// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FitFeatureData::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setNewEnsembleArrayArray(reader->readDataArrayPath("NewEnsembleArrayArray", getNewEnsembleArrayArray()));
  setBiasedFeaturesArrayPath(reader->readDataArrayPath("BiasedFeaturesArrayPath", getBiasedFeaturesArrayPath() ) );
  setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
  setSelectedFeatureArrayPath( reader->readDataArrayPath( "SelectedFeatureArrayPath", getSelectedFeatureArrayPath() ) );
  setDistributionType( reader->readValue( "DistributionType", getDistributionType() ) );
  setRemoveBiasedFeatures( reader->readValue( "RemoveBiasedFeatures", getRemoveBiasedFeatures() ) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeatureHistogram::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setNewEnsembleArrayArrayPath(reader->readDataArrayPath("NewEnsembleArrayArrayPath", getNewEnsembleArrayArrayPath()));
  setBiasedFeaturesArrayPath(reader->readDataArrayPath("BiasedFeaturesArrayPath", getBiasedFeaturesArrayPath() ) );
  setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
  setSelectedFeatureArrayPath( reader->readDataArrayPath( "SelectedFeatureArrayPath", getSelectedFeatureArrayPath() ) );
  setNumberOfBins( reader->readValue( "NumberOfBins", getNumberOfBins() ) );
  setRemoveBiasedFeatures( reader->readValue( "RemoveBiasedFeatures", getRemoveBiasedFeatures() ) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeatureClustering::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
  reader->openFilterGroup(this, index);
  setCellEnsembleAttributeMatrixName(reader->readDataArrayPath("CellEnsembleAttributeMatrixName", getCellEnsembleAttributeMatrixName() ) );
  setNumberOfBins( reader->readValue( "NumberOfBins", getNumberOfBins() ) );
  setNewEnsembleArrayArrayName(reader->readString("NewEnsembleArrayArrayName", getNewEnsembleArrayArrayName() ) );
  setMaxMinArrayName(reader->readString("MaxMinArrayName", getMaxMinArrayName() ) );
  setClusteringListArrayName(reader->readString("ClusteringListArrayName", getClusteringListArrayName() ) );
  setCentroidsArrayPath(reader->readDataArrayPath("CentroidsArrayPath", getCentroidsArrayPath() ) );
  setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
  setEquivalentDiametersArrayPath(reader->readDataArrayPath("EquivalentDiametersArrayPath", getEquivalentDiametersArrayPath() ) );
  setPhaseNumber( reader->readValue("PhaseNumber", getPhaseNumber() ) );
  setBiasedFeaturesArrayPath(reader->readDataArrayPath("BiasedFeaturesArrayPath", getBiasedFeaturesArrayPath() ) );
  setRemoveBiasedFeatures( reader->readValue( "RemoveBiasedFeatures", getRemoveBiasedFeatures() ) );
  reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FitFeatureData::setupFilterParameters()
{
  FilterParameterVector parameters;
  {
    ChoiceFilterParameter::Pointer parameter = ChoiceFilterParameter::New();
    parameter->setHumanLabel("Distribution Type");
    parameter->setPropertyName("DistributionType");

    QVector<QString> choices;
    choices.push_back("Beta");
    choices.push_back("Log-Normal");
    choices.push_back("Power Law");
    parameter->setChoices(choices);
    parameter->setCategory(FilterParameter::Parameter);
    parameters.push_back(parameter);
  }
  QStringList linkedProps("BiasedFeaturesArrayPath");
  parameters.push_back(LinkedBooleanFilterParameter::New("Remove Biased Features", "RemoveBiasedFeatures", getRemoveBiasedFeatures(), linkedProps, FilterParameter::Parameter));
  parameters.push_back(SeparatorFilterParameter::New("Feature Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::Defaults::AnyPrimitive, 1, SIMPL::AttributeMatrixObjectType::Feature);
    parameters.push_back(DataArraySelectionFilterParameter::New("Feature Array to Fit", "SelectedFeatureArrayPath", getSelectedFeatureArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixObjectType::Feature);
    parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "FeaturePhasesArrayPath", getFeaturePhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateCategoryRequirement(SIMPL::TypeNames::Bool, 1, SIMPL::AttributeMatrixObjectType::Feature);
    parameters.push_back(DataArraySelectionFilterParameter::New("Biased Features", "BiasedFeaturesArrayPath", getBiasedFeaturesArrayPath(), FilterParameter::RequiredArray, req));
  }
  parameters.push_back(SeparatorFilterParameter::New("Ensemble Data", FilterParameter::CreatedArray));
  {
    DataArrayCreationFilterParameter::RequirementType req = DataArrayCreationFilterParameter::CreateRequirement(SIMPL::AttributeMatrixObjectType::Ensemble);
    parameters.push_back(DataArrayCreationFilterParameter::New("Fit Parameters", "NewEnsembleArrayArray", getNewEnsembleArrayArray(), FilterParameter::CreatedArray, req));
  }
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeatureClustering::setupFilterParameters()
{
  FilterParameterVector parameters;
  parameters.push_back(IntFilterParameter::New("Number of Bins for RDF", "NumberOfBins", getNumberOfBins(), FilterParameter::Parameter));
  parameters.push_back(IntFilterParameter::New("Phase Index", "PhaseNumber", getPhaseNumber(), FilterParameter::Parameter));
  QStringList linkedProps("BiasedFeaturesArrayPath");
  parameters.push_back(LinkedBooleanFilterParameter::New("Remove Biased Features", "RemoveBiasedFeatures", getRemoveBiasedFeatures(), linkedProps, FilterParameter::Parameter));
  parameters.push_back(SeparatorFilterParameter::New("Cell Feature Data", FilterParameter::RequiredArray));
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Float, 1, SIMPL::AttributeMatrixType::CellFeature, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Equivalent Diameters", "EquivalentDiametersArrayPath", getEquivalentDiametersArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::CellFeature, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "FeaturePhasesArrayPath", getFeaturePhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Float, 3, SIMPL::AttributeMatrixType::CellFeature, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Centroids", "CentroidsArrayPath", getCentroidsArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Bool, 1, SIMPL::AttributeMatrixType::CellFeature, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(DataArraySelectionFilterParameter::New("Biased Features", "BiasedFeaturesArrayPath", getBiasedFeaturesArrayPath(), FilterParameter::RequiredArray, req));
  }
  parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::RequiredArray));
  {
    AttributeMatrixSelectionFilterParameter::RequirementType amReq = AttributeMatrixSelectionFilterParameter::CreateRequirement(SIMPL::AttributeMatrixType::CellEnsemble, SIMPL::GeometryType::ImageGeometry);
    parameters.push_back(AttributeMatrixSelectionFilterParameter::New("Cell Ensemble Attribute Matrix", "CellEnsembleAttributeMatrixName", getCellEnsembleAttributeMatrixName(), FilterParameter::RequiredArray, amReq));
  }
  parameters.push_back(SeparatorFilterParameter::New("Cell Feature Data", FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Clustering List", "ClusteringListArrayName", getClusteringListArrayName(), FilterParameter::CreatedArray));
  parameters.push_back(SeparatorFilterParameter::New("Cell Ensemble Data", FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Radial Distribution Function", "NewEnsembleArrayArrayName", getNewEnsembleArrayArrayName(), FilterParameter::CreatedArray));
  parameters.push_back(StringFilterParameter::New("Max and Min Separation Distances", "MaxMinArrayName", getMaxMinArrayName(), FilterParameter::CreatedArray));
  setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeatureHistogram::setupFilterParameters()
{
  FilterParameterVector parameters;

  {
    ChoiceFilterParameter::Pointer parameter = ChoiceFilterParameter::New();
    parameter->setHumanLabel("Number of Bins");
    parameter->setPropertyName("NumberOfBins");

    parameters.push_back(parameter);
  }
  QStringList linkedProps("BiasedFeaturesArrayPath");
  parameters.push_back(LinkedBooleanFilterParameter::New("Remove Biased Features", "RemoveBiasedFeatures", getRemoveBiasedFeatures(), linkedProps, FilterParameter::Parameter));
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("Feature Array To Bin", "SelectedFeatureArrayPath", getSelectedFeatureArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("FeaturePhases", "FeaturePhasesArrayPath", getFeaturePhasesArrayPath(), FilterParameter::RequiredArray, req));
  }
  {
    DataArraySelectionFilterParameter::RequirementType req;
    parameters.push_back(DataArraySelectionFilterParameter::New("BiasedFeatures", "BiasedFeaturesArrayPath", getBiasedFeaturesArrayPath(), FilterParameter::RequiredArray, req));
  }

  {
    DataArrayCreationFilterParameter::RequirementType req;
    parameters.push_back(DataArrayCreationFilterParameter::New("New Ensemble Array", "NewEnsembleArrayArrayPath", getNewEnsembleArrayArrayPath(), FilterParameter::CreatedArray, req));
  }

  setFilterParameters(parameters);
}
示例#7
0
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FitFeatureData::setupFilterParameters()
{
  FilterParameterVector parameters;
  {
    ChoiceFilterParameter::Pointer parameter = ChoiceFilterParameter::New();
    parameter->setHumanLabel("Distribution Type");
    parameter->setPropertyName("DistributionType");

    QVector<QString> choices;
    choices.push_back("Beta");
    choices.push_back("Log-Normal");
    choices.push_back("Power Law");
    parameter->setChoices(choices);
    parameter->setCategory(FilterParameter::Parameter);
    parameters.push_back(parameter);
  }
  QStringList linkedProps("BiasedFeaturesArrayPath");
  parameters.push_back(LinkedBooleanFilterParameter::New("Remove Biased Features", "RemoveBiasedFeatures", getRemoveBiasedFeatures(), linkedProps, FilterParameter::Parameter));
  parameters.push_back(SeparatorFilterParameter::New("Feature Data", FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Feature Array to Fit", "SelectedFeatureArrayPath", getSelectedFeatureArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Phases", "FeaturePhasesArrayPath", getFeaturePhasesArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(DataArraySelectionFilterParameter::New("Biased Features", "BiasedFeaturesArrayPath", getBiasedFeaturesArrayPath(), FilterParameter::RequiredArray));
  parameters.push_back(SeparatorFilterParameter::New("Ensemble Data", FilterParameter::CreatedArray));
  parameters.push_back(DataArrayCreationFilterParameter::New("Fit Parameters", "NewEnsembleArrayArray", getNewEnsembleArrayArray(), FilterParameter::CreatedArray));
  setFilterParameters(parameters);
}