void mapBoxForCenterVariant(struct vcfRecord *rec, struct hvGfx *hvg, struct track *tg,
int xOff, int yOff, int width)
/* Special mouseover for center variant */
{
struct dyString *dy = dyStringNew(0);
unsigned int chromStartMap = vcfRecordTrimIndelLeftBase(rec);
unsigned int chromEndMap = vcfRecordTrimAllelesRight(rec);
gtSummaryString(rec, dy);
dyStringAppend(dy, " Haplotypes sorted on ");
char *centerChrom = cartOptionalStringClosestToHome(cart, tg->tdb, FALSE, "centerVariantChrom");
if (centerChrom == NULL || !sameString(chromName, centerChrom))
dyStringAppend(dy, "middle variant by default. ");
else
dyStringAppend(dy, "this variant. ");
dyStringAppend(dy, "To anchor sorting to a different variant, click on that variant and "
"then click on the 'Use this variant' button below the variant name.");
const double scale = scaleForPixels(width);
int x1 = round((double)(rec->chromStart-winStart)*scale) + xOff;
int x2 = round((double)(rec->chromEnd-winStart)*scale) + xOff;
int w = x2-x1;
if (w <= 1)
{
x1--;
w = 3;
}
mapBoxHgcOrHgGene(hvg, chromStartMap, chromEndMap, x1, yOff, w, tg->height, tg->track,
rec->name, dy->string, NULL, TRUE, NULL);
}
enum wiggleGridOptEnum wigFetchTransformFuncWithCart(struct cart *theCart,
struct trackDb *tdb, char *name,char **optString)
/* transformFunc - none by default **********************************/
{
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *transformFunc;
enum wiggleTransformFuncEnum ret = wiggleTransformFuncNone;
char * tdbDefault = trackDbSettingClosestToHome(tdb, TRANSFORMFUNC);
transformFunc = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel,
TRANSFORMFUNC));
if ((transformFunc == NULL) && (tdbDefault != NULL))
transformFunc = cloneString(tdbDefault);
if (optString && transformFunc)
*optString = cloneString(transformFunc);
if (transformFunc)
{
ret = wiggleTransformFuncToEnum(transformFunc);
freeMem(transformFunc);
}
return((enum wiggleGridOptEnum)ret);
}
enum wiggleAggregateFunctionEnum wigFetchAggregateFunctionWithCart(struct cart *theCart,
struct trackDb *tdb, char *name, char **optString)
/****** windowingFunction - Whiskers by default **************************/
{
char *Default = wiggleAggregateFunctionEnumToString(wiggleAggregateTransparent);
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *aggregateFunction = NULL;
enum wiggleAggregateFunctionEnum ret;
aggregateFunction = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel,
AGGREGATE));
/* If windowingFunction is a string, it came from the cart, otherwise
* see if it is specified in the trackDb option, finally
* return the default.
*/
if (!aggregateFunction)
{
char * tdbDefault =
trackDbSettingClosestToHomeOrDefault(tdb, AGGREGATE, Default);
freeMem(aggregateFunction);
if (differentWord(Default,tdbDefault))
aggregateFunction = cloneString(tdbDefault);
else
{
struct hashEl *hel;
/* no aggregateFunction from trackDb, maybe it is in tdb->settings
* (custom tracks keep settings here)
*/
aggregateFunction = cloneString(Default);
if ((tdb->settings != (char *)NULL) &&
(tdb->settingsHash != (struct hash *)NULL))
{
if ((hel =hashLookup(tdb->settingsHash, AGGREGATE)) !=NULL)
if (differentWord(Default,(char *)hel->val))
{
freeMem(aggregateFunction);
aggregateFunction = cloneString((char *)hel->val);
}
}
}
}
if (optString)
*optString = cloneString(aggregateFunction);
ret = wiggleAggregateFunctionStringToEnum(aggregateFunction);
freeMem(aggregateFunction);
return(ret);
} /* enum wiggleWindowingEnum wigFetchWindowingFunctionWithCart() */
void wigFetchYLineMarkValueWithCart(struct cart *theCart,struct trackDb *tdb, char *name, double *tDbYMark )
/* y= marker line value
* User requested value is defined in the cart
* A Default value can be defined as
* yLineMark declaration from trackDb
*****************************************************************************/
{
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *yLineMarkValue = NULL; /* string from cart */
double yLineValue; /* value from cart or trackDb */
char * tdbDefault = cloneString(
trackDbSettingClosestToHomeOrDefault(tdb, YLINEMARK, "NONE") );
if (sameWord("NONE",tdbDefault))
{
struct hashEl *hel;
/* no yLineMark from trackDb, maybe it is in tdb->settings
* (custom tracks keep settings here)
*/
if ((tdb->settings != (char *)NULL) &&
(tdb->settingsHash != (struct hash *)NULL))
{
if ((hel = hashLookup(tdb->settingsHash, YLINEMARK)) != NULL)
{
freeMem(tdbDefault);
tdbDefault = cloneString((char *)hel->val);
}
}
}
/* If nothing else, it is zero */
yLineValue = 0.0;
/* Let's see if a value is available in the cart */
yLineMarkValue = cartOptionalStringClosestToHome(theCart, tdb, parentLevel, YLINEMARK);
/* if yLineMarkValue is non-Null, it is the requested value */
if (yLineMarkValue)
yLineValue = atof(yLineMarkValue);
else /* See if a default line is specified in the trackDb.ra file */
if (differentWord("NONE",tdbDefault))
yLineValue = atof(tdbDefault);
/* If possible to return */
if (tDbYMark)
*tDbYMark = yLineValue;
freeMem(tdbDefault);
} /* void wigFetchYLineMarkValueWithCart() */
boolean wigFetchDoNegativeWithCart(struct cart *theCart, struct trackDb *tdb, char *name,char **optString)
/* doNegative - false by default **********************************/
{
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *doNegativeDefault = trackDbSettingClosestToHome(tdb, DONEGATIVEMODE);
char *doNegative = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel, DONEGATIVEMODE));
if ((doNegative == NULL) && (doNegativeDefault != NULL))
doNegative = cloneString(doNegativeDefault);
if (doNegative == NULL)
return FALSE;
return sameString(doNegative, "1") || sameString(doNegative, "on");
}
enum wiggleSmoothingEnum wigFetchSmoothingWindowWithCart(struct cart *theCart, struct trackDb *tdb,
char *name, char **optString)
/****** smoothingWindow - OFF by default **************************/
{
char * Default = wiggleSmoothingEnumToString(wiggleSmoothingOff);
boolean parentLevel = isNameAtParentLevel(tdb,name);
char * smoothingWindow = NULL;
enum wiggleSmoothingEnum ret;
smoothingWindow = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel,
SMOOTHINGWINDOW));
if (!smoothingWindow) /* if nothing from the Cart, check trackDb/settings */
{
char * tdbDefault =
trackDbSettingClosestToHomeOrDefault(tdb, SMOOTHINGWINDOW, Default);
if (differentWord(Default,tdbDefault))
smoothingWindow = cloneString(tdbDefault);
else
{
struct hashEl *hel;
/* no smoothingWindow from trackDb, maybe it is in tdb->settings
* (custom tracks keep settings here)
*/
smoothingWindow = cloneString(Default);
if ((tdb->settings != (char *)NULL) &&
(tdb->settingsHash != (struct hash *)NULL))
{
if ((hel = hashLookup(tdb->settingsHash, SMOOTHINGWINDOW)) != NULL)
if (differentWord(Default,(char *)hel->val))
{
freeMem(smoothingWindow);
smoothingWindow = cloneString((char *)hel->val);
}
}
}
}
if (optString)
*optString = cloneString(smoothingWindow);
ret = wiggleSmoothingStringToEnum(smoothingWindow);
freeMem(smoothingWindow);
return(ret);
} /* enum wiggleSmoothingEnum wigFetchSmoothingWindowWithCart() */
enum wiggleScaleOptEnum wigFetchAutoScaleWithCart(struct cart *theCart, struct trackDb *tdb,
char *name, char **optString)
/****** autoScale - off by default ***************************************/
{
char *autoString = wiggleScaleEnumToString(wiggleScaleAuto);
char *manualString = wiggleScaleEnumToString(wiggleScaleManual);
char *Default = manualString;
char *notDefault = autoString;
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *autoScale = NULL;
enum wiggleScaleOptEnum ret;
autoScale = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel, AUTOSCALE));
if (!autoScale) /* if nothing from the Cart, check trackDb/settings */
{
/* It may be the autoScale=on/off situation from custom tracks */
char * tdbDefault = trackDbSettingClosestToHomeOrDefault(tdb, AUTOSCALE, "NONE");
if (sameWord(tdbDefault,"on"))
autoScale = cloneString(autoString);
else if (sameWord(tdbDefault,"off"))
autoScale = cloneString(manualString);
else
{
if (isCustomTrack(tdb->track))
// backwards defaults for custom tracks, autoScale on
autoScale = wigCheckBinaryOption(tdb,notDefault,Default,
AUTOSCALEDEFAULT, AUTOSCALE);
else
autoScale = wigCheckBinaryOption(tdb,Default,notDefault,
AUTOSCALEDEFAULT, AUTOSCALE);
}
}
if (optString)
*optString = cloneString(autoScale);
ret = wiggleScaleStringToEnum(autoScale);
freeMem(autoScale);
return(ret);
} /* enum wiggleScaleOptEnum wigFetchAutoScaleWithCart() */
enum wiggleYLineMarkEnum wigFetchYLineMarkWithCart(struct cart *theCart, struct trackDb *tdb,
char *name, char **optString)
/* yLineMark - off by default **********************************/
{
char *Default = wiggleYLineMarkEnumToString(wiggleYLineMarkOff);
char *notDefault = wiggleYLineMarkEnumToString(wiggleYLineMarkOn);
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *yLineMark = NULL;
enum wiggleYLineMarkEnum ret;
yLineMark = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel, YLINEONOFF));
if (!yLineMark) /* if nothing from the Cart, check trackDb/settings */
yLineMark = wigCheckBinaryOption(tdb,Default,notDefault,YLINEONOFF,
(char *)NULL);
if (optString)
*optString = cloneString(yLineMark);
ret = wiggleYLineMarkStringToEnum(yLineMark);
freeMem(yLineMark);
return(ret);
} /* enum wiggleYLineMarkEnum wigFetchYLineMarkWithCart() */
enum wiggleGraphOptEnum wigFetchGraphTypeWithCart(struct cart *theCart, struct trackDb *tdb,
char *name, char **optString)
/****** graphType - line(points) or bar graph *****************************/
{
char *Default = wiggleGraphEnumToString(wiggleGraphBar);
char *notDefault = wiggleGraphEnumToString(wiggleGraphPoints);
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *graphType = NULL;
enum wiggleGraphOptEnum ret;
graphType = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel, LINEBAR));
if (!graphType) /* if nothing from the Cart, check trackDb/settings */
graphType = wigCheckBinaryOption(tdb,Default,notDefault,GRAPHTYPEDEFAULT,
GRAPHTYPE);
if (optString)
*optString = cloneString(graphType);
ret = wiggleGraphStringToEnum(graphType);
freeMem(graphType);
return(ret);
} /* enum wiggleGraphOptEnum wigFetchGraphTypeWithCart() */
enum wiggleGridOptEnum wigFetchHorizontalGridWithCart(struct cart *theCart, struct trackDb *tdb,
char *name,char **optString)
/* horizontalGrid - off by default **********************************/
{
char *Default = wiggleGridEnumToString(wiggleHorizontalGridOff);
char *notDefault = wiggleGridEnumToString(wiggleHorizontalGridOn);
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *horizontalGrid = NULL;
enum wiggleGridOptEnum ret;
horizontalGrid = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel, HORIZGRID));
if (!horizontalGrid) /* if it is NULL */
horizontalGrid = wigCheckBinaryOption(tdb,Default,notDefault,GRIDDEFAULT,
HORIZGRID);
if (optString)
*optString = cloneString(horizontalGrid);
ret = wiggleGridStringToEnum(horizontalGrid);
freeMem(horizontalGrid);
return(ret);
} /* enum wiggleGridOptEnum wigFetchHorizontalGridWithCart() */
static int getCenterVariantIx(struct track *tg, int seqStart, int seqEnd,
struct vcfRecord *records)
// If the user hasn't specified a local variant/position to use as center,
// just use the median variant in window.
{
int defaultIx = (slCount(records)-1) / 2;
char *centerChrom = cartOptionalStringClosestToHome(cart, tg->tdb, FALSE, "centerVariantChrom");
if (centerChrom != NULL && sameString(chromName, centerChrom))
{
int centerPos = cartUsualIntClosestToHome(cart, tg->tdb, FALSE, "centerVariantPos", -1);
int winSize = seqEnd - seqStart;
if (centerPos > (seqStart - winSize) && centerPos < (seqEnd + winSize))
{
int i;
struct vcfRecord *rec;
for (rec = records, i = 0; rec != NULL; rec = rec->next, i++)
if (rec->chromStart >= centerPos)
return i;
return i-1;
}
}
return defaultIx;
}
enum wiggleGridOptEnum wigFetchAlwaysZeroWithCart(struct cart *theCart,
struct trackDb *tdb, char *name,char **optString)
/* alwaysZero - off by default **********************************/
{
boolean parentLevel = isNameAtParentLevel(tdb,name);
char *alwaysZero;
enum wiggleAlwaysZeroEnum ret = wiggleAlwaysZeroOff;
char * tdbDefault = trackDbSettingClosestToHome(tdb, ALWAYSZERO);
alwaysZero = cloneString(cartOptionalStringClosestToHome(theCart, tdb, parentLevel, ALWAYSZERO));
if ((alwaysZero == NULL) && (tdbDefault != NULL))
alwaysZero = cloneString(tdbDefault);
if (optString && alwaysZero)
*optString = cloneString(alwaysZero);
if (alwaysZero)
{
ret = wiggleAlwaysZeroToEnum(alwaysZero);
freeMem(alwaysZero);
}
return((enum wiggleGridOptEnum)ret);
}
void wigFetchMinMaxYWithCart(struct cart *theCart, struct trackDb *tdb, char *name,
double *retMin, double *retMax, double *retAbsMin, double *retAbsMax,
int wordCount, char **words)
/*****************************************************************************
* Min, Max Y viewing limits
* Absolute limits are defined on the trackDb type line for wiggle,
* or MIN_LIMIT / MAX_LIMIT trackDb settings for bedGraph
* User requested limits are defined in the cart
* Default opening display limits are optionally defined with the
* defaultViewLimits or viewLimits declaration from trackDb
*****************************************************************************/
{
boolean isBedGraph = (wordCount == 0 || sameString(words[0],"bedGraph"));
// Determine absolute min and max. Someday hgTrackDb will enforce inclusion of data
// range settings, but until then, there is some circular logic where either one
// can provide a default for the other if the other is missing.
double absMax = 0.0, absMin = 0.0;
boolean missingAbsMin = FALSE, missingAbsMax = FALSE;
if (isBedGraph)
{
char *tdbMin = trackDbSettingClosestToHomeOrDefault(tdb, MIN_LIMIT, NULL);
char *tdbMax = trackDbSettingClosestToHomeOrDefault(tdb, MAX_LIMIT, NULL);
if (tdbMin == NULL)
missingAbsMin = TRUE;
else
absMin = sqlDouble(tdbMin);
if (tdbMax == NULL)
missingAbsMax = TRUE;
else
absMax = sqlDouble(tdbMax);
}
else
{
// Wiggle: get min and max from type setting, which has been chopped into words and wordCount:
// type wig <min> <max>
if (wordCount >= 3)
absMax = atof(words[2]);
else
missingAbsMax = TRUE;
if (wordCount >= 2)
absMin = atof(words[1]);
else
missingAbsMin = TRUE;
}
correctOrder(absMin, absMax);
// Determine current minY,maxY.
// Precedence: 1. cart; 2. defaultViewLimits; 3. viewLimits;
// 4. absolute [which may need to default to #2 or #3!]
boolean parentLevel = isNameAtParentLevel(tdb, name);
char *cartMinStr = cartOptionalStringClosestToHome(theCart, tdb, parentLevel, MIN_Y);
char *cartMaxStr = cartOptionalStringClosestToHome(theCart, tdb, parentLevel, MAX_Y);
double cartMin = 0.0, cartMax = 0.0;
if(cartMinStr)
*retMin = atof(cartMinStr);
if(cartMaxStr)
*retMax = atof(cartMaxStr);
if (cartMinStr && cartMaxStr)
correctOrder(*retMin, *retMax);
// If it weren't for the the allowance for missing data range values,
// we could set retAbs* and be done here.
if(cartMinStr)
cartMin = *retMin;
if(cartMaxStr)
cartMax = *retMax;
// Get trackDb defaults, and resolve missing wiggle data range if necessary.
char *defaultViewLimits = trackDbSettingClosestToHomeOrDefault(tdb, DEFAULTVIEWLIMITS, NULL);
if (defaultViewLimits == NULL)
defaultViewLimits = trackDbSettingClosestToHomeOrDefault(tdb, VIEWLIMITS, NULL);
if (defaultViewLimits != NULL)
{
double viewLimitMin = 0.0, viewLimitMax = 0.0;
parseColonRange(defaultViewLimits, &viewLimitMin, &viewLimitMax);
*retMin = viewLimitMin;
*retMax = viewLimitMax;
if (missingAbsMax)
absMax = viewLimitMax;
if (missingAbsMin)
absMin = viewLimitMin;
}
else if (missingAbsMin || missingAbsMax)
{
if (isBedGraph)
{
absMin = DEFAULT_MIN_BED_GRAPH;
absMax = DEFAULT_MAX_BED_GRAPH;
}
else
{
absMin = DEFAULT_MIN_Yv;
absMax = DEFAULT_MAX_Yv;
}
*retMin = absMin;
*retMax = absMax;
}
else
{
*retMin = absMin;
*retMax = absMax;
}
if (retAbsMin)
*retAbsMin = absMin;
if (retAbsMax)
*retAbsMax = absMax;
// After the dust settles from tdb's trackDb settings, now see if composite view
// settings from tdb's parents override that stuff anyway:
viewLimitsCompositeOverride(tdb, name, retMin, retMax, retAbsMin, retAbsMax);
// And as the final word after composite override, reset retMin and retMax if from cart:
if (cartMinStr)
*retMin = cartMin;
if (cartMaxStr)
*retMax = cartMax;
} /* void wigFetchMinMaxYWithCart() */
static void pubsLoadKeywordYearItems(struct track *tg)
/* load items that fulfill keyword and year filter */
{
pubsParseClassColors();
struct sqlConnection *conn = hAllocConn(database);
char *keywords = cartOptionalStringClosestToHome(cart, tg->tdb, FALSE, "pubsFilterKeywords");
char *yearFilter = cartOptionalStringClosestToHome(cart, tg->tdb, FALSE, "pubsFilterYear");
char *publFilter = cartOptionalStringClosestToHome(cart, tg->tdb, FALSE, "pubsFilterPublisher");
char *articleTable = pubsArticleTable(tg);
if(sameOk(yearFilter, "anytime"))
yearFilter = NULL;
if(sameOk(publFilter, "all"))
publFilter = NULL;
if(isNotEmpty(keywords))
keywords = makeMysqlMatchStr(keywords);
if (isEmpty(yearFilter) && isEmpty(keywords) && isEmpty(publFilter))
{
loadGappedBed(tg);
}
else
{
// put together an "extra" query to hExtendedRangeQuery that removes articles
// without the keywords specified in hgTrackUi
char *oldLabel = tg->longLabel;
tg->longLabel = catTwoStrings(oldLabel, " (filter activated)");
freeMem(oldLabel);
char **row;
struct linkedFeatures *lfList = NULL;
struct trackDb *tdb = tg->tdb;
int scoreMin = atoi(trackDbSettingClosestToHomeOrDefault(tdb, "scoreMin", "0"));
int scoreMax = atoi(trackDbSettingClosestToHomeOrDefault(tdb, "scoreMax", "1000"));
boolean useItemRgb = bedItemRgb(tdb);
char *extra = NULL;
struct dyString *extraDy = dyStringNew(0);
struct hash *articleIds = searchForKeywords(conn, articleTable, keywords);
if (!sameWord(tg->table, "pubsBlat"))
// new table schema: filter fields are on main bed table
{
if (isNotEmpty(yearFilter))
sqlDyStringPrintfWithSep(extraDy, " AND ", " year >= '%s'", yearFilter);
if (isNotEmpty(publFilter))
sqlDyStringPrintfWithSep(extraDy, " AND ", " publisher = '%s'", publFilter);
}
else
// old table schema, filter by doing a join on article table
{
if(isNotEmpty(yearFilter))
sqlDyStringPrintfFrag(extraDy, "name IN (SELECT articleId FROM %s WHERE year>='%s')", articleTable, \
yearFilter);
}
if (extraDy->stringSize > 0)
extra = extraDy->string;
else
extra = NULL;
int rowOffset = 0;
struct sqlResult *sr = hExtendedRangeQuery(conn, tg->table, chromName, winStart, winEnd, extra,
FALSE, NULL, &rowOffset);
freeDyString(&extraDy);
while ((row = sqlNextRow(sr)) != NULL)
{
struct bed *bed = bedLoad12(row+rowOffset);
if (articleIds==NULL || hashFindVal(articleIds, bed->name))
slAddHead(&lfList, bedMungToLinkedFeatures(&bed, tdb, 12, scoreMin, scoreMax, useItemRgb));
}
sqlFreeResult(&sr);
slReverse(&lfList);
slSort(&lfList, linkedFeaturesCmp);
tg->items = lfList;
}
hFreeConn(&conn);
}
static struct pubsExtra *pubsMakeExtra(struct track* tg, char *articleTable,
struct sqlConnection* conn, struct linkedFeatures* lf)
/* bad solution: a function that is called before the extra field is
* accessed and that fills it from a sql query. Will need to redo this like gencode,
* drawing from atom, variome and bedLoadN or bedDetails */
{
char query[LARGEBUF];
struct sqlResult *sr = NULL;
char **row = NULL;
struct pubsExtra *extra = NULL;
if (sameWord(tg->table, "pubsBlat"))
// legacy table format where bed-like table does not includ title but has to pull it out from 2nd table
sqlSafef(query, sizeof(query), "SELECT firstAuthor, year, title FROM %s WHERE articleId = '%s'",
articleTable, lf->name);
else
// new table format
sqlSafef(query, sizeof(query), "SELECT firstAuthor, year, title, impact, classes FROM %s "
"WHERE chrom = '%s' and chromStart = '%d' and name='%s'", tg->table, chromName, lf->start, lf->name);
sr = sqlGetResult(conn, query);
if ((row = sqlNextRow(sr)) != NULL)
{
char *firstAuthor = row[0];
char *year = row[1];
char *title = row[2];
char *impact = NULL;
char *classes = NULL;
extra = needMem(sizeof(struct pubsExtra));
extra->label = pubsFeatureLabel(firstAuthor, year);
if (isEmpty(title))
extra->mouseOver = extra->label;
else
extra->mouseOver = cloneString(title);
extra->color = NULL;
extra->shade = -1;
if (!sameWord(tg->table, "pubsBlat"))
{
impact = row[3];
classes = row[4];
if (!isEmpty(impact))
{
char *colorBy = cartOptionalStringClosestToHome(cart, tg->tdb, FALSE, "pubsColorBy");
if ((colorBy==NULL) || strcmp(colorBy,"topic")==0)
{
char *classCopy = classes;
char *mainClass = cloneNextWordByDelimiter(&classes, ',');
classes = classCopy;
if (mainClass!=NULL)
{
struct rgbColor *col = (struct rgbColor*) hashFindVal(pubsClassColors, mainClass);
extra->color = col;
// add class to mouseover text
struct dyString *mo = dyStringNew(0);
dyStringAppend(mo, extra->mouseOver);
dyStringAppend(mo, " (categories: ");
dyStringAppend(mo, classes);
dyStringAppend(mo, ")");
freeMem(extra->mouseOver);
extra->mouseOver = dyStringContents(mo);
}
}
else
{
if (sameString(colorBy,"impact"))
{
int impInt = atoi(impact);
if (impInt<=1)
extra->color = &impact1Color;
else if (impInt<=3)
extra->color = &impact2Color;
else if (impInt<=10)
extra->color = &impact3Color;
else
extra->color = &impact4Color;
// add impact to mouseover text
struct dyString *mo = dyStringNew(0);
dyStringAppend(mo, extra->mouseOver);
dyStringAppend(mo, " (impact ");
dyStringAppend(mo, impact);
dyStringAppend(mo, ")");
freeMem(extra->mouseOver);
extra->mouseOver = dyStringContents(mo);
}
if (sameString(colorBy,"year"))
{
int relYear = (atoi(year)-1990);
extra->shade = min(relYear/3, 10);
//extra->color = shadesOfGray[yearShade];
}
}
}
}
}
sqlFreeResult(&sr);
return extra;
}