int main(int argc, char *argv[])
{
fitsfile *infptr = 0, *outfptr = 0; /* FITS file pointers */
int status = 0; /* CFITSIO status value MUST be initialized to zero! */
int icol = 0, incols = 0, outcols = 0, intype = 0, outtype = 0, check = 1;
long inrep = 0, outrep = 0, width = 0, inrows = 0, outrows = 0, ii = 0, jj = 0;
unsigned char *buffer = 0;
int printhelp = (argc == 2 && (strcmp(argv[1], "-h") == 0 || strcmp(argv[1], "--help") == 0));
if (printhelp || argc != 3) {
fprintf(stderr, "Usage: %s infile1[ext][filter] outfile[ext]\n", argv[0]);
fprintf(stderr, "\n");
fprintf(stderr, "Merge 2 tables by copying all the rows from the 1st table\n");
fprintf(stderr, "into the 2nd table. The 2 tables must have identical\n");
fprintf(stderr, "structure, with the same number of columns with the same\n");
fprintf(stderr, "datatypes. This program modifies the output file in place,\n");
fprintf(stderr, "rather than creating a whole new output file.\n");
fprintf(stderr, "\n");
fprintf(stderr, "Examples: \n");
fprintf(stderr, "\n");
fprintf(stderr, "1. %s intab.fit+1 outtab.fit+2\n", argv[0]);
fprintf(stderr, "\n");
fprintf(stderr, " merge the table in the 1st extension of intab.fit with\n");
fprintf(stderr, " the table in the 2nd extension of outtab.fit.\n");
fprintf(stderr, "\n");
fprintf(stderr, "2. %s 'intab.fit+1[PI > 45]' outab.fits+2\n", argv[0]);
fprintf(stderr, "\n");
fprintf(stderr, " Same as the 1st example, except only rows that have a PI\n");
fprintf(stderr, " column value > 45 will be merged into the output table.\n");
fprintf(stderr, "\n");
return (0);
}
/* open both input and output files and perform validity checks */
if (fits_open_file(&infptr, argv[1], READONLY, &status) ||
fits_open_file(&outfptr, argv[2], READWRITE, &status)) {
fprintf(stderr, " Couldn't open both files\n");
}
else if (fits_get_hdu_type(infptr, &intype, &status) ||
fits_get_hdu_type(outfptr, &outtype, &status)) {
fprintf(stderr, "couldn't get the type of HDU for the files\n");
}
else if (intype == IMAGE_HDU) {
fprintf(stderr, "The input HDU is an image, not a table\n");
}
else if (outtype == IMAGE_HDU) {
fprintf(stderr, "The output HDU is an image, not a table\n");
}
else if (outtype != intype) {
fprintf(stderr, "Input and output HDUs are not the same type of table.\n");
}
else if (fits_get_num_cols(infptr, &incols, &status) ||
fits_get_num_cols(outfptr, &outcols, &status)) {
fprintf(stderr, "Couldn't get number of columns in the tables\n");
}
else if (incols != outcols) {
fprintf(stderr, "Input and output HDUs don't have same # of columns.\n");
}
else if (fits_read_key(infptr, TLONG, "NAXIS1", &width, NULL, &status)) {
fprintf(stderr, "Couldn't get width of input table\n");
}
else if (!(buffer = (unsigned char *) malloc(width))) {
fprintf(stderr, "memory allocation error\n");
}
else if (fits_get_num_rows(infptr, &inrows, &status) ||
fits_get_num_rows(outfptr, &outrows, &status)) {
fprintf(stderr, "Couldn't get the number of rows in the tables\n");
}
else {
/* check that the corresponding columns have the same datatypes */
for (icol = 1; icol <= incols; icol++) {
fits_get_coltype(infptr, icol, &intype, &inrep, NULL, &status);
fits_get_coltype(outfptr, icol, &outtype, &outrep, NULL, &status);
if (intype != outtype || inrep != outrep) {
fprintf(stderr, "Column %d is not the same in both tables\n", icol);
check = 0;
}
}
if (check && !status) {
/* insert 'inrows' empty rows at the end of the output table */
fits_insert_rows(outfptr, outrows, inrows, &status);
for (ii = 1, jj = outrows +1; ii <= inrows; ii++, jj++) {
/* read row from input and write it to the output table */
fits_read_tblbytes(infptr, ii, 1, width, buffer, &status);
fits_write_tblbytes(outfptr, jj, 1, width, buffer, &status);
if (status) {
break; /* jump out of loop if error occurred */
}
}
/* all done; now free memory and close files */
fits_close_file(outfptr, &status);
fits_close_file(infptr, &status);
}
}
if (buffer) {
free(buffer);
}
if (status) {
fits_report_error(stderr, status); /* print any error message */
}
return (status);
}
int main(int argc, char *argv[])
{
static struct option long_opts[] = {
{"start", 1, NULL, 's'},
{"end", 1, NULL, 'e'},
{0,0,0,0}
};
fitsfile *infptr, *outfptr; /* FITS file pointers defined in fitsio.h */
int opt, opti;
int i, status = 0, ii = 1, jj=1; /* status must always be initialized = 0 */
int lo_row, hi_row;
unsigned char *buffer = 0;
long nrows;
int ncols;
int tfields;
long pcount;
char extname[FLEN_VALUE];
char *ttype[NFIELDS_I];
char *tform[NFIELDS_I];
char *tunit[NFIELDS_I];
char *tcomm[NFIELDS_I];
float start=0.0, end=1.0;
while ((opt=getopt_long(argc,argv,"s:e:h",long_opts,&opti))!=-1) {
switch (opt) {
case 's':
start = atof(optarg);
break;
case 'e':
end = atof(optarg);
break;
case 'h':
default:
usage();
exit(0);
break;
}
}
if (argc < 3)
{
usage();
return(0);
}
//printf("> %s %s\n", argv[1], argv[2]);
//printf("> %s %s\n", argv[optind], argv[2]);
/* Allocate space for the table parameters and initialize */
for (i=0; i<NFIELDS_I; i++)
{
ttype[i] = (char *) malloc(FLEN_VALUE*sizeof(char));
tform[i] = (char *) malloc(FLEN_VALUE*sizeof(char));
tunit[i] = (char *) malloc(FLEN_VALUE*sizeof(char));
tcomm[i] = (char *) malloc(FLEN_CARD*sizeof(char));
strcpy(ttype[i], " ");
}
/* Open the input file */
if ( !fits_open_file(&infptr, argv[optind], READONLY, &status) )
{
/* Create the output file */
if ( !fits_create_file(&outfptr, argv[optind+1], &status) )
{
/* Copy every HDU until we get an error */
//while( !fits_movabs_hdu(infptr, ii++, NULL, &status) )
/* Copy first HDU */
fits_copy_hdu(infptr, outfptr, 0, &status);
fits_movnam_hdu(infptr, BINARY_TBL, "SUBINT", 0, &status);
fits_get_num_rows(infptr, &nrows, &status);
printf("Number of rows = %ld\n", nrows);
fits_get_num_cols(infptr, &ncols, &status);
printf("Number of cols = %d\n", ncols);
long width;
fits_read_key(infptr, TLONG, "NAXIS1", &width, NULL, &status);
printf("Width = %ld\n", width);
buffer = (unsigned char *) malloc(width);
/* Copy the fits header */
fits_copy_header(infptr, outfptr, &status);
//#if 0
/* Determine low and high row number ot copy */
lo_row = 1 + start * nrows;
hi_row = end * nrows;
printf("lo_row=%d hi_row=%d\n", lo_row, hi_row);
for (ii=lo_row, jj=1; ii<=hi_row; ii++, jj++) {
printf("\rRead %d/%ld", ii, nrows);
fits_read_tblbytes( infptr, ii, 1, width, buffer, &status);
fits_write_tblbytes(outfptr, jj, 1, width, buffer, &status);
}
nrows = (hi_row-lo_row)+1;
fits_update_key(outfptr, TLONG, "NAXIS2", &nrows, 0, &status);
printf("\nDone\n");
//#endif
/* Reset status after normal error */
//if (status == END_OF_FILE) status = 0;
fits_close_file(outfptr, &status);
}
fits_close_file(infptr, &status);
}
/* if error occured, print out error message */
if (status) fits_report_error(stderr, status);
return(status);
}