int main(){
char fileName[20];
char errorLogFileName[20];
createBotDirectory(errorLogFileName);
createFileName(fileName, 1);
genFile(fileName);
if(buildFile(fileName, errorLogFileName)!=-1){
runFile(fileName, errorLogFileName);
}else{
printf("Build error\n");
}
}
void NewGenomeFile::loadGenomeFileIntoMap() {
ifstream genFile(_genomeFileName.c_str());
if (!genFile.good()) {
cerr << "Error: Can't open genome file" << _genomeFileName << "Exiting..." << endl;
exit(1);
}
string sLine;
Tokenizer fieldTokens;
CHRPOS chrSize = 0;
string chrName;
while (!genFile.eof()) {
sLine.clear();
chrSize = 0;
chrName.clear();
getline(genFile, sLine);
int numFields = fieldTokens.tokenize(sLine.c_str());
// allow use of .fai files.
if (numFields < 2) {
continue;
}
chrName = fieldTokens.getElem(0);
chrSize = str2chrPos(fieldTokens.getElem(1));
_maxId++;
_chromSizeIds[chrName] = pair<CHRPOS, int>(chrSize, _maxId);
_startOffsets.push_back(_genomeLength);
_genomeLength += chrSize;
_chromList.push_back(chrName);
}
if (_maxId == -1) {
cerr << "Error: The genome file " << _genomeFileName << " has no valid entries. Exiting." << endl;
exit(1);
}
// Special: BAM files can have unmapped reads, which show as no chromosome, or an empty chrom string.
// Add in an empty chrom so these don't error.
_maxId++;
_chromSizeIds[""] = pair<CHRPOS, int>(0, _maxId);
_chromList.push_back("");
_startOffsets.push_back(_genomeLength); //insert the final length as the last element
//to help with the lower_bound call in the projectOnGenome method.
genFile.close();
}
void step(ulen rep)
{
genFilter();
FileNameFilter filter(getFilter());
for(; rep ;rep--)
{
genFilterFile();
if( !filter(getFile()) )
{
Printf(Exception,"fail 1 #; #;",getFilter(),getFile());
}
genFile();
if( filter(getFile())!=Match(getFilter(),getFile()) )
{
Printf(Exception,"fail 2 #; #;",getFilter(),getFile());
}
}
}
void NewGenomeFile::loadGenomeFileIntoMap() {
ifstream genFile(_genomeFileName.c_str());
if (!genFile.good()) {
cerr << "Error: Can't open genome file" << _genomeFileName << "Exiting..." << endl;
exit(1);
}
string sLine;
Tokenizer fieldTokens;
CHRPOS chrSize = 0;
QuickString chrName;
while (!genFile.eof()) {
sLine.clear();
chrSize = 0;
chrName.clear();
getline(genFile, sLine);
int numFields = fieldTokens.tokenize(sLine.c_str());
if (numFields != 2) {
continue;
}
chrName = fieldTokens.getElem(0);
chrSize = str2chrPos(fieldTokens.getElem(1));
_maxId++;
_chromSizeIds[chrName] = pair<CHRPOS, int>(chrSize, _maxId);
_startOffsets.push_back(_genomeLength);
_genomeLength += chrSize;
_chromList.push_back(chrName);
}
if (_maxId == -1) {
cerr << "Error: The genome file " << _genomeFileName << " has no valid entries. Exiting." << endl;
exit(1);
}
_startOffsets.push_back(_genomeLength); //insert the final length as the last element
//to help with the lower_bound call in the projectOnGenome method.
genFile.close();
}
void my1Form::OnGenerate(wxCommandEvent& WXUNUSED(event))
{
wxArrayString cList;
wxString cBuffer, cConvert;
bool cUseASM = false;
wxFileDialog genFileDialog(this, wxT("Generated Filename"), wxT(""), wxT(""),
wxT("ASM File (*.asm)|*.asm|C/C++ File (*.c;*.cpp)|*.c;*.cpp"), wxFD_SAVE|wxFD_OVERWRITE_PROMPT);
if(genFileDialog.ShowModal()==wxID_OK)
{
if(genFileDialog.GetFilterIndex()==0)
{
cBuffer = wxT("\tdfb ");
cUseASM = true;
}
else
{
cBuffer = wxT("\t0x");
cList.Add(wxT("unsigned char cData[]={"));
}
unsigned char *pPixel = mCanvas->mCurrentImage->GetData();
int cCount = 0;
for(int cLoop=0;cLoop<mCanvas->mImageBankSize;cLoop++)
{
if(cUseASM)
{
cConvert.Printf(wxT("; Start Bank %d"),cLoop);
}
else
{
cConvert.Printf(wxT("/* Start Bank %d"),cLoop);
cConvert << wxT(" */");
}
cList.Add(cConvert);
for(int cLoop1=0;cLoop1<mCanvas->mImageWidth;cLoop1++)
{
int cY = cLoop*8;
unsigned char cByte = 0x00, cMask = 0x01;
for(int cLoop2=0;cLoop2<8;cLoop2++)
{
if(pPixel[((cY+cLoop2) * mCanvas->mImageWidth + cLoop1) * 3]==PIXEL_GRAY_BLACK)
{
cByte |= cMask;
}
cMask <<=1;
}
if(cByte>0x9f&&cUseASM)
cConvert.Printf(wxT("%03X"),cByte);
else
cConvert.Printf(wxT("%02X"),cByte);
cBuffer << cConvert;
cCount++;
if(cUseASM)
{
if(cCount==mCanvas->mImageBankSize)
{
cBuffer << wxT("h");
cList.Add(cBuffer);
cBuffer = wxT("\tdfb ");
cCount = 0;
}
else
{
cBuffer << wxT("h, ");
}
}
else
{
if(cCount==mCanvas->mImageBankSize)
{
cBuffer << wxT(",");
cList.Add(cBuffer);
cBuffer = wxT("\t0x");
cCount = 0;
}
else
{
cBuffer << wxT(", 0x");
}
}
}
}
if(!cUseASM)
{
cBuffer = cList[cList.GetCount()-1];
cList.RemoveAt(cList.GetCount()-1);
cBuffer.RemoveLast(); // remove trailing comma
cList.Add(cBuffer);
cList.Add(wxT("};"));
}
wxTextFile genFile(genFileDialog.GetPath());
if(genFile.Exists())
{
genFile.Open(genFileDialog.GetPath());
genFile.Clear();
}
else
{
genFile.Create(genFileDialog.GetPath());
}
for(int cIndex=0;cIndex<(int)(cList.GetCount());cIndex++)
{
genFile.AddLine(cList[cIndex]);
}
genFile.Write();
genFile.Close();
cBuffer.Printf(wxT("LCD Data Table Created in %s."),genFileDialog.GetPath().c_str());
wxMessageBox(cBuffer,wxT("Just FYI"),wxOK|wxICON_INFORMATION,this);
}
}