void
run_static(metaresultfile *result, genotype_matrix_ptr genotypes, method_data_ptr data, const correction_options &options, const std::string &output_path)
{
resultfile *last_stage = do_common_stages( result, genotypes->get_snp_names( ), options, output_path );
if( last_stage == NULL )
{
return;
}
do_last_stage( last_stage, options, genotypes, data, output_path );
delete last_stage;
}
int check_for_clear_sector(char *hostname,unsigned short port,char *logbook,int flag)
{
struct sockaddr_in rem_addr;
char sendbuf[SENDBUFSIZE];
char *sendbufp;
char getbuf[GETBUFSIZE];
char *reqbuf;
char notfound[100];
int yes;
int total;
int sock;
int flagchoice;
struct timeval w_t;
fd_set read_fd;
int total_fd;
PRINTINFO(MSGSECTOR,debug);
LOGBOOKNOTFOUND(notfound,logbook);
HEAD:
bzero(&w_t,sizeof(w_t));
w_t.tv_sec = TIMEOUT;
w_t.tv_usec = 0;
if(flag == 0)
flagchoice = NOTUPLOADME;
else
flagchoice = UPLOADME;
sock = socket(AF_INET,SOCK_STREAM,IPPROTO_TCP);
if(sock < 0)
{
perror("socket");
exit(1);
}
if(setsockopt(sock,SOL_SOCKET,SO_REUSEADDR,(char *)&yes,sizeof(int)))
{ perror("setsockopt");
close(sock);
exit(1);
}
memset(&(rem_addr.sin_zero),'\0',8);
rem_addr.sin_family = AF_INET;
rem_addr.sin_port = htons(port);
rem_addr.sin_addr.s_addr = get_host_ip(hostname);
if(connect(sock,(const struct sockaddr*)&rem_addr,sizeof(rem_addr)))
{
fprintf(stderr,"[-] Can not Connect to server!\n");
exit(1);
}
sendbufp = make_http_content(flagchoice,logbook);
reqbuf = make_request_header(logbook,boundary,0);
strcpy(sendbuf,reqbuf);
strcat(sendbuf,sendbufp);
if( (send(sock,sendbuf,sizeof(sendbuf),0)) < 0 )
{
perror("send");
exit(-1);
close(sock);
}
FD_ZERO(&read_fd);
FD_SET(sock,&read_fd);
if( (total_fd = select(sock + 1,&read_fd,(fd_set *)NULL,(fd_set *)NULL,&w_t)) < 0)
{
perror("select");
close(sock);
exit(-1);
}
if(FD_ISSET(sock,&read_fd))
{
if( (total = recv(sock,getbuf,sizeof(getbuf),0)) < 1) {
if(errno == EWOULDBLOCK ){
NPRINTINFO(REMDOWN);
PRINTINFO(REMCRASHED,1);
close(sock);
exit(-1);
}
close(sock);
exit(1);
}
if(strstr(getbuf,INVALIDURL)) {
fprintf(stderr,"[-] Invalid URL Bitch, Type the Correct Path\n");
close(sock);
exit(-1);
}
if(strstr(getbuf,AUTHORIZED_DENY)) {
fprintf(stderr,"[-] Type User name and Password for login Bitch\n");
close(sock);
exit(-1);
}
if(strstr(getbuf,notfound)) {
fprintf(stderr,"[-] NO %s LOGBOOK DEFINED BITCH\n",logbook);
close(sock);
exit(-1);
}
if(strstr(getbuf,ASKEDPASS)) {
NPRINTINFO(PASSALERT);
crack_the_code(hostname,port,logbook);
close(sock);
bzero(getbuf,sizeof(getbuf));
goto HEAD;
}
if(strstr(getbuf,ATTOPTERR)) {
PRINTINFO(READOPTION,1);
close(sock);
bzero(getbuf,sizeof(getbuf));
spy_attr_options(hostname,port,logbook);
goto HEAD;
}
if(strstr(getbuf,ATTERR)) {
get_missing_attributes(getbuf,ATTERR,MISSED[globcount].addr);
ATTNOTFOUND(MISSED[globcount].addr);
MAKINGATT (MISSED[globcount].addr);
globcount++;
bzero(getbuf,sizeof(getbuf));
re_check_sector(hostname,port,logbook,flag);
}
if(strstr(getbuf,SECTOR_CLEAR)) {
PRINTINFO(CLEARAREA,1);
close(sock);
do_last_stage(hostname,port,logbook);
we_r_coming(hostname);
}
}
return(1);
}
