
TotalFiles++;
}
}
nd = LST_Next (nd);
}
}
/******************************* Write Files ******************************/
if (!ErrorCount)
{
FILE *fp;
int fh;
FileContents *fc;
UINT32 offsetTableSize;
UINT32 ndxCount = 0;
fh = CHK_WriteOpen (ARG_OUTFILE);
if (ARG_HEADER)
{
fp = CHK_fopen (ARG_HEADER, "w");
}
if (!BinOffsets)
{
offsetTableSize = 0;
}
else
{
offsetTableSize = (TotalFiles + 1) * sizeof (UINT32);
}
if (Verbose)
{
EL_printf ("Writing %ld bytes to file %s\n", CurrentAddress + offsetTableSize, ARG_OUTFILE);
}
fc = (FileContents*)LST_Head (FileList);
while (!LST_EndOfList (fc))
{
UINT32 offset;
offset = fc->Offset + offsetTableSize;
if (ARG_HEADER)
{
char work[EIO_MAXPATH];
UINT32 hoffset;
hoffset = (HeaderNdxs) ? ndxCount : offset;
strcpy (work, EIO_Filename(LST_NodeName(fc)));
strupr (work);
{
char *s;
s = work;
while (*s)
{
if (*s == '.' || *s == '-')
{
*s = '_';
}
s++;
}
}
CHK_fprintf (fp,
hdformat,
work,
hoffset
);
CHK_fprintf (fp, "\n");
}
if (BinOffsets)
{
if (LittleEndian)
{
MakeLilLong (offset);
}
else
{
MakeBigLong (offset);
}
CHK_Write (fh, &offset, sizeof (UINT32));
}
ndxCount++;
fc = (FileContents*)LST_Next (fc);
}
if (BinOffsets)
{
UINT32 zero = 0;
CHK_Write (fh, &zero, sizeof (UINT32));
}
fc = (FileContents*)LST_Head (FileList);
while (!LST_EndOfList (fc))
{
if (fc->Size)
{
if (Verbose)
{
EL_printf ("Writing %7ld bytes from %s\n", fc->Size, LST_NodeName (fc));
}
if (Pack)
{
if (fc->Size)
{
CHK_Write (fh, fc->Data, fc->Size);
}
}
else
{
int infh;
long bytes;
#define BUF_SIZE (1024*1024)
buf = CHK_AllocateMemory (BUF_SIZE, "copy buffer");
infh = CHK_ReadOpen (LST_NodeName(fc));
bytes = fc->Size;
while (bytes)
{
long len;
len = min (bytes, BUF_SIZE);
CHK_Read (infh, buf, len);
CHK_Write (fh, buf, len);
bytes -= len;
}
CHK_Close (infh);
CHK_DeallocateMemory (buf, "copy buffer");
}
}
{
UINT32 pad;
pad = fc->PadSize - fc->Size;
while (pad)
{
UINT32 part;
part = min (pad, 256);
CHK_Write (fh, ZeroData, part);
pad -= part;
}
}
fc = (FileContents*)LST_Next (fc);
}
CHK_Close (fh);
}
/************************************ ************************************/
}
if (GlobalErr) {
EL_printf ("%s\n", GlobalErrMsg);
return EXIT_FAILURE;
}
if (ErrorCount)
{
return EXIT_FAILURE;
}
return EXIT_SUCCESS;
}
int main(int argc, char **argv)
{
char **newargs;
char destDirSep = DIRSEP;
#if _EL_PLAT_WIN32__
char *destEOL = "\x0d\x0a";
#elif _EL_PLAT_MACOS__
char *destEOL = "\x0d";
#elif _EL_PLAT_SGI__
char *destEOL = "\x0a";
#endif
newargs = argparse (argc, argv, Template);
if (!newargs) {
EL_printf ("%s\n", GlobalErrMsg);
printarghelp (Usage, Template);
return EXIT_FAILURE;
} else {
FILE *infp;
FILE *outfp;
short lineno = 0;
Verbose = SWITCH_VALUE(ARG_VERBOSE);
if (ARG_MODE)
{
long mode;
mode = EL_atol (ARG_MODE);
switch (mode)
{
case 0: // native
break;
case 1: // ms-dos
destDirSep = '\\';
destEOL = "\x0d\x0a";
break;
case 2: // mac
destDirSep = ':';
destEOL = "\x0d";
break;
case 3: // unix
destDirSep = '/';
destEOL = "\x0a";
break;
case 4: // 3do
destDirSep = '/';
destEOL = "\x0d";
break;
default:
EL_printf ("Error: Unknown mode #%ld\n", mode);
return EXIT_FAILURE;
}
}
infp = fopen (ARG_INFILE, "rb");
if (!infp)
{
EL_printf ("Couldn't open '%s'\n", ARG_INFILE);
exit (EXIT_FAILURE);
}
outfp = fopen (ARG_OUTFILE, "wb");
if (!outfp)
{
EL_printf ("Couldn't open '%s'\n", ARG_OUTFILE);
exit (EXIT_FAILURE);
}
while (getline (InLine, MAXLINE, infp))
{
char *s;
char quote;
lineno++;
s = SkipWhiteSpace (InLine);
while (isspace (*s))
{
s++;
}
if (!strncmp (s, "#include", 8))
{
//
// found include line, translate it
//
s += 8;
s = SkipWhiteSpace (s);
if (Verbose)
{
EL_printf ("Old:#%4d:%-60s\n", lineno, InLine);
}
switch (*s)
{
case '<':
quote = '>';
break;
case '"':
quote = '"';
break;
default:
EL_printf ("Error1: Malformed Include at line %d in file %s\n", lineno, ARG_INFILE);
exit (EXIT_FAILURE);
}
s++;
while (*s && *s != quote)
{
if (
(*s == '\\') ||
(*s == '/') ||
(*s == ':')
)
{
*s = destDirSep;
}
s++;
}
if (*s != quote)
{
EL_printf ("Error2: Malformed Include at line %d in file %s\n", lineno, ARG_INFILE);
exit (EXIT_FAILURE);
}
if (Verbose)
{
EL_printf ("New:#%4d:%-60s\n", lineno, InLine);
}
}
fputs (InLine, outfp);
fputs (destEOL, outfp);
}
fclose (infp);
fclose (outfp);
{
FileDateType fdt;
if (!EIO_GetFileDate (ARG_INFILE, &fdt)) {
goto cleanup;
}
if (!EIO_SetFileDate (ARG_OUTFILE, &fdt)) {
goto cleanup;
}
}
{
FileAttribType fat;
if (!EIO_GetFileAttrib (ARG_INFILE, &fat)) {
goto cleanup;
}
if (!EIO_SetFileAttrib (ARG_OUTFILE, &fat)) {
goto cleanup;
}
}
{
FileCommentType fct;
if (!EIO_GetFileComment (ARG_INFILE, &fct)) {
goto cleanup;
}
if (!EIO_SetFileComment (ARG_OUTFILE, &fct)) {
goto cleanup;
}
}
}
cleanup:
if (GlobalErr) {
EL_printf ("%s\n", GlobalErrMsg);
return EXIT_FAILURE;
}
return EXIT_SUCCESS;
}
