void ComponentIf::Evaluate(int timestamp)
{
UPDATE_TIMESTAMP();
if (m_inputs[1].comp == NULL || m_inputs[2].comp == NULL)
{
assignDefaultValue(m_outputs[0].value, m_outputs[0].type);
return;
}
bool cond = true;
GetInput(0, &cond);
if (cond)
{
if (PASS_TIMESTAMP(m_inputs[1]))
m_inputs[1].comp->Evaluate(timestamp);
assignValue(m_outputs[0].value, m_inputs[1].value, m_outputs[0].type);
}
else
{
if (PASS_TIMESTAMP(m_inputs[2]))
m_inputs[2].comp->Evaluate(timestamp);
assignValue(m_outputs[0].value, m_inputs[2].value, m_outputs[0].type);
}
}
void ComponentOp2::Evaluate(int timestamp)
{
UPDATE_TIMESTAMP();
if (m_inputs[0].comp == NULL || m_inputs[1].comp == NULL)
{
assignDefaultValue(m_outputs[0].value, m_outputs[0].type);
return;
}
// There are certainly better ways to do this, but I'm not using them yet
double v0d, v1d;
bool v0b, v1b;
void *v0, *v1;
if (m_inputs[0].type == CT_DOUBLE) v0 = &v0d;
else if (m_inputs[0].type == CT_BOOL) v0 = &v0b;
if (m_inputs[1].type == CT_DOUBLE) v1 = &v1d;
else if (m_inputs[1].type == CT_BOOL) v1 = &v1b;
if (PASS_TIMESTAMP(m_inputs[0]))
m_inputs[0].comp->Evaluate(timestamp);
if (PASS_TIMESTAMP(m_inputs[1]))
m_inputs[1].comp->Evaluate(timestamp);
assignValue(v0, m_inputs[0].value, m_inputs[0].type);
assignValue(v1, m_inputs[1].value, m_inputs[1].type);
if (m_operator == '+')
*(double *)m_outputs[0].value = *(double *)v0 + *(double *)v1;
else if (m_operator == '-')
*(double *)m_outputs[0].value = *(double *)v0 - *(double *)v1;
else if (m_operator == '*')
*(double *)m_outputs[0].value = *(double *)v0 * *(double *)v1;
else if (m_operator == '/')
*(double *)m_outputs[0].value = *(double *)v0 / *(double *)v1;
else if (m_operator == '<')
*(bool *)m_outputs[0].value = *(double *)v0 < *(double *)v1;
else if (m_operator == '>')
*(bool *)m_outputs[0].value = *(double *)v0 > *(double *)v1;
else if (m_operator == '|')
*(bool *)m_outputs[0].value = *(bool *)v0 || *(bool *)v1;
else if (m_operator == '&')
*(bool *)m_outputs[0].value = *(bool *)v0 && *(bool *)v1;
else if (m_operator == '=')
{
if (m_inputs[0].type == CT_DOUBLE)
*(bool *)m_outputs[0].value = *(double *)v0 == *(double *)v1;
else if (m_inputs[0].type == CT_BOOL)
*(bool *)m_outputs[0].value = *(bool *)v0 == *(bool *)v1;
}
}
void probeMatcher(PipeMatcherRec* mrec, char write_flag, char req, char* ack, bit_vector* access_val)
{
PipeMatcherState s = getState(mrec);
if(s == _DONE)
{
if(req)
{
*ack = 1;
if(!write_flag)
getValue(mrec, access_val);
#ifdef DEBUG
fprintf(stderr,"probeMatcher: finished pipe-access %s %s %s\n", (write_flag ? "write" : "read"), mrec->_pipe_name,
(write_flag ? to_string(access_val) : to_string(mrec->_value)));
#endif
setState(mrec, _IDLE);
}
}
else if(s == _ACCESS)
{
*ack = 0;
}
else if(s == _IDLE)
{
if(req)
{
*ack = 0;
if(write_flag)
assignValue(mrec, access_val);
setState(mrec, _ACCESS);
}
}
}
void fetchFromPipe(PipeMatcherRec* mrec)
{
bit_vector tmp_val;
init_bit_vector(&tmp_val, mrec->_value->width);
read_bit_vector_from_pipe(mrec->_pipe_name, &tmp_val);
assignValue(mrec, &tmp_val);
}
int main()
{
///The metafunction @Metafunction.Iterator@ returns the iterator type for a given container type.
seqan::String<char> str = "admn";
seqan::Iterator<seqan::String<char> >::Type it = begin(str);
seqan::Iterator<seqan::String<char> >::Type itEnd = end(str);
///We can use iterators to iterate over the elements of a container.
while (it != itEnd) {
::std::cout << *it;
++it;
}
::std::cout << ::std::endl;
///Rooted iterators know their container (@Concept.RootedIteratorConcept|Rooted Iterator@).
///Hence, the functions @Function.goBegin@ and @Function.atEnd@ do
///not get $str$ as an argument.
///The following loop increments each character in $str$.
seqan::Iterator<seqan::String<char>, seqan::Rooted >::Type it2 = begin(str);
for (goBegin(it2); !atEnd(it2); goNext(it2))
{
++value(it2);
}
///Some iterators support an iteration in reverse order.
///Note that @Function.goPrevious@ is called before the value of $it2$ is accessed.
///Remember that the end position of a container is always the position behind the last item in the container.
goEnd(it2);
while (!atBegin(it2))
{
goPrevious(it2);
::std::cout << getValue(it2);
}
::std::cout << ::std::endl;
///@Function.assignValue@ can be used to change the value of an iterator.
assignValue(begin(str), 'X');
::std::cout << str << ::std::endl;
return 0;
}
//initialize List of contingency tables (one for every kmer)
void initializeCont (seqan::StringSet<seqan::DnaString> kmers, Contingency & allContigs){
// //Contingeny table for finding of one single kmer to store intermediate results
// Contingency oneContig;
unsigned l;
l=length(kmers);
//mock vector for mRNA IDs
std::vector<int> mock;
mock.push_back(-1);
//reserve space
allContigs.kmerDN.reserve(l);
allContigs.kmerNoDN.reserve(l);
allContigs.noKmerDN.reserve(l);
allContigs.noKmerNoDN.reserve(l);
allContigs.idNoDN.reserve(l);
allContigs.idDN.reserve(l);
//Initialize list of Contingency table for all the kmers
for (unsigned i=0; i<l; i++){
appendValue(allContigs.kmerSeq, "");
allContigs.kmerDN.push_back(0);
allContigs.kmerNoDN.push_back(0);
allContigs.noKmerDN.push_back(0);
allContigs.noKmerNoDN.push_back(0);
//initialize ID Lists for the mRNAs, in which the kmer was found with -1, since there is no mRNA with rank -1
allContigs.idNoDN.push_back(mock);
allContigs.idDN.push_back(mock);
}
//assign the kmer to the position in the Contingencies Table
for (unsigned j=0; j<l; j++){
if (length(getValue(allContigs.kmerSeq, kmerToID(getValue(kmers, j))))>0){
std::cerr << "kmer already set" << '\n';
std::cerr << getValue(allContigs.kmerSeq, kmerToID(getValue(kmers, j)))<< '\n';
return;
}
else {assignValue(allContigs.kmerSeq, kmerToID(getValue(kmers, j)), getValue(kmers, j));}
}
}
sExpression *evalAssignment(sExpression *exp, sEnvironment *env){
if(setVariable(assignSynbol(exp), eval(assignValue(exp), env), env)){
return &sTrue;
}
return &sFalse;
}