PUBLIC int
move_standard(char *seq,
char *struc,
enum MOVE_TYPE type,
int verbosity_level,
int shifts,
int noLP){
make_pair_matrix();
short int *s0 = encode_sequence(seq, 0);
short int *s1 = encode_sequence(seq, 1);
short int *str = vrna_ptable(struc);
int energy = 0;
switch (type){
case GRADIENT: energy = move_gradient(seq, str, s0, s1, verbosity_level, shifts, noLP); break;
case FIRST: energy = move_first(seq, str, s0, s1, verbosity_level, shifts, noLP); break;
case ADAPTIVE: energy = move_adaptive(seq, str, s0, s1, verbosity_level); break;
}
int i=1;
for (; i<=str[0]; i++) {
if (str[i]==0) struc[i-1]='.';
else if (str[i]>str[str[i]]) struc[i-1]='(';
else struc[i-1]=')';
}
free(s0);
free(s1);
free(str);
return energy;
}
PUBLIC int find_saddle(const char *sequence, const char *struc1, const char *struc2, int max) {
int maxl, maxE, i;
const char *tmp;
move_t *bestpath=NULL;
int dir;
path_fwd = 0;
maxE = INT_MAX - 1;
seq = sequence;
update_fold_params();
make_pair_matrix();
/* nummerically encode sequence */
S = encode_sequence(seq, 0);
S1 = encode_sequence(seq, 1);
maxl=1;
do {
int saddleE;
path_fwd = !path_fwd;
if (maxl>max) maxl=max;
if(path) free(path);
saddleE = find_path_once(struc1, struc2, maxE, maxl);
if (saddleE<maxE) {
maxE = saddleE;
if (bestpath) free(bestpath);
bestpath = path;
path = NULL;
dir = path_fwd;
} else{
free(path);path=NULL;
}
tmp=struc1;
struc1=struc2;
struc2=tmp;
maxl *=2;
} while (maxl<2*max);
free(S); free(S1);
/* (re)set some globals */
path=bestpath;
path_fwd = dir;
return maxE;
}
char *base32(cad_memory_t memory, const char *raw, size_t len) {
size_t sz = b32_size(len);
char *coded = memory.malloc(sz + 1);
memset(coded, 0, sz + 1);
for (size_t i = 0, j = 0; i < len; i += 5, j += 8) {
encode_sequence(&raw[i], min(len - i, (size_t)5), &coded[j]);
}
return coded;
}
void loadReads(Reads* reads)
{
freeReads(reads); // FREE FIRST!
reads->readData = (struct read*)malloc(BATCH_SIZE * sizeof(struct read)); // LOAD SECOND!
for(int i = 0; i < BATCH_SIZE && (reads->current + i < reads->total); i++)
{
struct read* current = &(reads->readData[i]);
reads->ID = reads->ID + 1;
// TODO: THESE LENGTHS SHOULD BE VARIABLE!!!
char seqName1[2048];
char sequence[2048];
char seqName2[2048];
char quality[2048];
// Get the 4 lines of a FASTQ file:
if( fgets(seqName1, 2048, reads->file) == NULL ||
fgets(sequence, 2048, reads->file) == NULL ||
fgets(seqName2, 2048, reads->file) == NULL ||
fgets(quality, 2048, reads->file) == NULL )
{
printf("CRITICAL: FAILED TO READ INPUT!\n");
exit(1);
}
trimSpaces(sequence);
trimSpaces(quality);
trimNs(sequence, quality);
replaceN(sequence);
// Sequence name 1:
current->seqName1 = malloc(strlen(seqName1) + 1);
strcpy(current->seqName1, seqName1);
// Encode sequences:
encode_sequence(current, sequence);
// Also encode reverse_complement of sequences
//encode_sequence_reverse_comp(current, sequence);
// Sequence name 2:
current->seqName2 = malloc(strlen(seqName2) + 1);
strcpy(current->seqName2, seqName2);
//Quality:
current->quality = malloc(strlen(quality) + 1);
strcpy(current->quality, quality);
current->basecontig = NULL;
current->correct_pos = 0;
current->number = reads->ID;
}
}
// create encoded structure
encoded *encode_seq(const char* seq)
{
encoded *res;
res = (encoded*) space(sizeof(encoded));
// inicialize encode_sequence
make_pair_matrix();
res->seq = seq;
res->pt = NULL;
res->s0 = encode_sequence(seq, 0);
res->s1 = encode_sequence(seq, 1);
res->bp_left = 0;
res->bp_right = 0;
res->bp_left2 = 0;
res->bp_right2 = 0;
return res;
}
PUBLIC int
browse_neighs(char *seq,
char *struc,
int verbosity_level,
int shifts,
int noLP,
int (*funct) (struct_en*, struct_en*)){
make_pair_matrix();
short int *s0 = encode_sequence(seq, 0);
short int *s1 = encode_sequence(seq, 1);
short int *str = vrna_ptable(struc);
int res = browse_neighs_pt(seq, str, s0, s1, verbosity_level, shifts, noLP, funct);
free(s0);
free(s1);
free(str);
return res;
}
/*
* Encode SEEK request
*/
static void nfs4_xdr_enc_seek(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_seek_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->sa_fh, &hdr);
encode_seek(xdr, args, &hdr);
encode_nops(&hdr);
}
static int decode_seek(struct xdr_stream *xdr, struct nfs42_seek_res *res)
{
int status;
__be32 *p;
status = decode_op_hdr(xdr, OP_SEEK);
if (status)
return status;
p = xdr_inline_decode(xdr, 4 + 8);
if (unlikely(!p))
goto out_overflow;
res->sr_eof = be32_to_cpup(p++);
p = xdr_decode_hyper(p, &res->sr_offset);
return 0;
out_overflow:
print_overflow_msg(__func__, xdr);
return -EIO;
}
/* Encode a value (contents only, no outer tag) according to a type, and return
* its encoded tag information. */
static asn1_error_code
encode_atype(asn1buf *buf, const void *val, const struct atype_info *a,
taginfo *tag_out, size_t *len_out)
{
asn1_error_code ret;
if (val == NULL)
return ASN1_MISSING_FIELD;
switch (a->type) {
case atype_fn: {
const struct fn_info *fn = a->tinfo;
assert(fn->enc != NULL);
return fn->enc(buf, val, tag_out, len_out);
}
case atype_sequence:
assert(a->tinfo != NULL);
ret = encode_sequence(buf, val, a->tinfo, len_out);
if (ret)
return ret;
tag_out->asn1class = UNIVERSAL;
tag_out->construction = CONSTRUCTED;
tag_out->tagnum = ASN1_SEQUENCE;
break;
case atype_ptr: {
const struct ptr_info *ptr = a->tinfo;
assert(ptr->basetype != NULL);
return encode_atype(buf, LOADPTR(val, ptr), ptr->basetype, tag_out,
len_out);
}
case atype_offset: {
const struct offset_info *off = a->tinfo;
assert(off->basetype != NULL);
return encode_atype(buf, (const char *)val + off->dataoff,
off->basetype, tag_out, len_out);
}
case atype_optional: {
const struct optional_info *opt = a->tinfo;
assert(opt->is_present != NULL);
if (opt->is_present(val))
return encode_atype(buf, val, opt->basetype, tag_out, len_out);
else
return ASN1_OMITTED;
}
case atype_counted: {
const struct counted_info *counted = a->tinfo;
const void *dataptr = (const char *)val + counted->dataoff;
size_t count;
assert(counted->basetype != NULL);
ret = load_count(val, counted, &count);
if (ret)
return ret;
return encode_cntype(buf, dataptr, count, counted->basetype, tag_out,
len_out);
}
case atype_nullterm_sequence_of:
case atype_nonempty_nullterm_sequence_of:
assert(a->tinfo != NULL);
ret = encode_nullterm_sequence_of(buf, val, a->tinfo,
a->type ==
atype_nullterm_sequence_of,
len_out);
if (ret)
return ret;
tag_out->asn1class = UNIVERSAL;
tag_out->construction = CONSTRUCTED;
tag_out->tagnum = ASN1_SEQUENCE;
break;
case atype_tagged_thing: {
const struct tagged_info *tag = a->tinfo;
ret = encode_atype(buf, val, tag->basetype, tag_out, len_out);
if (ret)
return ret;
if (!tag->implicit) {
size_t tlen;
ret = make_tag(buf, tag_out, *len_out, &tlen);
if (ret)
return ret;
*len_out += tlen;
tag_out->construction = tag->construction;
}
tag_out->asn1class = tag->tagtype;
tag_out->tagnum = tag->tagval;
break;
}
case atype_bool:
ret = k5_asn1_encode_bool(buf, load_int(val, a->size), len_out);
if (ret)
return ret;
tag_out->asn1class = UNIVERSAL;
tag_out->construction = PRIMITIVE;
tag_out->tagnum = ASN1_BOOLEAN;
break;
case atype_int:
ret = k5_asn1_encode_int(buf, load_int(val, a->size), len_out);
if (ret)
return ret;
tag_out->asn1class = UNIVERSAL;
tag_out->construction = PRIMITIVE;
tag_out->tagnum = ASN1_INTEGER;
break;
case atype_uint:
ret = k5_asn1_encode_uint(buf, load_uint(val, a->size), len_out);
if (ret)
return ret;
tag_out->asn1class = UNIVERSAL;
tag_out->construction = PRIMITIVE;
tag_out->tagnum = ASN1_INTEGER;
break;
case atype_int_immediate: {
const struct immediate_info *imm = a->tinfo;
ret = k5_asn1_encode_int(buf, imm->val, len_out);
if (ret)
return ret;
tag_out->asn1class = UNIVERSAL;
tag_out->construction = PRIMITIVE;
tag_out->tagnum = ASN1_INTEGER;
break;
}
default:
assert(a->type > atype_min);
assert(a->type < atype_max);
abort();
}
return 0;
}
/*
* Encode ALLOCATE request
*/
static void nfs4_xdr_enc_allocate(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_falloc_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->falloc_fh, &hdr);
encode_allocate(xdr, args, &hdr);
encode_getfattr(xdr, args->falloc_bitmask, &hdr);
encode_nops(&hdr);
}
/*
* Encode DEALLOCATE request
*/
static void nfs4_xdr_enc_deallocate(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_falloc_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->falloc_fh, &hdr);
encode_deallocate(xdr, args, &hdr);
encode_getfattr(xdr, args->falloc_bitmask, &hdr);
encode_nops(&hdr);
}
/*
* Encode SEEK request
*/
static void nfs4_xdr_enc_seek(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_seek_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->sa_fh, &hdr);
encode_seek(xdr, args, &hdr);
encode_nops(&hdr);
}
/*
* Encode LAYOUTSTATS request
*/
static void nfs4_xdr_enc_layoutstats(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_layoutstat_args *args)
{
int i;
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->fh, &hdr);
WARN_ON(args->num_dev > PNFS_LAYOUTSTATS_MAXDEV);
for (i = 0; i < args->num_dev; i++)
encode_layoutstats(xdr, args, &args->devinfo[i], &hdr);
encode_nops(&hdr);
}
static int decode_allocate(struct xdr_stream *xdr, struct nfs42_falloc_res *res)
{
return decode_op_hdr(xdr, OP_ALLOCATE);
}
static int decode_deallocate(struct xdr_stream *xdr, struct nfs42_falloc_res *res)
{
return decode_op_hdr(xdr, OP_DEALLOCATE);
}
static int decode_seek(struct xdr_stream *xdr, struct nfs42_seek_res *res)
{
int status;
__be32 *p;
status = decode_op_hdr(xdr, OP_SEEK);
if (status)
return status;
p = xdr_inline_decode(xdr, 4 + 8);
if (unlikely(!p))
goto out_overflow;
res->sr_eof = be32_to_cpup(p++);
p = xdr_decode_hyper(p, &res->sr_offset);
return 0;
out_overflow:
print_overflow_msg(__func__, xdr);
return -EIO;
}
static int decode_layoutstats(struct xdr_stream *xdr)
{
return decode_op_hdr(xdr, OP_LAYOUTSTATS);
}
/*
* Decode ALLOCATE request
*/
static int nfs4_xdr_dec_allocate(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_falloc_res *res)
{
struct compound_hdr hdr;
int status;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_allocate(xdr, res);
if (status)
goto out;
decode_getfattr(xdr, res->falloc_fattr, res->falloc_server);
out:
return status;
}
/*
* Decode DEALLOCATE request
*/
static int nfs4_xdr_dec_deallocate(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_falloc_res *res)
{
struct compound_hdr hdr;
int status;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_deallocate(xdr, res);
if (status)
goto out;
decode_getfattr(xdr, res->falloc_fattr, res->falloc_server);
out:
return status;
}
/*
* Decode SEEK request
*/
static int nfs4_xdr_dec_seek(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_seek_res *res)
{
struct compound_hdr hdr;
int status;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_seek(xdr, res);
out:
return status;
}
/*
* Decode LAYOUTSTATS request
*/
static int nfs4_xdr_dec_layoutstats(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_layoutstat_res *res)
{
struct compound_hdr hdr;
int status, i;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
WARN_ON(res->num_dev > PNFS_LAYOUTSTATS_MAXDEV);
for (i = 0; i < res->num_dev; i++) {
status = decode_layoutstats(xdr);
if (status)
goto out;
}
out:
res->rpc_status = status;
return status;
}
/*
* Encode ALLOCATE request
*/
static void nfs4_xdr_enc_allocate(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_falloc_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->falloc_fh, &hdr);
encode_allocate(xdr, args, &hdr);
encode_getfattr(xdr, args->falloc_bitmask, &hdr);
encode_nops(&hdr);
}
/*
* Encode COPY request
*/
static void nfs4_xdr_enc_copy(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_copy_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->src_fh, &hdr);
encode_savefh(xdr, &hdr);
encode_putfh(xdr, args->dst_fh, &hdr);
encode_copy(xdr, args, &hdr);
encode_nops(&hdr);
}
/*
* Encode DEALLOCATE request
*/
static void nfs4_xdr_enc_deallocate(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_falloc_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->falloc_fh, &hdr);
encode_deallocate(xdr, args, &hdr);
encode_getfattr(xdr, args->falloc_bitmask, &hdr);
encode_nops(&hdr);
}
/*
* Encode SEEK request
*/
static void nfs4_xdr_enc_seek(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_seek_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->sa_fh, &hdr);
encode_seek(xdr, args, &hdr);
encode_nops(&hdr);
}
/*
* Encode LAYOUTSTATS request
*/
static void nfs4_xdr_enc_layoutstats(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_layoutstat_args *args)
{
int i;
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->fh, &hdr);
WARN_ON(args->num_dev > PNFS_LAYOUTSTATS_MAXDEV);
for (i = 0; i < args->num_dev; i++)
encode_layoutstats(xdr, args, &args->devinfo[i], &hdr);
encode_nops(&hdr);
}
/*
* Encode CLONE request
*/
static void nfs4_xdr_enc_clone(struct rpc_rqst *req,
struct xdr_stream *xdr,
struct nfs42_clone_args *args)
{
struct compound_hdr hdr = {
.minorversion = nfs4_xdr_minorversion(&args->seq_args),
};
encode_compound_hdr(xdr, req, &hdr);
encode_sequence(xdr, &args->seq_args, &hdr);
encode_putfh(xdr, args->src_fh, &hdr);
encode_savefh(xdr, &hdr);
encode_putfh(xdr, args->dst_fh, &hdr);
encode_clone(xdr, args, &hdr);
encode_getfattr(xdr, args->dst_bitmask, &hdr);
encode_nops(&hdr);
}
static int decode_allocate(struct xdr_stream *xdr, struct nfs42_falloc_res *res)
{
return decode_op_hdr(xdr, OP_ALLOCATE);
}
static int decode_write_response(struct xdr_stream *xdr,
struct nfs42_write_res *res)
{
__be32 *p;
p = xdr_inline_decode(xdr, 4 + 8 + 4);
if (unlikely(!p))
goto out_overflow;
/*
* We never use asynchronous mode, so warn if a server returns
* a stateid.
*/
if (unlikely(*p != 0)) {
pr_err_once("%s: server has set unrequested "
"asynchronous mode\n", __func__);
return -EREMOTEIO;
}
p++;
p = xdr_decode_hyper(p, &res->count);
res->verifier.committed = be32_to_cpup(p);
return decode_verifier(xdr, &res->verifier.verifier);
out_overflow:
print_overflow_msg(__func__, xdr);
return -EIO;
}
static int decode_copy_requirements(struct xdr_stream *xdr,
struct nfs42_copy_res *res) {
__be32 *p;
p = xdr_inline_decode(xdr, 4 + 4);
if (unlikely(!p))
goto out_overflow;
res->consecutive = be32_to_cpup(p++);
res->synchronous = be32_to_cpup(p++);
return 0;
out_overflow:
print_overflow_msg(__func__, xdr);
return -EIO;
}
static int decode_copy(struct xdr_stream *xdr, struct nfs42_copy_res *res)
{
int status;
status = decode_op_hdr(xdr, OP_COPY);
if (status == NFS4ERR_OFFLOAD_NO_REQS) {
status = decode_copy_requirements(xdr, res);
if (status)
return status;
return NFS4ERR_OFFLOAD_NO_REQS;
} else if (status)
return status;
status = decode_write_response(xdr, &res->write_res);
if (status)
return status;
return decode_copy_requirements(xdr, res);
}
static int decode_deallocate(struct xdr_stream *xdr, struct nfs42_falloc_res *res)
{
return decode_op_hdr(xdr, OP_DEALLOCATE);
}
static int decode_seek(struct xdr_stream *xdr, struct nfs42_seek_res *res)
{
int status;
__be32 *p;
status = decode_op_hdr(xdr, OP_SEEK);
if (status)
return status;
p = xdr_inline_decode(xdr, 4 + 8);
if (unlikely(!p))
goto out_overflow;
res->sr_eof = be32_to_cpup(p++);
p = xdr_decode_hyper(p, &res->sr_offset);
return 0;
out_overflow:
print_overflow_msg(__func__, xdr);
return -EIO;
}
static int decode_layoutstats(struct xdr_stream *xdr)
{
return decode_op_hdr(xdr, OP_LAYOUTSTATS);
}
static int decode_clone(struct xdr_stream *xdr)
{
return decode_op_hdr(xdr, OP_CLONE);
}
/*
* Decode ALLOCATE request
*/
static int nfs4_xdr_dec_allocate(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_falloc_res *res)
{
struct compound_hdr hdr;
int status;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_allocate(xdr, res);
if (status)
goto out;
decode_getfattr(xdr, res->falloc_fattr, res->falloc_server);
out:
return status;
}
/*
* Decode COPY response
*/
static int nfs4_xdr_dec_copy(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_copy_res *res)
{
struct compound_hdr hdr;
int status;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_savefh(xdr);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_copy(xdr, res);
out:
return status;
}
/*
* Decode DEALLOCATE request
*/
static int nfs4_xdr_dec_deallocate(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_falloc_res *res)
{
struct compound_hdr hdr;
int status;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_deallocate(xdr, res);
if (status)
goto out;
decode_getfattr(xdr, res->falloc_fattr, res->falloc_server);
out:
return status;
}
/*
* Decode SEEK request
*/
static int nfs4_xdr_dec_seek(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_seek_res *res)
{
struct compound_hdr hdr;
int status;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_seek(xdr, res);
out:
return status;
}
/*
* Decode LAYOUTSTATS request
*/
static int nfs4_xdr_dec_layoutstats(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_layoutstat_res *res)
{
struct compound_hdr hdr;
int status, i;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
WARN_ON(res->num_dev > PNFS_LAYOUTSTATS_MAXDEV);
for (i = 0; i < res->num_dev; i++) {
status = decode_layoutstats(xdr);
if (status)
goto out;
}
out:
res->rpc_status = status;
return status;
}
/*
* Decode CLONE request
*/
static int nfs4_xdr_dec_clone(struct rpc_rqst *rqstp,
struct xdr_stream *xdr,
struct nfs42_clone_res *res)
{
struct compound_hdr hdr;
int status;
status = decode_compound_hdr(xdr, &hdr);
if (status)
goto out;
status = decode_sequence(xdr, &res->seq_res, rqstp);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_savefh(xdr);
if (status)
goto out;
status = decode_putfh(xdr);
if (status)
goto out;
status = decode_clone(xdr);
if (status)
goto out;
status = decode_getfattr(xdr, res->dst_fattr, res->server);
out:
res->rpc_status = status;
return status;
}
