int fitstable_close(fitstable_t* tab) {
int i;
int rtn = 0;
if (!tab) return 0;
if (is_writing(tab)) {
if (fclose(tab->fid)) {
SYSERROR("Failed to close output file %s", tab->fn);
rtn = -1;
}
}
if (tab->anq) {
anqfits_close(tab->anq);
}
if (tab->readfid) {
fclose(tab->readfid);
}
if (tab->primheader)
qfits_header_destroy(tab->primheader);
if (tab->header)
qfits_header_destroy(tab->header);
if (tab->table)
qfits_table_close(tab->table);
free(tab->fn);
for (i=0; i<ncols(tab); i++) {
fitscol_t* col = getcol(tab, i);
free(col->colname);
free(col->units);
}
bl_free(tab->cols);
if (tab->br) {
buffered_read_free(tab->br);
free(tab->br);
}
if (tab->rows) {
bl_free(tab->rows);
}
if (tab->extensions) {
for (i=0; i<bl_size(tab->extensions); i++) {
fitsext_t* ext = bl_access(tab->extensions, i);
if (ext->rows != tab->rows)
bl_free(ext->rows);
if (ext->header != tab->header)
qfits_header_destroy(ext->header);
if (ext->table != tab->table)
qfits_table_close(ext->table);
}
bl_free(tab->extensions);
}
free(tab);
return rtn;
}
int main(int argc, char *argv[]) {
int argchar;
char* progname = argv[0];
sl* infns = sl_new(16);
char* outfnpat = NULL;
char* racol = "RA";
char* deccol = "DEC";
char* tempdir = "/tmp";
anbool gzip = FALSE;
sl* cols = sl_new(16);
int loglvl = LOG_MSG;
int nside = 1;
double margin = 0.0;
int NHP;
double md;
char* backref = NULL;
fitstable_t* intable;
fitstable_t** outtables;
char** myargs;
int nmyargs;
int i;
while ((argchar = getopt (argc, argv, OPTIONS)) != -1)
switch (argchar) {
case 'b':
backref = optarg;
break;
case 't':
tempdir = optarg;
break;
case 'c':
sl_append(cols, optarg);
break;
case 'g':
gzip = TRUE;
break;
case 'o':
outfnpat = optarg;
break;
case 'r':
racol = optarg;
break;
case 'd':
deccol = optarg;
break;
case 'n':
nside = atoi(optarg);
break;
case 'm':
margin = atof(optarg);
break;
case 'v':
loglvl++;
break;
case '?':
fprintf(stderr, "Unknown option `-%c'.\n", optopt);
case 'h':
printHelp(progname);
return 0;
default:
return -1;
}
if (sl_size(cols) == 0) {
sl_free2(cols);
cols = NULL;
}
nmyargs = argc - optind;
myargs = argv + optind;
for (i=0; i<nmyargs; i++)
sl_append(infns, myargs[i]);
if (!sl_size(infns)) {
printHelp(progname);
printf("Need input filenames!\n");
exit(-1);
}
log_init(loglvl);
fits_use_error_system();
NHP = 12 * nside * nside;
logmsg("%i output healpixes\n", NHP);
outtables = calloc(NHP, sizeof(fitstable_t*));
assert(outtables);
md = deg2dist(margin);
/**
About the mincaps/maxcaps:
These have a center and radius-squared, describing the region
inside a small circle on the sphere.
The "mincaps" describe the regions that are definitely owned by a
single healpix -- ie, more than MARGIN distance from any edge.
That is, the mincap is the small circle centered at (0.5, 0.5) in
the healpix and with radius = the distance to the closest healpix
boundary, MINUS the margin distance.
Below, we first check whether a new star is within the "mincap"
of any healpix. If so, we stick it in that healpix and continue.
Otherwise, we check all the "maxcaps" -- these are the healpixes
it could *possibly* be in. We then refine with
healpix_within_range_of_xyz. The maxcap distance is the distance
to the furthest boundary point, PLUS the margin distance.
*/
cap_t* mincaps = malloc(NHP * sizeof(cap_t));
cap_t* maxcaps = malloc(NHP * sizeof(cap_t));
for (i=0; i<NHP; i++) {
// center
double r2;
double xyz[3];
double* cxyz;
double step = 1e-3;
double v;
double r2b, r2a;
cxyz = mincaps[i].xyz;
healpix_to_xyzarr(i, nside, 0.5, 0.5, mincaps[i].xyz);
memcpy(maxcaps[i].xyz, cxyz, 3 * sizeof(double));
logverb("Center of HP %i: (%.3f, %.3f, %.3f)\n", i, cxyz[0], cxyz[1], cxyz[2]);
// radius-squared:
// max is the easy one: max of the four corners (I assume)
r2 = 0.0;
healpix_to_xyzarr(i, nside, 0.0, 0.0, xyz);
logverb(" HP %i corner 1: (%.3f, %.3f, %.3f), distsq %.3f\n", i, xyz[0], xyz[1], xyz[2], distsq(xyz, cxyz, 3));
r2 = MAX(r2, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, 1.0, 0.0, xyz);
logverb(" HP %i corner 1: (%.3f, %.3f, %.3f), distsq %.3f\n", i, xyz[0], xyz[1], xyz[2], distsq(xyz, cxyz, 3));
r2 = MAX(r2, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, 0.0, 1.0, xyz);
logverb(" HP %i corner 1: (%.3f, %.3f, %.3f), distsq %.3f\n", i, xyz[0], xyz[1], xyz[2], distsq(xyz, cxyz, 3));
r2 = MAX(r2, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, 1.0, 1.0, xyz);
logverb(" HP %i corner 1: (%.3f, %.3f, %.3f), distsq %.3f\n", i, xyz[0], xyz[1], xyz[2], distsq(xyz, cxyz, 3));
r2 = MAX(r2, distsq(xyz, cxyz, 3));
logverb(" max distsq: %.3f\n", r2);
logverb(" margin dist: %.3f\n", md);
maxcaps[i].r2 = square(sqrt(r2) + md);
logverb(" max cap distsq: %.3f\n", maxcaps[i].r2);
r2a = r2;
r2 = 1.0;
r2b = 0.0;
for (v=0; v<=1.0; v+=step) {
healpix_to_xyzarr(i, nside, 0.0, v, xyz);
r2 = MIN(r2, distsq(xyz, cxyz, 3));
r2b = MAX(r2b, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, 1.0, v, xyz);
r2 = MIN(r2, distsq(xyz, cxyz, 3));
r2b = MAX(r2b, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, v, 0.0, xyz);
r2 = MIN(r2, distsq(xyz, cxyz, 3));
r2b = MAX(r2b, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, v, 1.0, xyz);
r2 = MIN(r2, distsq(xyz, cxyz, 3));
r2b = MAX(r2b, distsq(xyz, cxyz, 3));
}
mincaps[i].r2 = square(MAX(0, sqrt(r2) - md));
logverb("\nhealpix %i: min rad %g\n", i, sqrt(r2));
logverb("healpix %i: max rad %g\n", i, sqrt(r2a));
logverb("healpix %i: max rad(b) %g\n", i, sqrt(r2b));
assert(r2a >= r2b);
}
if (backref) {
fitstable_t* tab = fitstable_open_for_writing(backref);
int maxlen = 0;
char* buf;
for (i=0; i<sl_size(infns); i++) {
char* infn = sl_get(infns, i);
maxlen = MAX(maxlen, strlen(infn));
}
fitstable_add_write_column_array(tab, fitscolumn_char_type(), maxlen,
"filename", NULL);
fitstable_add_write_column(tab, fitscolumn_i16_type(), "index", NULL);
if (fitstable_write_primary_header(tab) ||
fitstable_write_header(tab)) {
ERROR("Failed to write header of backref table \"%s\"", backref);
exit(-1);
}
buf = malloc(maxlen+1);
assert(buf);
for (i=0; i<sl_size(infns); i++) {
char* infn = sl_get(infns, i);
int16_t ind;
memset(buf, 0, maxlen);
strcpy(buf, infn);
ind = i;
if (fitstable_write_row(tab, buf, &ind)) {
ERROR("Failed to write row %i of backref table: %s = %i",
i, buf, ind);
exit(-1);
}
}
if (fitstable_fix_header(tab) ||
fitstable_close(tab)) {
ERROR("Failed to fix header & close backref table");
exit(-1);
}
logmsg("Wrote backref table %s\n", backref);
free(buf);
}
for (i=0; i<sl_size(infns); i++) {
char* infn = sl_get(infns, i);
char* originfn = infn;
int r, NR;
tfits_type any, dubl;
il* hps = NULL;
bread_t* rowbuf;
int R;
char* tempfn = NULL;
char* padrowdata = NULL;
int ii;
logmsg("Reading input \"%s\"...\n", infn);
if (gzip) {
char* cmd;
int rtn;
tempfn = create_temp_file("hpsplit", tempdir);
asprintf_safe(&cmd, "gunzip -cd %s > %s", infn, tempfn);
logmsg("Running: \"%s\"\n", cmd);
rtn = run_command_get_outputs(cmd, NULL, NULL);
if (rtn) {
ERROR("Failed to run command: \"%s\"", cmd);
exit(-1);
}
free(cmd);
infn = tempfn;
}
intable = fitstable_open(infn);
if (!intable) {
ERROR("Couldn't read catalog %s", infn);
exit(-1);
}
NR = fitstable_nrows(intable);
logmsg("Got %i rows\n", NR);
any = fitscolumn_any_type();
dubl = fitscolumn_double_type();
fitstable_add_read_column_struct(intable, dubl, 1, 0, any, racol, TRUE);
fitstable_add_read_column_struct(intable, dubl, 1, sizeof(double), any, deccol, TRUE);
fitstable_use_buffered_reading(intable, 2*sizeof(double), 1000);
R = fitstable_row_size(intable);
rowbuf = buffered_read_new(R, 1000, NR, refill_rowbuffer, intable);
if (fitstable_read_extension(intable, 1)) {
ERROR("Failed to find RA and DEC columns (called \"%s\" and \"%s\" in the FITS file)", racol, deccol);
exit(-1);
}
for (r=0; r<NR; r++) {
int hp = -1;
double ra, dec;
int j;
double* rd;
void* rowdata;
void* rdata;
if (r && ((r % 100000) == 0)) {
logmsg("Reading row %i of %i\n", r, NR);
}
//printf("reading RA,Dec for row %i\n", r);
rd = fitstable_next_struct(intable);
ra = rd[0];
dec = rd[1];
logverb("row %i: ra,dec %g,%g\n", r, ra, dec);
if (margin == 0) {
hp = radecdegtohealpix(ra, dec, nside);
logverb(" --> healpix %i\n", hp);
} else {
double xyz[3];
anbool gotit = FALSE;
double d2;
if (!hps)
hps = il_new(4);
radecdeg2xyzarr(ra, dec, xyz);
for (j=0; j<NHP; j++) {
d2 = distsq(xyz, mincaps[j].xyz, 3);
if (d2 <= mincaps[j].r2) {
logverb(" -> in mincap %i (dist %g vs %g)\n", j, sqrt(d2), sqrt(mincaps[j].r2));
il_append(hps, j);
gotit = TRUE;
break;
}
}
if (!gotit) {
for (j=0; j<NHP; j++) {
d2 = distsq(xyz, maxcaps[j].xyz, 3);
if (d2 <= maxcaps[j].r2) {
logverb(" -> in maxcap %i (dist %g vs %g)\n", j, sqrt(d2), sqrt(maxcaps[j].r2));
if (healpix_within_range_of_xyz(j, nside, xyz, margin)) {
logverb(" -> and within range.\n");
il_append(hps, j);
}
}
}
}
//hps = healpix_rangesearch_radec(ra, dec, margin, nside, hps);
logverb(" --> healpixes: [");
for (j=0; j<il_size(hps); j++)
logverb(" %i", il_get(hps, j));
logverb(" ]\n");
}
//printf("Reading rowdata for row %i\n", r);
rowdata = buffered_read(rowbuf);
assert(rowdata);
j=0;
while (1) {
if (hps) {
if (j >= il_size(hps))
break;
hp = il_get(hps, j);
j++;
}
assert(hp < NHP);
assert(hp >= 0);
if (!outtables[hp]) {
char* outfn;
fitstable_t* out;
// MEMLEAK the output filename. You'll live.
asprintf_safe(&outfn, outfnpat, hp);
logmsg("Opening output file \"%s\"...\n", outfn);
out = fitstable_open_for_writing(outfn);
if (!out) {
ERROR("Failed to open output table \"%s\"", outfn);
exit(-1);
}
// Set the output table structure.
if (cols) {
fitstable_add_fits_columns_as_struct3(intable, out, cols, 0);
} else
fitstable_add_fits_columns_as_struct2(intable, out);
if (backref) {
tfits_type i16type;
tfits_type i32type;
// R = fitstable_row_size(intable);
int off = R;
i16type = fitscolumn_i16_type();
i32type = fitscolumn_i32_type();
fitstable_add_read_column_struct(out, i16type, 1, off,
i16type, "backref_file", TRUE);
off += sizeof(int16_t);
fitstable_add_read_column_struct(out, i32type, 1, off,
i32type, "backref_index", TRUE);
}
//printf("Output table:\n");
//fitstable_print_columns(out);
if (fitstable_write_primary_header(out) ||
fitstable_write_header(out)) {
ERROR("Failed to write output file headers for \"%s\"", outfn);
exit(-1);
}
outtables[hp] = out;
}
if (backref) {
int16_t brfile;
int32_t brind;
if (!padrowdata) {
padrowdata = malloc(R + sizeof(int16_t) + sizeof(int32_t));
assert(padrowdata);
}
// convert to FITS endian
brfile = htons(i);
brind = htonl(r);
// add backref data to rowdata
memcpy(padrowdata, rowdata, R);
memcpy(padrowdata + R, &brfile, sizeof(int16_t));
memcpy(padrowdata + R + sizeof(int16_t), &brind, sizeof(int32_t));
rdata = padrowdata;
} else {
rdata = rowdata;
}
if (cols) {
if (fitstable_write_struct_noflip(outtables[hp], rdata)) {
ERROR("Failed to copy a row of data from input table \"%s\" to output healpix %i", infn, hp);
}
} else {
if (fitstable_write_row_data(outtables[hp], rdata)) {
ERROR("Failed to copy a row of data from input table \"%s\" to output healpix %i", infn, hp);
}
}
if (!hps)
break;
}
if (hps)
il_remove_all(hps);
}
buffered_read_free(rowbuf);
// wack... buffered_read_free() just frees its internal buffer,
// not the "rowbuf" struct itself.
// who wrote this crazy code? Oh, me of 5 years ago. Jerk.
free(rowbuf);
fitstable_close(intable);
il_free(hps);
if (tempfn) {
logverb("Removing temp file %s\n", tempfn);
if (unlink(tempfn)) {
SYSERROR("Failed to unlink() temp file \"%s\"", tempfn);
}
tempfn = NULL;
}
// fix headers so that the files are valid at this point.
for (ii=0; ii<NHP; ii++) {
if (!outtables[ii])
continue;
off_t offset = ftello(outtables[ii]->fid);
if (fitstable_fix_header(outtables[ii])) {
ERROR("Failed to fix header for healpix %i after reading input file \"%s\"", ii, originfn);
exit(-1);
}
fseeko(outtables[ii]->fid, offset, SEEK_SET);
}
if (padrowdata) {
free(padrowdata);
padrowdata = NULL;
}
}
for (i=0; i<NHP; i++) {
if (!outtables[i])
continue;
if (fitstable_fix_header(outtables[i]) ||
fitstable_fix_primary_header(outtables[i]) ||
fitstable_close(outtables[i])) {
ERROR("Failed to close output table for healpix %i", i);
exit(-1);
}
}
free(outtables);
sl_free2(infns);
sl_free2(cols);
free(mincaps);
free(maxcaps);
return 0;
}