bool use_case_1_driver( MPI_Comm comm ,
const std::string& mesh_options )
{
if ( 0 == stk_classic::parallel_machine_rank( comm ) ) {
std::cout << "stk_linsys use case 1" << std::endl
<< " Number Processes = " << stk_classic::parallel_machine_size( comm )
<< std::endl ;
}
//--------------------------------------------------------------------
{
//------------------------------------------------------------------
// Declare the mesh meta data: element blocks and associated fields
stk_classic::mesh::fem::FEMMetaData fem_meta;
fem_meta.FEM_initialize(SpatialDim, stk_classic::mesh::fem::entity_rank_names(SpatialDim) ) ;
stk_classic::mesh::MetaData & mesh_meta_data = stk_classic::mesh::fem::FEMMetaData::get_meta_data(fem_meta);
const stk_classic::mesh::EntityRank element_rank = fem_meta.element_rank();
//--------------------------------
// Element-block declarations typically occur when reading the
// mesh-file meta-data, and thus won't usually appear in application code.
// Declaring the element blocks and associating an element traits
// with each element block.
stk_classic::mesh::Part & universal = fem_meta.universal_part();
stk_classic::mesh::Part & block_hex = fem_meta.declare_part("block_1", element_rank);
stk_classic::mesh::Part & block_quad_shell = fem_meta.declare_part("block_2", element_rank);
stk_classic::mesh::fem::CellTopology hex_top(shards::getCellTopologyData<shards::Hexahedron<> >());
stk_classic::mesh::fem::CellTopology qshell_top(shards::getCellTopologyData<shards::ShellQuadrilateral<> >());
stk_classic::mesh::fem::set_cell_topology( block_hex, hex_top );
stk_classic::mesh::fem::set_cell_topology( block_quad_shell, qshell_top );
//--------------------------------
// Declaring fields of specified types on all nodes:
VectorFieldType & coordinates_field =
stk_classic::mesh::put_field(
fem_meta.declare_field< VectorFieldType >( "coordinates" ) ,
stk_classic::mesh::fem::FEMMetaData::NODE_RANK , universal , SpatialDim );
VectorFieldType & displacements_field =
stk_classic::mesh::put_field(
fem_meta.declare_field< VectorFieldType >( "displacements" ) ,
stk_classic::mesh::fem::FEMMetaData::NODE_RANK , universal , SpatialDim );
//--------------------------------
// Put a scalar "pressure" field on all elements, just to use in demonstrating
// DOF mappings below:
ScalarFieldType & pressure_field =
stk_classic::mesh::put_field(
fem_meta.declare_field< ScalarFieldType >("pressure"),
element_rank, universal);
//--------------------------------
// rotation_field only exists on the shell-nodes:
VectorFieldType & rotation_field =
stk_classic::mesh::put_field(
fem_meta.declare_field< VectorFieldType >( "rotation" ),
stk_classic::mesh::fem::FEMMetaData::NODE_RANK , block_quad_shell , SpatialDim );
//--------------------------------
// Commit (finalize) the meta data. Is now ready to be used
// in the creation and management of mesh bulk data.
fem_meta.commit();
//------------------------------------------------------------------
// stk_classic::mesh::BulkData bulk data conforming to the meta data.
stk_classic::mesh::BulkData mesh_bulk_data( mesh_meta_data , comm );
// In a typical app, the mesh would be read from file at this point.
// But in this use-case, we generate the mesh and initialize
// field data to use-case defined values.
use_case_1_generate_mesh(
mesh_options ,
mesh_bulk_data ,
coordinates_field ,
block_hex ,
block_quad_shell );
use_case_1_initialize_data(
mesh_bulk_data ,
coordinates_field ,
displacements_field ,
rotation_field );
mesh_bulk_data.modification_end();
//------------------------------------------------------------------
const unsigned myProc = mesh_bulk_data.parallel_rank();
stk_classic::linsys::DofMapper dof_mapper(comm);
if (myProc == 0) {
std::cout << "Adding DOF mappings for displacements field for all locally-used "
<< "(owned and shared) nodes..." << std::endl;
}
const stk_classic::mesh::Selector select_used =
fem_meta.locally_owned_part() |
fem_meta.globally_shared_part();
dof_mapper.add_dof_mappings(mesh_bulk_data, select_used,
stk_classic::mesh::fem::FEMMetaData::NODE_RANK, displacements_field);
if (myProc == 0) {
std::cout << "Adding DOF mappings for pressure field for all locally-owned "
<< " elements..." << std::endl;
}
stk_classic::mesh::Selector select_owned = fem_meta.locally_owned_part();
dof_mapper.add_dof_mappings(mesh_bulk_data, select_owned,
element_rank, pressure_field);
dof_mapper.finalize();
if (myProc == 0) {
std::cout << "Global Number of Indices: "
<< dof_mapper.get_fei_VectorSpace()->getGlobalNumIndices() << std::endl;
}
std::vector<stk_classic::mesh::Entity*> nodes;
stk_classic::mesh::get_entities(mesh_bulk_data, stk_classic::mesh::fem::FEMMetaData::NODE_RANK, nodes);
std::vector<stk_classic::mesh::Entity*> elems;
stk_classic::mesh::get_entities(mesh_bulk_data, element_rank, elems);
int global_index = 0;
for(size_t i=0; i<nodes.size(); i+=1000) {
//is the i-th node in the locally-used part? If not, continue.
if (! select_used( nodes[i]->bucket())) continue;
global_index = dof_mapper.get_global_index(stk_classic::mesh::fem::FEMMetaData::NODE_RANK, nodes[i]->identifier(), displacements_field);
std::cout << "Proc " << myProc << ", global index for node " << nodes[i]->identifier()
<< ", field '"<<displacements_field.name()<<"' is: " << global_index << std::endl;
}
for(size_t i=0; i<elems.size(); i+=1000) {
//is the i-th elem in the locally-owned part? If not, continue.
if (!elems[i]->bucket().member(fem_meta.locally_owned_part())) continue;
global_index = dof_mapper.get_global_index(element_rank, elems[i]->identifier(), pressure_field);
std::cout << "Proc " << myProc << ", global index for element " << elems[i]->identifier()
<< ", field '"<<pressure_field.name()<<"' is: " << global_index << std::endl;
}
if (mesh_options == "10x10x10+shell:y") {
return dof_mapper.get_fei_VectorSpace()->getGlobalNumIndices() == 5093;
}
return true;
}
}
void testDofMapper( MPI_Comm comm )
{
//First create and fill MetaData and BulkData objects:
const unsigned bucket_size = 100; //for a real application mesh, bucket_size would be much bigger...
stk::mesh::MetaData meta_data( stk::mesh::fem_entity_rank_names() );
stk::mesh::BulkData bulk_data( meta_data, comm, bucket_size );
fill_utest_mesh_meta_data( meta_data );
fill_utest_mesh_bulk_data( bulk_data );
stk::mesh::Selector selector = meta_data.locally_owned_part() | meta_data.globally_shared_part() ;
std::vector<unsigned> count;
stk::mesh::count_entities(selector, bulk_data, count);
STKUNIT_ASSERT_EQUAL( count[stk::mesh::Element], (unsigned)4 );
STKUNIT_ASSERT_EQUAL( count[stk::mesh::Node], (unsigned)20 );
std::vector<stk::mesh::Entity*> nodes;
stk::mesh::get_entities(bulk_data, stk::mesh::Node, nodes);
stk::mesh::ScalarField* temperature_field =
meta_data.get_field<stk::mesh::ScalarField>("temperature");
//Now we're ready to test the DofMapper:
stk::linsys::DofMapper dof_mapper(comm);
const stk::mesh::Selector select_used = meta_data.locally_owned_part() | meta_data.globally_shared_part();
dof_mapper.add_dof_mappings(bulk_data, select_used,
stk::mesh::Node, *temperature_field);
stk::mesh::EntityRank ent_type;
stk::mesh::EntityId ent_id;
const stk::mesh::FieldBase* field = NULL;
int offset_into_field;
int index = 0;
//DofMapper::get_dof can't be called until after DofMapper::finalize() has
//been called.
//We'll call it now to verify that an exception is thrown:
std::cout << "Testing error condition: " << std::endl;
STKUNIT_ASSERT_THROW(dof_mapper.get_dof(index, ent_type, ent_id, field, offset_into_field), std::runtime_error );
std::cout << "...Completed testing error condition." << std::endl;
dof_mapper.finalize();
//find a node that is in the locally-used part:
size_t i_node = 0;
while(! select_used( nodes[i_node]->bucket() ) && i_node<nodes.size()) {
++i_node;
}
//test the get_global_index function:
stk::mesh::EntityId node_id = nodes[i_node]->identifier();
index = dof_mapper.get_global_index(stk::mesh::Node, node_id, *temperature_field);
STKUNIT_ASSERT_EQUAL( index, (int)(node_id-1) );
std::cout << "Testing error condition: " << std::endl;
//call DofMapper::get_global_index with a non-existent ID and verify that an
//exception is thrown:
STKUNIT_ASSERT_THROW(dof_mapper.get_global_index(stk::mesh::Node, (stk::mesh::EntityId)999999, *temperature_field), std::runtime_error);
std::cout << "...Completed testing error condition." << std::endl;
int numProcs = 1;
numProcs = stk::parallel_machine_size( MPI_COMM_WORLD );
fei::SharedPtr<fei::VectorSpace> fei_vspace = dof_mapper.get_fei_VectorSpace();
int numIndices = fei_vspace->getGlobalNumIndices();
STKUNIT_ASSERT_EQUAL( numIndices, (int)(numProcs*20 - (numProcs-1)*4) );
dof_mapper.get_dof(index, ent_type, ent_id, field, offset_into_field);
STKUNIT_ASSERT_EQUAL( ent_type, nodes[i_node]->entity_rank() );
STKUNIT_ASSERT_EQUAL( ent_id, nodes[i_node]->identifier() );
STKUNIT_ASSERT_EQUAL( field->name() == temperature_field->name(), true );
STKUNIT_ASSERT_EQUAL( offset_into_field, (int)0 );
}