C++ (Cpp) getGenomeInfo示例

示例#1

static void ccdsMkTables(char *ccdsDb, char *hgDb, int ccdsBuildId, char *ccdsInfoOut, char *ccdsNotesOut, char *ccdsGeneOut)
/* create tables for hg db from imported CCDS database */
{
if (verboseLevel() >= 2)
    sqlMonitorEnable(JKSQL_TRACE);
struct sqlConnection *ccdsConn = ccdsSqlConn(ccdsDb);
struct genomeInfo *genome = getGenomeInfo(hgDb, ccdsBuildId);
struct hash *infoCcds = hashNew(20);
struct hash *geneCcds = hashNew(20);
struct hash* ignoreTbl = buildIgnoreTbl(ccdsConn, genome);

char ccdsInfoFile[PATH_LEN], ccdsInfoTbl[PATH_LEN];
ccdsGetTblFileNames(ccdsInfoOut, ccdsInfoTbl, ccdsInfoFile);
createCcdsInfo(ccdsConn, ccdsInfoFile, genome, ignoreTbl, infoCcds);

char ccdsNotesFile[PATH_LEN], ccdsNotesTbl[PATH_LEN];
ccdsGetTblFileNames(ccdsNotesOut, ccdsNotesTbl, ccdsNotesFile);
createCcdsNotes(ccdsConn, ccdsNotesFile, genome, infoCcds);

char ccdsGeneFile[PATH_LEN], ccdsGeneTbl[PATH_LEN];
ccdsGetTblFileNames(ccdsGeneOut, ccdsGeneTbl, ccdsGeneFile);
createCcdsGene(ccdsConn, ccdsGeneFile, genome, ignoreTbl, geneCcds);

sqlDisconnect(&ccdsConn);
sqlMonitorDisable();

gotCcdsValidate(infoCcds, geneCcds);

if (loadDb)
    loadTables(hgDb, ccdsInfoTbl, ccdsInfoFile, ccdsGeneTbl, ccdsGeneFile, ccdsNotesTbl, ccdsNotesFile);
}

示例#2

文件： mdps.cpp 项目： junks/GenomicsProject

void handle_genome_info_query(int sock, msgpack::unpacker& unpack)
{
#ifdef DEBUG
    std::cout << "mdps.cpp: handling genome info query.\n";
#endif
    std::string name;
    read(unpack, name);
    
    const GenomeInfo& info = getGenomeInfo(name);
    
    
    msgpack::sbuffer sbuf;
    message_id_t msg_id = STORE_GENOME_INFO_RESPONSE_ID;
    msgpack::pack(&sbuf, msg_id);
    msgpack::pack(&sbuf, info);
    sendBuffer(sock, sbuf);
}