gboolean
flatpak_builtin_build_init (int argc, char **argv, GCancellable *cancellable, GError **error)
{
  g_autoptr(GOptionContext) context = NULL;
  g_autoptr(GFile) var_deploy_files = NULL;
  g_autoptr(GFile) base = NULL;
  g_autoptr(GFile) files_dir = NULL;
  g_autoptr(GFile) usr_dir = NULL;
  g_autoptr(GFile) var_dir = NULL;
  g_autoptr(GFile) var_tmp_dir = NULL;
  g_autoptr(GFile) var_run_dir = NULL;
  g_autoptr(GFile) metadata_file = NULL;
  g_autoptr(GString) metadata_contents = NULL;
  g_autoptr(GError) my_error = NULL;
  const char *app_id;
  const char *directory;
  const char *sdk;
  const char *runtime;
  const char *branch = "master";
  g_autofree char *runtime_ref = NULL;
  g_autofree char *var_ref = NULL;
  g_autofree char *sdk_ref = NULL;
  int i;

  context = g_option_context_new (_("DIRECTORY APPNAME SDK RUNTIME [BRANCH] - Initialize a directory for building"));
  g_option_context_set_translation_domain (context, GETTEXT_PACKAGE);

  if (!flatpak_option_context_parse (context, options, &argc, &argv, FLATPAK_BUILTIN_FLAG_NO_DIR, NULL, cancellable, error))
    return FALSE;

  if (argc < 5)
    return usage_error (context, _("RUNTIME must be specified"), error);

  if (argc > 6)
    return usage_error (context, _("Too many arguments"), error);

  directory = argv[1];
  app_id = argv[2];
  sdk = argv[3];
  runtime = argv[4];
  if (argc >= 6)
    branch = argv[5];

  if (!flatpak_is_valid_name (app_id, &my_error))
    return flatpak_fail (error, _("'%s' is not a valid application name: %s"), app_id, my_error->message);

  if (!flatpak_is_valid_name (runtime, &my_error))
    return flatpak_fail (error, _("'%s' is not a valid runtime name: %s"), runtime, my_error->message);

  if (!flatpak_is_valid_name (sdk, &my_error))
    return flatpak_fail (error, _("'%s' is not a valid sdk name: %s"), sdk, my_error->message);

  if (!flatpak_is_valid_branch (branch, &my_error))
    return flatpak_fail (error, _("'%s' is not a valid branch name: %s"), branch, my_error->message);

  runtime_ref = flatpak_build_untyped_ref (runtime, branch, opt_arch);
  sdk_ref = flatpak_build_untyped_ref (sdk, branch, opt_arch);

  base = g_file_new_for_commandline_arg (directory);

  if (!flatpak_mkdir_p (base, cancellable, error))
    return FALSE;

  files_dir = g_file_get_child (base, "files");
  if (opt_sdk_dir)
    usr_dir = g_file_get_child (base, opt_sdk_dir);
  else
    usr_dir = g_file_get_child (base, "usr");
  var_dir = g_file_get_child (base, "var");
  var_tmp_dir = g_file_get_child (var_dir, "tmp");
  var_run_dir = g_file_get_child (var_dir, "run");
  metadata_file = g_file_get_child (base, "metadata");

  if (!opt_update &&
      g_file_query_exists (files_dir, cancellable))
    return flatpak_fail (error, _("Build directory %s already initialized"), directory);

  if (opt_writable_sdk)
    {
      g_autofree char *full_sdk_ref = g_strconcat ("runtime/", sdk_ref, NULL);
      g_autoptr(GFile) sdk_deploy_files = NULL;
      g_autoptr(FlatpakDeploy) sdk_deploy = NULL;

      sdk_deploy = flatpak_find_deploy_for_ref (full_sdk_ref, cancellable, error);
      if (sdk_deploy == NULL)
        return FALSE;

      if (!flatpak_rm_rf (usr_dir, NULL, &my_error))
        {
          if (!g_error_matches (my_error, G_IO_ERROR, G_IO_ERROR_NOT_FOUND))
            {
              g_propagate_error (error, g_steal_pointer (&my_error));
              return FALSE;
            }

          g_clear_error (&my_error);
        }

      sdk_deploy_files = flatpak_deploy_get_files (sdk_deploy);
      if (!flatpak_cp_a (sdk_deploy_files, usr_dir, FLATPAK_CP_FLAGS_NO_CHOWN, cancellable, error))
        return FALSE;

      if (opt_sdk_extensions &&
          !copy_extensions (sdk_deploy, branch, opt_sdk_extensions, usr_dir, cancellable, error))
        return FALSE;
    }

  if (opt_var)
    {
      var_ref = flatpak_build_runtime_ref (opt_var, branch, opt_arch);

      var_deploy_files = flatpak_find_files_dir_for_ref (var_ref, cancellable, error);
      if (var_deploy_files == NULL)
        return FALSE;
    }

  if (opt_update)
    return TRUE;

  if (!g_file_make_directory (files_dir, cancellable, error))
    return FALSE;

  if (opt_base)
    {
      const char *base_branch;
      g_autofree char *base_ref = NULL;
      g_autoptr(GFile) base_deploy_files = NULL;
      g_autoptr(FlatpakDeploy) base_deploy = NULL;

      base_branch = opt_base_version ? opt_base_version : "master";
      base_ref = flatpak_build_app_ref (opt_base, base_branch, opt_arch);
      base_deploy = flatpak_find_deploy_for_ref (base_ref, cancellable, error);
      if (base_deploy == NULL)
        return FALSE;

      base_deploy_files = flatpak_deploy_get_files (base_deploy);
      if (!flatpak_cp_a (base_deploy_files, files_dir,
                         FLATPAK_CP_FLAGS_MERGE | FLATPAK_CP_FLAGS_NO_CHOWN,
                         cancellable, error))
        return FALSE;


      if (opt_base_extensions &&
          !copy_extensions (base_deploy, base_branch, opt_base_extensions, files_dir, cancellable, error))
        return FALSE;
    }

  if (var_deploy_files)
    {
      if (!flatpak_cp_a (var_deploy_files, var_dir, FLATPAK_CP_FLAGS_NONE, cancellable, error))
        return FALSE;
    }
  else
    {
      if (!g_file_make_directory (var_dir, cancellable, error))
        return FALSE;
    }

  if (!flatpak_mkdir_p (var_tmp_dir, cancellable, error))
    return FALSE;

  if (!g_file_query_exists (var_run_dir, cancellable) &&
      !g_file_make_symbolic_link (var_run_dir, "/run", cancellable, error))
    return FALSE;


  metadata_contents = g_string_new ("[Application]\n");
  g_string_append_printf (metadata_contents,
                          "name=%s\n"
                          "runtime=%s\n"
                          "sdk=%s\n",
                          app_id, runtime_ref, sdk_ref);
  if (opt_tags != NULL)
    {
      g_string_append (metadata_contents, "tags=");
      for (i = 0; opt_tags[i] != NULL; i++)
        {
          g_string_append (metadata_contents, opt_tags[i]);
          g_string_append_c (metadata_contents, ';');
        }
      g_string_append_c (metadata_contents, '\n');
    }

  if (!g_file_replace_contents (metadata_file,
                                metadata_contents->str, metadata_contents->len, NULL, FALSE,
                                G_FILE_CREATE_REPLACE_DESTINATION,
                                NULL, cancellable, error))
    return FALSE;

  return TRUE;
}
gboolean
flatpak_builtin_build_sign (int argc, char **argv, GCancellable *cancellable, GError **error)
{
  g_autoptr(GOptionContext) context = NULL;
  g_autoptr(GFile) repofile = NULL;
  g_autoptr(OstreeRepo) repo = NULL;
  const char *location;
  const char *branch;
  const char *id;
  g_autofree char *commit_checksum = NULL;
  g_autofree char *ref = NULL;
  char **iter;

  context = g_option_context_new ("LOCATION ID [BRANCH] - Create a repository from a build directory");

  if (!flatpak_option_context_parse (context, options, &argc, &argv, FLATPAK_BUILTIN_FLAG_NO_DIR, NULL, cancellable, error))
    return FALSE;

  if (argc < 3)
    {
      usage_error (context, "LOCATION and DIRECTORY must be specified", error);
      return FALSE;
    }

  location = argv[1];
  id = argv[2];

  if (argc >= 4)
    branch = argv[3];
  else
    branch = "master";

  if (!flatpak_is_valid_name (id))
    return flatpak_fail (error, "'%s' is not a valid name", id);

  if (!flatpak_is_valid_branch (branch))
    return flatpak_fail (error, "'%s' is not a valid branch name", branch);

  if (opt_gpg_key_ids == NULL)
    return flatpak_fail (error, "No gpg key ids specified");

  if (opt_runtime)
    ref = flatpak_build_runtime_ref (id, branch, opt_arch);
  else
    ref = flatpak_build_app_ref (id, branch, opt_arch);

  repofile = g_file_new_for_commandline_arg (location);
  repo = ostree_repo_new (repofile);

  if (!ostree_repo_open (repo, cancellable, error))
    return FALSE;

  if (!ostree_repo_resolve_rev (repo, ref, TRUE, &commit_checksum, error))
    return FALSE;

  for (iter = opt_gpg_key_ids; iter && *iter; iter++)
    {
      const char *keyid = *iter;

      if (!ostree_repo_sign_commit (repo,
                                    commit_checksum,
                                    keyid,
                                    opt_gpg_homedir,
                                    cancellable,
                                    error))
        return FALSE;
    }

  return TRUE;
}
gboolean
flatpak_builtin_build_commit_from (int argc, char **argv, GCancellable *cancellable, GError **error)
{
  g_autoptr(GOptionContext) context = NULL;
  g_autoptr(GFile) dst_repofile = NULL;
  g_autoptr(OstreeRepo) dst_repo = NULL;
  g_autoptr(GFile) src_repofile = NULL;
  g_autoptr(OstreeRepo) src_repo = NULL;
  g_autofree char *src_repo_uri = NULL;
  const char *dst_repo_arg;
  const char **dst_refs;
  int n_dst_refs = 0;
  g_autoptr(FlatpakRepoTransaction) transaction = NULL;
  g_autoptr(GPtrArray) src_refs = NULL;
  g_autoptr(GPtrArray) resolved_src_refs = NULL;
  OstreeRepoCommitState src_commit_state;
  struct timespec ts;
  guint64 timestamp;
  int i;

  context = g_option_context_new (_("DST-REPO [DST-REF…] - Make a new commit from existing commits"));
  g_option_context_set_translation_domain (context, GETTEXT_PACKAGE);

  if (!flatpak_option_context_parse (context, options, &argc, &argv, FLATPAK_BUILTIN_FLAG_NO_DIR, NULL, cancellable, error))
    return FALSE;

  if (argc < 2)
    return usage_error (context, _("DST-REPO must be specified"), error);

  dst_repo_arg = argv[1];

  dst_refs = (const char **) argv + 2;
  n_dst_refs = argc - 2;

  if (opt_src_repo == NULL && n_dst_refs != 1)
    return usage_error (context, _("If --src-repo is not specified, exactly one destination ref must be specified"), error);

  if (opt_src_ref != NULL && n_dst_refs != 1)
    return usage_error (context, _("If --src-ref is specified, exactly one destination ref must be specified"), error);

  if (opt_src_repo == NULL && opt_src_ref == NULL)
    return flatpak_fail (error, _("Either --src-repo or --src-ref must be specified."));

  /* Always create a commit if we're eol:ing, even though the app is the same */
  if (opt_endoflife != NULL || opt_endoflife_rebase != NULL)
    opt_force = TRUE;

  if (opt_endoflife_rebase)
    {
      opt_endoflife_rebase_new = g_new0 (char *, g_strv_length (opt_endoflife_rebase));

      for (i = 0; opt_endoflife_rebase[i] != NULL; i++)
        {
          char *rebase_old = opt_endoflife_rebase[i];
          char *rebase_new = strchr (rebase_old, '=');

          if (rebase_new == NULL) {
            return usage_error (context, _("Invalid argument format of use  --end-of-life-rebase=OLDID=NEWID"), error);
          }
          *rebase_new = 0;
          rebase_new++;

          if (!flatpak_is_valid_name (rebase_old, error))
            return glnx_prefix_error (error, _("Invalid name %s in --end-of-life-rebase"), rebase_old);

          if (!flatpak_is_valid_name (rebase_new, error))
            return glnx_prefix_error (error, _("Invalid name %s in --end-of-life-rebase"), rebase_new);

          opt_endoflife_rebase_new[i] = rebase_new;
        }
    }

  if (opt_timestamp)
    {
      if (!parse_datetime (&ts, opt_timestamp, NULL))
        return flatpak_fail (error, _("Could not parse '%s'"), opt_timestamp);
    }

  dst_repofile = g_file_new_for_commandline_arg (dst_repo_arg);
  if (!g_file_query_exists (dst_repofile, cancellable))
    return flatpak_fail (error, _("'%s' is not a valid repository"), dst_repo_arg);

  dst_repo = ostree_repo_new (dst_repofile);
  if (!ostree_repo_open (dst_repo, cancellable, error))
    return FALSE;

  if (opt_disable_fsync)
    ostree_repo_set_disable_fsync (dst_repo, TRUE);

  if (opt_src_repo)
    {
      src_repofile = g_file_new_for_commandline_arg (opt_src_repo);
      if (!g_file_query_exists (src_repofile, cancellable))
        return flatpak_fail (error, _("'%s' is not a valid repository"), opt_src_repo);

      src_repo_uri = g_file_get_uri (src_repofile);
      src_repo = ostree_repo_new (src_repofile);
      if (!ostree_repo_open (src_repo, cancellable, error))
        return FALSE;
    }
  else
    {
      src_repo = g_object_ref (dst_repo);
    }

  src_refs = g_ptr_array_new_with_free_func (g_free);
  if (opt_src_ref)
    {
      g_assert (n_dst_refs == 1);
      g_ptr_array_add (src_refs, g_strdup (opt_src_ref));
    }
  else
    {
      g_assert (opt_src_repo != NULL);
      if (n_dst_refs == 0)
        {
          g_autofree const char **keys = NULL;
          g_autoptr(GHashTable) all_src_refs = NULL;

          if (!ostree_repo_list_refs (src_repo, NULL, &all_src_refs,
                                      cancellable, error))
            return FALSE;

          keys = (const char **) g_hash_table_get_keys_as_array (all_src_refs, NULL);

          for (i = 0; keys[i] != NULL; i++)
            {
              if (g_str_has_prefix (keys[i], "runtime/") ||
                  g_str_has_prefix (keys[i], "app/"))
                g_ptr_array_add (src_refs, g_strdup (keys[i]));
            }
          n_dst_refs = src_refs->len;
          dst_refs = (const char **) src_refs->pdata;
        }
      else
        {
          for (i = 0; i < n_dst_refs; i++)
            g_ptr_array_add (src_refs, g_strdup (dst_refs[i]));
        }
    }

  resolved_src_refs = g_ptr_array_new_with_free_func (g_free);
  for (i = 0; i < src_refs->len; i++)
    {
      const char *src_ref = g_ptr_array_index (src_refs, i);
      char *resolved_ref;

      if (!ostree_repo_resolve_rev (src_repo, src_ref, FALSE, &resolved_ref, error))
        return FALSE;

      g_ptr_array_add (resolved_src_refs, resolved_ref);
    }

  if (src_repo_uri != NULL)
    {
      OstreeRepoPullFlags pullflags = 0;
      GVariantBuilder builder;
      g_autoptr(OstreeAsyncProgress) progress = NULL;
      g_auto(GLnxConsoleRef) console = { 0, };
      g_autoptr(GVariant) options = NULL;
      gboolean res;

      if (opt_untrusted)
        pullflags |= OSTREE_REPO_PULL_FLAGS_UNTRUSTED;

      glnx_console_lock (&console);
      if (console.is_tty)
        progress = ostree_async_progress_new_and_connect (ostree_repo_pull_default_console_progress_changed, &console);

      g_variant_builder_init (&builder, G_VARIANT_TYPE ("a{sv}"));
      g_variant_builder_add (&builder, "{s@v}", "flags",
                             g_variant_new_variant (g_variant_new_int32 (pullflags)));
      g_variant_builder_add (&builder, "{s@v}", "refs",
                             g_variant_new_variant (g_variant_new_strv ((const char * const *) resolved_src_refs->pdata,
                                                                        resolved_src_refs->len)));
      g_variant_builder_add (&builder, "{s@v}", "depth",
                             g_variant_new_variant (g_variant_new_int32 (0)));

      options = g_variant_ref_sink (g_variant_builder_end (&builder));
      res = ostree_repo_pull_with_options (dst_repo, src_repo_uri,
                                           options,
                                           progress,
                                           cancellable, error);

      if (progress)
        ostree_async_progress_finish (progress);

      if (!res)
        return FALSE;
    }

  /* By now we have the commit with commit_id==resolved_ref and dependencies in dst_repo. We now create a new
   * commit based on the toplevel tree ref from that commit.
   * This is equivalent to:
   *   ostree commit --skip-if-unchanged --repo=${destrepo} --tree=ref=${resolved_ref}
   */

  transaction = flatpak_repo_transaction_start (dst_repo, cancellable, error);
  if (transaction == NULL)
    return FALSE;

  for (i = 0; i < resolved_src_refs->len; i++)
    {
      const char *dst_ref = dst_refs[i];
      const char *resolved_ref = g_ptr_array_index (resolved_src_refs, i);
      g_autofree char *dst_parent = NULL;
      g_autoptr(GFile) dst_parent_root = NULL;
      g_autoptr(GFile) src_ref_root = NULL;
      g_autoptr(GVariant) src_commitv = NULL;
      g_autoptr(GVariant) dst_commitv = NULL;
      g_autoptr(OstreeMutableTree) mtree = NULL;
      g_autoptr(GFile) dst_root = NULL;
      g_autoptr(GVariant) commitv_metadata = NULL;
      g_autoptr(GVariant) metadata = NULL;
      const char *subject;
      const char *body;
      g_autofree char *commit_checksum = NULL;
      GVariantBuilder metadata_builder;
      gint j;
      const char *dst_collection_id = NULL;
      const char *main_collection_id = NULL;
      g_autoptr(GPtrArray) collection_ids = NULL;

      if (!ostree_repo_resolve_rev (dst_repo, dst_ref, TRUE, &dst_parent, error))
        return FALSE;

      if (dst_parent != NULL &&
          !ostree_repo_read_commit (dst_repo, dst_parent, &dst_parent_root, NULL, cancellable, error))
        return FALSE;

      if (!ostree_repo_read_commit (dst_repo, resolved_ref, &src_ref_root, NULL, cancellable, error))
        return FALSE;

      if (!ostree_repo_load_commit (dst_repo, resolved_ref, &src_commitv, &src_commit_state, error))
        return FALSE;

      if (src_commit_state & OSTREE_REPO_COMMIT_STATE_PARTIAL)
        return flatpak_fail (error, _("Can't commit from partial source commit."));

      /* Don't create a new commit if this is the same tree */
      if (!opt_force && dst_parent_root != NULL && g_file_equal (dst_parent_root, src_ref_root))
        {
          g_print (_("%s: no change\n"), dst_ref);
          continue;
        }

      mtree = ostree_mutable_tree_new ();
      if (!ostree_repo_write_directory_to_mtree (dst_repo, src_ref_root, mtree, NULL,
                                                 cancellable, error))
        return FALSE;

      if (!ostree_repo_write_mtree (dst_repo, mtree, &dst_root, cancellable, error))
        return FALSE;

      commitv_metadata = g_variant_get_child_value (src_commitv, 0);

      g_variant_get_child (src_commitv, 3, "&s", &subject);
      if (opt_subject)
        subject = (const char *) opt_subject;
      g_variant_get_child (src_commitv, 4, "&s", &body);
      if (opt_body)
        body = (const char *) opt_body;

      dst_collection_id = ostree_repo_get_collection_id (dst_repo);

      collection_ids = g_ptr_array_new_with_free_func (g_free);
      if (dst_collection_id)
        {
          main_collection_id = dst_collection_id;
          g_ptr_array_add (collection_ids, g_strdup (dst_collection_id));
        }

      if (opt_extra_collection_ids != NULL)
        {
          for (j = 0; opt_extra_collection_ids[j] != NULL; j++)
            {
              const char *cid = opt_extra_collection_ids[j];
              if (main_collection_id == NULL)
                main_collection_id = cid; /* Fall back to first arg */

              if (g_strcmp0 (cid, dst_collection_id) != 0)
                g_ptr_array_add (collection_ids, g_strdup (cid));
            }
        }

      g_ptr_array_sort (collection_ids, (GCompareFunc) flatpak_strcmp0_ptr);

      /* Copy old metadata */
      g_variant_builder_init (&metadata_builder, G_VARIANT_TYPE ("a{sv}"));

      /* Bindings. xa.ref is deprecated but added anyway for backwards compatibility. */
      g_variant_builder_add (&metadata_builder, "{sv}", "ostree.collection-binding",
                             g_variant_new_string (main_collection_id ? main_collection_id : ""));
      if (collection_ids->len > 0)
        {
          g_autoptr(GVariantBuilder) cr_builder = g_variant_builder_new (G_VARIANT_TYPE ("a(ss)"));

          for (j = 0; j < collection_ids->len; j++)
            g_variant_builder_add (cr_builder, "(ss)", g_ptr_array_index (collection_ids, j), dst_ref);

          g_variant_builder_add (&metadata_builder, "{sv}", "ostree.collection-refs-binding",
                                 g_variant_builder_end (cr_builder));
        }
      g_variant_builder_add (&metadata_builder, "{sv}", "ostree.ref-binding",
                             g_variant_new_strv (&dst_ref, 1));
      g_variant_builder_add (&metadata_builder, "{sv}", "xa.ref", g_variant_new_string (dst_ref));

      /* Record the source commit. This is nice to have, but it also
         means the commit-from gets a different commit id, which
         avoids problems with e.g.  sharing .commitmeta files
         (signatures) */
      g_variant_builder_add (&metadata_builder, "{sv}", "xa.from_commit", g_variant_new_string (resolved_ref));

      for (j = 0; j < g_variant_n_children (commitv_metadata); j++)
        {
          g_autoptr(GVariant) child = g_variant_get_child_value (commitv_metadata, j);
          g_autoptr(GVariant) keyv = g_variant_get_child_value (child, 0);
          const char *key = g_variant_get_string (keyv, NULL);

          if (strcmp (key, "xa.ref") == 0 ||
              strcmp (key, "xa.from_commit") == 0 ||
              strcmp (key, "ostree.collection-binding") == 0 ||
              strcmp (key, "ostree.collection-refs-binding") == 0 ||
              strcmp (key, "ostree.ref-binding") == 0)
            continue;

          if (opt_endoflife &&
              strcmp (key, OSTREE_COMMIT_META_KEY_ENDOFLIFE) == 0)
            continue;

          if (opt_endoflife_rebase &&
              strcmp (key, OSTREE_COMMIT_META_KEY_ENDOFLIFE_REBASE) == 0)
            continue;

          g_variant_builder_add_value (&metadata_builder, child);
        }

      if (opt_endoflife && *opt_endoflife)
        g_variant_builder_add (&metadata_builder, "{sv}", OSTREE_COMMIT_META_KEY_ENDOFLIFE,
                               g_variant_new_string (opt_endoflife));

      if (opt_endoflife_rebase)
        {
          g_auto(GStrv) dst_ref_parts = g_strsplit (dst_ref, "/", 0);

          for (j = 0; opt_endoflife_rebase[j] != NULL; j++)
            {
              const char *old_prefix = opt_endoflife_rebase[j];

              if (flatpak_has_name_prefix (dst_ref_parts[1], old_prefix))
                {
                  g_autofree char *new_id = g_strconcat (opt_endoflife_rebase_new[j], dst_ref_parts[1] + strlen(old_prefix), NULL);
                  g_autofree char *rebased_ref = g_build_filename (dst_ref_parts[0], new_id, dst_ref_parts[2], dst_ref_parts[3], NULL);

                  g_variant_builder_add (&metadata_builder, "{sv}", OSTREE_COMMIT_META_KEY_ENDOFLIFE_REBASE,
                                         g_variant_new_string (rebased_ref));
                  break;
                }
            }
        }

      timestamp = ostree_commit_get_timestamp (src_commitv);
      if (opt_timestamp)
        timestamp = ts.tv_sec;

      metadata = g_variant_ref_sink (g_variant_builder_end (&metadata_builder));
      if (!ostree_repo_write_commit_with_time (dst_repo, dst_parent, subject, body, metadata,
                                               OSTREE_REPO_FILE (dst_root),
                                               timestamp,
                                               &commit_checksum, cancellable, error))
        return FALSE;

      g_print ("%s: %s\n", dst_ref, commit_checksum);

      if (!ostree_repo_load_commit (dst_repo, commit_checksum, &dst_commitv, NULL, error))
        return FALSE;

      /* This doesn't copy the detached metadata. I'm not sure if this is a problem.
       * The main thing there is commit signatures, and we can't copy those, as the commit hash changes.
       */

      if (opt_gpg_key_ids)
        {
          char **iter;

          for (iter = opt_gpg_key_ids; iter && *iter; iter++)
            {
              const char *keyid = *iter;
              g_autoptr(GError) my_error = NULL;

              if (!ostree_repo_sign_commit (dst_repo,
                                            commit_checksum,
                                            keyid,
                                            opt_gpg_homedir,
                                            cancellable,
                                            &my_error) &&
                  !g_error_matches (my_error, G_IO_ERROR, G_IO_ERROR_EXISTS))
                {
                  g_propagate_error (error, g_steal_pointer (&my_error));
                  return FALSE;
                }
            }
        }

      if (dst_collection_id != NULL)
        {
          OstreeCollectionRef ref = { (char *) dst_collection_id, (char *) dst_ref };
          ostree_repo_transaction_set_collection_ref (dst_repo, &ref, commit_checksum);
        }
      else
        {
          ostree_repo_transaction_set_ref (dst_repo, NULL, dst_ref, commit_checksum);
        }

      if (opt_extra_collection_ids)
        {
          for (j = 0; opt_extra_collection_ids[j] != NULL; j++)
            {
              OstreeCollectionRef ref = { (char *) opt_extra_collection_ids[j], (char *) dst_ref };
              ostree_repo_transaction_set_collection_ref (dst_repo, &ref, commit_checksum);
            }
        }

      /* Copy + Rewrite any deltas */
      {
        const char *from[2];
        gsize j, n_from = 0;

        if (dst_parent != NULL)
          from[n_from++] = dst_parent;
        from[n_from++] = NULL;

        for (j = 0; j < n_from; j++)
          {
            g_autoptr(GError) local_error = NULL;
            if (!rewrite_delta (src_repo, resolved_ref, dst_repo, commit_checksum, dst_commitv, from[j], &local_error))
              g_debug ("Failed to copy delta: %s", local_error->message);
          }
      }
    }

  if (!ostree_repo_commit_transaction (dst_repo, NULL, cancellable, error))
    return FALSE;

  if (opt_update_appstream &&
      !flatpak_repo_generate_appstream (dst_repo, (const char **) opt_gpg_key_ids, opt_gpg_homedir, 0, cancellable, error))
    return FALSE;

  if (!opt_no_update_summary &&
      !flatpak_repo_update (dst_repo,
                            (const char **) opt_gpg_key_ids,
                            opt_gpg_homedir,
                            cancellable,
                            error))
    return FALSE;

  return TRUE;
}
gboolean
flatpak_builtin_install (int argc, char **argv, GCancellable *cancellable, GError **error)
{
  g_autoptr(GOptionContext) context = NULL;
  g_autoptr(GPtrArray) dirs = NULL;
  g_autoptr(FlatpakDir) dir = NULL;
  g_autofree char *remote = NULL;
  g_autofree char *remote_url = NULL;
  char **prefs = NULL;
  int i, n_prefs;
  g_autofree char *target_branch = NULL;
  g_autofree char *default_branch = NULL;
  FlatpakKinds kinds;
  g_autoptr(FlatpakTransaction) transaction = NULL;
  g_autoptr(FlatpakDir) dir_with_remote = NULL;
  gboolean auto_remote = FALSE;

  context = g_option_context_new (_("[LOCATION/REMOTE] [REF…] - Install applications or runtimes"));
  g_option_context_set_translation_domain (context, GETTEXT_PACKAGE);

  if (!flatpak_option_context_parse (context, options, &argc, &argv,
                                     FLATPAK_BUILTIN_FLAG_ALL_DIRS | FLATPAK_BUILTIN_FLAG_OPTIONAL_REPO,
                                     &dirs, cancellable, error))
    return FALSE;

  /* Start with the default or specified dir, this is fine for opt_bundle or opt_from */
  dir = g_object_ref (g_ptr_array_index (dirs, 0));

  if (!opt_bundle && !opt_from && argc >= 2)
    {
      if (flatpak_file_arg_has_suffix (argv[1], ".flatpakref"))
        opt_from = TRUE;
      if (flatpak_file_arg_has_suffix (argv[1], ".flatpak"))
        opt_bundle = TRUE;
    }

  if (opt_bundle)
    return install_bundle (dir, context, argc, argv, cancellable, error);

  if (opt_from)
    return install_from (dir, context, argc, argv, cancellable, error);

  if (argc < 2)
    return usage_error (context, _("At least one REF must be specified"), error);

  if (argc == 2)
    auto_remote = TRUE;

  kinds = flatpak_kinds_from_bools (opt_app, opt_runtime);

  if (!opt_noninteractive)
    g_print (_("Looking for matches…\n"));

  if (!auto_remote &&
      (g_path_is_absolute (argv[1]) ||
       g_str_has_prefix (argv[1], "./")))
    {
      g_autoptr(GFile) remote_file = g_file_new_for_commandline_arg (argv[1]);
      remote_url = g_file_get_uri (remote_file);
      remote = g_strdup (remote_url);
    }
  else
    {
      g_autoptr(GError) local_error = NULL;

      /* If the remote was used, and no single dir was specified, find which
       * one based on the remote. If the remote isn't found assume it's a ref
       * and we should auto-detect the remote. */
      if (!auto_remote &&
          !flatpak_resolve_duplicate_remotes (dirs, argv[1], &dir_with_remote, cancellable, &local_error))
        {
          if (g_error_matches (local_error, FLATPAK_ERROR, FLATPAK_ERROR_REMOTE_NOT_FOUND))
            {
              auto_remote = TRUE;
            }
          else
            {
              g_propagate_error (error, g_steal_pointer (&local_error));
              return FALSE;
            }
        }

      if (!auto_remote)
        {
          remote = g_strdup (argv[1]);
          g_clear_object (&dir);
          dir = g_object_ref (dir_with_remote);
        }
      else
        {
          g_autoptr(GPtrArray) remote_dir_pairs = NULL;
          RemoteDirPair *chosen_pair = NULL;

          remote_dir_pairs = g_ptr_array_new_with_free_func ((GDestroyNotify) remote_dir_pair_free);

          /* Search all remotes for a matching ref. This is imperfect
           * because it only takes the first specified ref into account and
           * doesn't distinguish between an exact match and a fuzzy match, but
           * that's okay because the user will be asked to confirm the remote
           */
          for (i = 0; i < dirs->len; i++)
            {
              FlatpakDir *this_dir = g_ptr_array_index (dirs, i);
              g_auto(GStrv) remotes = NULL;
              guint j = 0;

              remotes = flatpak_dir_list_remotes (this_dir, cancellable, error);
              if (remotes == NULL)
                return FALSE;

              for (j = 0; remotes[j] != NULL; j++)
                {
                  const char *this_remote = remotes[j];
                  g_autofree char *this_default_branch = NULL;
                  g_autofree char *id = NULL;
                  g_autofree char *arch = NULL;
                  g_autofree char *branch = NULL;
                  FlatpakKinds matched_kinds;
                  g_auto(GStrv) refs = NULL;
                  g_autoptr(GError) local_error = NULL;

                  if (flatpak_dir_get_remote_disabled (this_dir, this_remote) ||
                      flatpak_dir_get_remote_noenumerate (this_dir, this_remote))
                    continue;

                  this_default_branch = flatpak_dir_get_remote_default_branch (this_dir, this_remote);

                  flatpak_split_partial_ref_arg_novalidate (argv[1], kinds, opt_arch, target_branch,
                                                            &matched_kinds, &id, &arch, &branch);

                  if (opt_no_pull)
                    refs = flatpak_dir_find_local_refs (this_dir, this_remote, id, branch, this_default_branch, arch,
                                                        flatpak_get_default_arch (),
                                                        matched_kinds, FIND_MATCHING_REFS_FLAGS_FUZZY,
                                                        cancellable, &local_error);
                  else
                    refs = flatpak_dir_find_remote_refs (this_dir, this_remote, id, branch, this_default_branch, arch,
                                                         flatpak_get_default_arch (),
                                                         matched_kinds, FIND_MATCHING_REFS_FLAGS_FUZZY,
                                                         cancellable, &local_error);

                  if (refs == NULL)
                    {
                      g_warning ("An error was encountered searching remote ‘%s’ for ‘%s’: %s", this_remote, argv[1], local_error->message);
                      continue;
                    }

                  if (g_strv_length (refs) == 0)
                    continue;
                  else
                    {
                      RemoteDirPair *pair = remote_dir_pair_new (this_remote, this_dir);
                      g_ptr_array_add (remote_dir_pairs, pair);
                    }
                }
            }

            if (remote_dir_pairs->len == 0)
              return flatpak_fail (error, _("No remote refs found similar to ‘%s’"), argv[1]);

            if (!flatpak_resolve_matching_remotes (opt_yes, remote_dir_pairs, argv[1], &chosen_pair, error))
              return FALSE;

            remote = g_strdup (chosen_pair->remote_name);
            g_clear_object (&dir);
            dir = g_object_ref (chosen_pair->dir);
        }
    }

  if (auto_remote)
    {
      prefs = &argv[1];
      n_prefs = argc - 1;
    }
  else
    {
      prefs = &argv[2];
      n_prefs = argc - 2;
    }

  /* Backwards compat for old "REMOTE NAME [BRANCH]" argument version */
  if (argc == 4 && flatpak_is_valid_name (argv[2], NULL) && looks_like_branch (argv[3]))
    {
      target_branch = g_strdup (argv[3]);
      n_prefs = 1;
    }

  default_branch = flatpak_dir_get_remote_default_branch (dir, remote);

  if (opt_noninteractive)
    transaction = flatpak_quiet_transaction_new (dir, error);
  else
    transaction = flatpak_cli_transaction_new (dir, opt_yes, TRUE, error);
  if (transaction == NULL)
    return FALSE;

  flatpak_transaction_set_no_pull (transaction, opt_no_pull);
  flatpak_transaction_set_no_deploy (transaction, opt_no_deploy);
  flatpak_transaction_set_disable_static_deltas (transaction, opt_no_static_deltas);
  flatpak_transaction_set_disable_dependencies (transaction, opt_no_deps);
  flatpak_transaction_set_disable_related (transaction, opt_no_related);
  flatpak_transaction_set_reinstall (transaction, opt_reinstall);

  for (i = 0; i < n_prefs; i++)
    {
      const char *pref = prefs[i];
      FlatpakKinds matched_kinds;
      g_autofree char *id = NULL;
      g_autofree char *arch = NULL;
      g_autofree char *branch = NULL;
      g_autofree char *ref = NULL;
      g_auto(GStrv) refs = NULL;
      guint refs_len;
      g_autoptr(GError) local_error = NULL;

      flatpak_split_partial_ref_arg_novalidate (pref, kinds, opt_arch, target_branch,
                                                &matched_kinds, &id, &arch, &branch);

      /* We used _novalidate so that the id can be partial, but we can still validate the branch */
      if (branch != NULL && !flatpak_is_valid_branch (branch, &local_error))
        return flatpak_fail_error (error, FLATPAK_ERROR_INVALID_REF, _("Invalid branch %s: %s"), branch, local_error->message);

      if (opt_no_pull)
        refs = flatpak_dir_find_local_refs (dir, remote, id, branch, default_branch, arch,
                                           flatpak_get_default_arch (),
                                           matched_kinds, FIND_MATCHING_REFS_FLAGS_FUZZY,
                                           cancellable, error);
      else
        refs = flatpak_dir_find_remote_refs (dir, remote, id, branch, default_branch, arch,
                                             flatpak_get_default_arch (),
                                             matched_kinds, FIND_MATCHING_REFS_FLAGS_FUZZY,
                                             cancellable, error);
      if (refs == NULL)
        return FALSE;

      refs_len = g_strv_length (refs);
      if (refs_len == 0)
        {
          if (opt_no_pull)
            g_set_error (error, G_IO_ERROR, G_IO_ERROR_NOT_FOUND, _("Nothing matches %s in local repository for remote %s"), id, remote);
          else
            g_set_error (error, G_IO_ERROR, G_IO_ERROR_NOT_FOUND, _("Nothing matches %s in remote %s"), id, remote);
          return FALSE;
        }

      if (!flatpak_resolve_matching_refs (remote, dir, opt_yes, refs, id, &ref, error))
        return FALSE;

      if (!flatpak_transaction_add_install (transaction, remote, ref, (const char **)opt_subpaths, error))
        {
          if (!g_error_matches (*error, FLATPAK_ERROR, FLATPAK_ERROR_ALREADY_INSTALLED))
            return FALSE;

          g_printerr (_("Skipping: %s\n"), (*error)->message);
          g_clear_error (error);
        }
    }

  if (!flatpak_transaction_run (transaction, cancellable, error))
    {
      if (g_error_matches (*error, FLATPAK_ERROR, FLATPAK_ERROR_ABORTED))
        {
          g_clear_error (error);
          return TRUE;
        }

      return FALSE;
    }

  return TRUE;
}
gboolean
flatpak_builtin_build_init (int argc, char **argv, GCancellable *cancellable, GError **error)
{
  g_autoptr(GOptionContext) context = NULL;
  g_autoptr(GFile) var_deploy_base = NULL;
  g_autoptr(GFile) var_deploy_files = NULL;
  g_autoptr(GFile) base = NULL;
  g_autoptr(GFile) files_dir = NULL;
  g_autoptr(GFile) usr_dir = NULL;
  g_autoptr(GFile) var_dir = NULL;
  g_autoptr(GFile) var_tmp_dir = NULL;
  g_autoptr(GFile) var_run_dir = NULL;
  g_autoptr(GFile) metadata_file = NULL;
  g_autoptr(GString) metadata_contents = NULL;
  const char *app_id;
  const char *directory;
  const char *sdk;
  const char *runtime;
  const char *branch = "master";
  g_autofree char *runtime_ref = NULL;
  g_autofree char *var_ref = NULL;
  g_autofree char *sdk_ref = NULL;
  int i;

  context = g_option_context_new ("DIRECTORY APPNAME SDK RUNTIME [BRANCH] - Initialize a directory for building");

  if (!flatpak_option_context_parse (context, options, &argc, &argv, FLATPAK_BUILTIN_FLAG_NO_DIR, NULL, cancellable, error))
    return FALSE;

  if (argc < 5)
    return usage_error (context, "RUNTIME must be specified", error);

  directory = argv[1];
  app_id = argv[2];
  sdk = argv[3];
  runtime = argv[4];
  if (argc >= 6)
    branch = argv[5];

  if (!flatpak_is_valid_name (app_id))
    return flatpak_fail (error, "'%s' is not a valid application name", app_id);

  if (!flatpak_is_valid_name (runtime))
    return flatpak_fail (error, "'%s' is not a valid runtime name", runtime);

  if (!flatpak_is_valid_name (sdk))
    return flatpak_fail (error, "'%s' is not a valid sdk name", sdk);

  if (!flatpak_is_valid_branch (branch))
    return flatpak_fail (error, "'%s' is not a valid branch name", branch);

  runtime_ref = flatpak_build_untyped_ref (runtime, branch, opt_arch);
  sdk_ref = flatpak_build_untyped_ref (sdk, branch, opt_arch);

  base = g_file_new_for_commandline_arg (directory);

  if (!gs_file_ensure_directory (base, TRUE, cancellable, error))
    return FALSE;

  files_dir = g_file_get_child (base, "files");
  if (opt_sdk_dir)
    usr_dir = g_file_get_child (base, opt_sdk_dir);
  else
    usr_dir = g_file_get_child (base, "usr");
  var_dir = g_file_get_child (base, "var");
  var_tmp_dir = g_file_get_child (var_dir, "tmp");
  var_run_dir = g_file_get_child (var_dir, "run");
  metadata_file = g_file_get_child (base, "metadata");

  if (!opt_update &&
      g_file_query_exists (files_dir, cancellable))
    return flatpak_fail (error, "Build directory %s already initialized", directory);

  if (opt_writable_sdk)
    {
      g_autofree char *full_sdk_ref = g_strconcat ("runtime/", sdk_ref, NULL);
      g_autoptr(GError) my_error = NULL;
      g_autoptr(GFile) sdk_deploy_files = NULL;
      g_autoptr(FlatpakDeploy) sdk_deploy = NULL;

      sdk_deploy = flatpak_find_deploy_for_ref (full_sdk_ref, cancellable, error);
      if (sdk_deploy == NULL)
        return FALSE;

      if (!gs_shutil_rm_rf (usr_dir, NULL, &my_error))
        {
          if (!g_error_matches (my_error, G_IO_ERROR, G_IO_ERROR_NOT_FOUND))
            {
              g_propagate_error (error, g_steal_pointer (&my_error));
              return FALSE;
            }

          g_clear_error (&my_error);
        }

      sdk_deploy_files = flatpak_deploy_get_files (sdk_deploy);
      if (!flatpak_cp_a (sdk_deploy_files, usr_dir, FLATPAK_CP_FLAGS_NO_CHOWN, cancellable, error))
        return FALSE;

      if (opt_sdk_extensions)
        {
          g_autoptr(GKeyFile) metakey = flatpak_deploy_get_metadata (sdk_deploy);
          GList *extensions = NULL, *l;

          /* We leak this on failure, as we have no autoptr for deep lists.. */
          extensions = flatpak_list_extensions (metakey,
                                                opt_arch,
                                                branch);

          for (i = 0; opt_sdk_extensions[i] != NULL; i++)
            {
              const char *requested_extension = opt_sdk_extensions[i];
              gboolean found = FALSE;

              for (l = extensions; l != NULL; l = l->next)
                {
                  FlatpakExtension *ext = l->data;

                  if (strcmp (ext->installed_id, requested_extension) == 0 ||
                      strcmp (ext->id, requested_extension) == 0)
                    {
                      g_autoptr(GFile) ext_deploy_dir = flatpak_find_deploy_dir_for_ref (ext->ref, cancellable, NULL);
                      if (ext_deploy_dir != NULL)
                        {
                          g_autoptr(GFile) ext_deploy_files = g_file_get_child (ext_deploy_dir, "files");
                          g_autoptr(GFile) target = g_file_resolve_relative_path (usr_dir, ext->directory);
                          g_autoptr(GFile) target_parent = g_file_get_parent (target);

                          if (!gs_file_ensure_directory (target_parent, TRUE, cancellable, error))
                            return FALSE;

                          /* An extension overrides whatever is there before, so we clean up first */
                          if (!gs_shutil_rm_rf (target, cancellable, error))
                            return FALSE;

                          if (!flatpak_cp_a (ext_deploy_files, target, FLATPAK_CP_FLAGS_NO_CHOWN, cancellable, error))
                            return FALSE;

                          found = TRUE;
                        }
                      else
                        {
                          g_list_free_full (extensions, (GDestroyNotify) flatpak_extension_free);
                          return flatpak_fail (error, "Requested extension %s not installed\n", requested_extension);
                        }
                    }
                }

              if (!found)
                return flatpak_fail (error, "No extension %s in sdk\n", requested_extension);
            }
          g_list_free_full (extensions, (GDestroyNotify) flatpak_extension_free);
        }
    }

  if (opt_var)
    {
      var_ref = flatpak_build_runtime_ref (opt_var, branch, opt_arch);

      var_deploy_base = flatpak_find_deploy_dir_for_ref (var_ref, cancellable, error);
      if (var_deploy_base == NULL)
        return FALSE;

      var_deploy_files = g_file_get_child (var_deploy_base, "files");
    }

  if (opt_update)
    return TRUE;

  if (!g_file_make_directory (files_dir, cancellable, error))
    return FALSE;

  if (var_deploy_files)
    {
      if (!gs_shutil_cp_a (var_deploy_files, var_dir, cancellable, error))
        return FALSE;
    }
  else
    {
      if (!g_file_make_directory (var_dir, cancellable, error))
        return FALSE;
    }

  if (!gs_file_ensure_directory (var_tmp_dir, FALSE, cancellable, error))
    return FALSE;

  if (!g_file_query_exists (var_run_dir, cancellable) &&
      !g_file_make_symbolic_link (var_run_dir, "/run", cancellable, error))
    return FALSE;


  metadata_contents = g_string_new ("[Application]\n");
  g_string_append_printf (metadata_contents,
                          "name=%s\n"
                          "runtime=%s\n"
                          "sdk=%s\n",
                          app_id, runtime_ref, sdk_ref);
  if (opt_tags != NULL)
    {
      g_string_append (metadata_contents, "tags=");
      for (i = 0; opt_tags[i] != NULL; i++)
        {
          g_string_append (metadata_contents, opt_tags[i]);
          g_string_append_c (metadata_contents, ';');
        }
      g_string_append_c (metadata_contents, '\n');
    }

  if (!g_file_replace_contents (metadata_file,
                                metadata_contents->str, metadata_contents->len, NULL, FALSE,
                                G_FILE_CREATE_REPLACE_DESTINATION,
                                NULL, cancellable, error))
    return FALSE;

  return TRUE;
}
gboolean
flatpak_builtin_build_init (int argc, char **argv, GCancellable *cancellable, GError **error)
{
  g_autoptr(GOptionContext) context = NULL;
  g_autoptr(GFile) var_deploy_files = NULL;
  g_autoptr(GFile) base = NULL;
  g_autoptr(GFile) files_dir = NULL;
  g_autoptr(GFile) usr_dir = NULL;
  g_autoptr(GFile) var_dir = NULL;
  g_autoptr(GFile) var_tmp_dir = NULL;
  g_autoptr(GFile) var_run_dir = NULL;
  g_autoptr(GFile) metadata_file = NULL;
  g_autoptr(GString) metadata_contents = NULL;
  g_autoptr(GError) my_error = NULL;
  const char *app_id;
  const char *directory;
  const char *sdk_pref;
  const char *runtime_pref;
  const char *default_branch = NULL;
  g_autofree char *runtime_ref = NULL;
  g_autofree char *var_ref = NULL;
  g_autofree char *sdk_ref = NULL;
  FlatpakKinds kinds;
  int i;
  g_autoptr(FlatpakDir) sdk_dir = NULL;
  g_autoptr(FlatpakDir) runtime_dir = NULL;
  gboolean is_app = FALSE;
  gboolean is_extension = FALSE;
  gboolean is_runtime = FALSE;

  context = g_option_context_new (_("DIRECTORY APPNAME SDK RUNTIME [BRANCH] - Initialize a directory for building"));
  g_option_context_set_translation_domain (context, GETTEXT_PACKAGE);

  if (!flatpak_option_context_parse (context, options, &argc, &argv, FLATPAK_BUILTIN_FLAG_NO_DIR, NULL, cancellable, error))
    return FALSE;

  if (argc < 5)
    return usage_error (context, _("RUNTIME must be specified"), error);

  if (argc > 6)
    return usage_error (context, _("Too many arguments"), error);

  directory = argv[1];
  app_id = argv[2];
  sdk_pref = argv[3];
  runtime_pref = argv[4];
  if (argc >= 6)
    default_branch = argv[5];

  if (opt_type != NULL)
    {
      if (strcmp (opt_type, "app") == 0)
        is_app = TRUE;
      else if (strcmp (opt_type, "extension") == 0)
        is_extension = TRUE;
      else if (strcmp (opt_type, "runtime") == 0)
        is_runtime = TRUE;
      else
        return flatpak_fail (error, _("'%s' is not a valid build type name, use app, runtime or extension"), opt_type);
    }
  else
    is_app = TRUE;

  if (!flatpak_is_valid_name (app_id, &my_error))
    return flatpak_fail (error, _("'%s' is not a valid application name: %s"), app_id, my_error->message);

  kinds = FLATPAK_KINDS_RUNTIME;
  sdk_dir = flatpak_find_installed_pref (sdk_pref, kinds, opt_arch, default_branch, TRUE, FALSE, FALSE, NULL,
                                         &sdk_ref, cancellable, error);
  if (sdk_dir == NULL)
    return FALSE;

  kinds = FLATPAK_KINDS_RUNTIME;
  if (is_extension)
    kinds |= FLATPAK_KINDS_APP;

  runtime_dir = flatpak_find_installed_pref (runtime_pref, kinds, opt_arch, default_branch, TRUE, FALSE, FALSE, NULL,
                                             &runtime_ref, cancellable, error);
  if (runtime_dir == NULL)
    return FALSE;

  base = g_file_new_for_commandline_arg (directory);

  if (!flatpak_mkdir_p (base, cancellable, error))
    return FALSE;

  files_dir = g_file_get_child (base, "files");
  if (opt_sdk_dir)
    usr_dir = g_file_get_child (base, opt_sdk_dir);
  else
    usr_dir = g_file_get_child (base, "usr");
  var_dir = g_file_get_child (base, "var");
  var_tmp_dir = g_file_get_child (var_dir, "tmp");
  var_run_dir = g_file_get_child (var_dir, "run");
  metadata_file = g_file_get_child (base, "metadata");

  if (!opt_update &&
      g_file_query_exists (files_dir, cancellable))
    return flatpak_fail (error, _("Build directory %s already initialized"), directory);

  if (opt_writable_sdk || is_runtime)
    {
      g_autoptr(GFile) sdk_deploy_files = NULL;
      g_autoptr(FlatpakDeploy) sdk_deploy = NULL;

      sdk_deploy = flatpak_dir_load_deployed (sdk_dir, sdk_ref, NULL, cancellable, error);
      if (sdk_deploy == NULL)
        return FALSE;

      if (!flatpak_rm_rf (usr_dir, NULL, &my_error))
        {
          if (!g_error_matches (my_error, G_IO_ERROR, G_IO_ERROR_NOT_FOUND))
            {
              g_propagate_error (error, g_steal_pointer (&my_error));
              return FALSE;
            }

          g_clear_error (&my_error);
        }

      sdk_deploy_files = flatpak_deploy_get_files (sdk_deploy);
      if (!flatpak_cp_a (sdk_deploy_files, usr_dir, FLATPAK_CP_FLAGS_NO_CHOWN, cancellable, error))
        return FALSE;

      if (opt_sdk_extensions &&
          !copy_extensions (sdk_deploy, default_branch, opt_sdk_extensions, usr_dir, cancellable, error))
        return FALSE;
    }

  if (opt_var)
    {
      var_ref = flatpak_build_runtime_ref (opt_var, default_branch, opt_arch);

      var_deploy_files = flatpak_find_files_dir_for_ref (var_ref, cancellable, error);
      if (var_deploy_files == NULL)
        return FALSE;
    }

  if (opt_update)
    return TRUE;

  if (!g_file_make_directory (files_dir, cancellable, error))
    return FALSE;

  if (opt_base)
    {
      const char *base_branch;
      g_autofree char *base_ref = NULL;
      g_autoptr(GFile) base_deploy_files = NULL;
      g_autoptr(FlatpakDeploy) base_deploy = NULL;

      base_branch = opt_base_version ? opt_base_version : "master";
      base_ref = flatpak_build_app_ref (opt_base, base_branch, opt_arch);
      base_deploy = flatpak_find_deploy_for_ref (base_ref, cancellable, error);
      if (base_deploy == NULL)
        return FALSE;

      base_deploy_files = flatpak_deploy_get_files (base_deploy);
      if (!flatpak_cp_a (base_deploy_files, files_dir,
                         FLATPAK_CP_FLAGS_MERGE | FLATPAK_CP_FLAGS_NO_CHOWN,
                         cancellable, error))
        return FALSE;


      if (opt_base_extensions &&
          !copy_extensions (base_deploy, base_branch, opt_base_extensions, files_dir, cancellable, error))
        return FALSE;
    }

  if (var_deploy_files)
    {
      if (!flatpak_cp_a (var_deploy_files, var_dir, FLATPAK_CP_FLAGS_NONE, cancellable, error))
        return FALSE;
    }
  else
    {
      if (!g_file_make_directory (var_dir, cancellable, error))
        return FALSE;
    }

  if (!flatpak_mkdir_p (var_tmp_dir, cancellable, error))
    return FALSE;

  if (!g_file_query_exists (var_run_dir, cancellable) &&
      !g_file_make_symbolic_link (var_run_dir, "/run", cancellable, error))
    return FALSE;


  metadata_contents = g_string_new ("");
  if (is_app)
    g_string_append (metadata_contents, "[Application]\n");
  else
    g_string_append (metadata_contents, "[Runtime]\n");

  g_string_append_printf (metadata_contents,
                          "name=%s\n",
                          app_id);

  /* The "runtime" can be an app in case we're building an extension */
  if (g_str_has_prefix (runtime_ref, "runtime/"))
    g_string_append_printf (metadata_contents,
                            "runtime=%s\n",
                            runtime_ref + strlen ("runtime/"));

  if (g_str_has_prefix (sdk_ref, "runtime/"))
    g_string_append_printf (metadata_contents,
                            "sdk=%s\n",
                            sdk_ref + strlen ("runtime/"));

  if (opt_tags != NULL)
    {
      g_string_append (metadata_contents, "tags=");
      for (i = 0; opt_tags[i] != NULL; i++)
        {
          g_string_append (metadata_contents, opt_tags[i]);
          g_string_append_c (metadata_contents, ';');
        }
      g_string_append_c (metadata_contents, '\n');
    }

  if (is_extension)
    g_string_append_printf (metadata_contents,
                            "\n"
                            "[ExtensionOf]\n"
                            "ref=%s\n",
                            runtime_ref);

  if (!g_file_replace_contents (metadata_file,
                                metadata_contents->str, metadata_contents->len, NULL, FALSE,
                                G_FILE_CREATE_REPLACE_DESTINATION,
                                NULL, cancellable, error))
    return FALSE;

  return TRUE;
}