int
curses_ui()
{
int err;
err = ui_init();
if (err == -1) {
return (-1);
}
file_list.dir_name = malloc(MAXPATHLEN + 1);
if (!file_list.dir_name) {
mvwprintw(main_win, 0, 1, "ERROR: Can't initialize dir_name.");
wrefresh(main_win);
return (-1);
}
err = first_run_file_list(main_win);
if (err == -1) {
mvwprintw(main_win, 0, 1, "ERROR: Can't initialize file list.");
wrefresh(main_win);
return (-1);
}
sock_fd = get_client_socket();
err = pthread_create(&receiver_thread, rcv_attr, ui_socket_receiver, rcv_arg);
if (err != 0) {
mvwprintw(main_win, 0, 1, "ERROR: receiver thread");
wrefresh(main_win);
return (-1);
}
show_files(main_win);
curses_loop();
// wait for receiver_thread if alive
if (pthread_kill(receiver_thread, 0) == 0) {
printw("UI: waiting for receiver_thread..");
refresh();
pthread_join(receiver_thread, NULL);
}
free_dir_list();
free(file_list.dir_name);
ui_cleanup();
return (0);
}
int main(int argc, char **argv) {
bool noCurses = false;
char *slash = strrchr(argv[0], '/');
debug = true;
if(!strcmp(slash ? slash + 1 : argv[0], "reader"))
noCurses = true;
load_dump(&dump, argv[1], argv[2], argv[3], argv[4]);
article_file_str = argv[1];
if(!noCurses) {
handler = search_handler;
curses_loop();
} else {
debug("calling reader_loop");
reader_loop();
}
return 0;
}
int main(int argc, char **argv) {
GapIO *io;
int xpos = 0;
int opt;
int lp_mode = 0;
int mode = DISPLAY_QUAL | DISPLAY_CUTOFFS;
extern char *optarg;
contig_t *c;
int cnum = 0;
int read_only = 1;
while ((opt = getopt(argc, argv, "hl:dcCx:e")) != -1) {
switch (opt) {
case '?':
case 'h':
usage();
return 0;
case 'd':
mode |= DISPLAY_DIFFS;
break;
case 'c':
mode |= DISPLAY_CUTOFFS;
break;
case 'C':
mode &= ~DISPLAY_CUTOFFS;
break;
case 'l':
lp_mode = atoi(optarg);
break;
case 'x':
cnum = atoi(optarg)-1;
break;
case 'e':
read_only = 0;
break;
default:
if (opt == ':')
fprintf(stderr, "Missing parameter\n");
else
fprintf(stderr, "Unknown option '%c'\n", opt);
usage();
return 1;
}
}
if (optind == argc) {
usage();
return 1;
}
if (NULL == (io = gio_open(argv[optind], read_only, 0))) {
fprintf(stderr, "Unable to open db: %s\n", argv[1]);
return 1;
}
optind++;
if (optind != argc) {
xpos = atoi(argv[optind]);
}
io->contig_num = cnum;
gio_read_contig(io, cnum, &c);
cache_incr(io, c);
#ifdef TEST_MODE
//test_mode(io, &c, xpos);
test_mode2(io, &c, xpos);
//benchmark(io, &c);
//test_mode3(io, arr(GCardinal, io->contig_order, cnum), xpos);
#endif
if (lp_mode) {
print_output(io, &c, xpos, lp_mode, mode);
gio_close(io);
} else {
init_curses();
curses_loop(io, &c, xpos, mode);
endwin();
if (io->cache && io->debug_level > 0) {
fputs("\n=== cache ===", stderr);
HacheTableStats(io->cache, stderr);
}
gio_close(io);
}
if (!lp_mode) {
printf("\n\n\tg_view:\tShort Read Alignment Viewer, version 1.2.11"SVN_VERS"\n");
printf("\n\tAuthor:\tJames Bonfield ([email protected])\n");
printf("\t\t2007-2011, Wellcome Trust Sanger Institute\n\n");
}
return 0;
}
