C++ (Cpp) gth_input_echo_genomic_description示例

示例#1

文件： xml_final_sa_visitor.c 项目： 9beckert/TIR

static void xml_showgthgenomicinformation(GthSA *sa,
                                          GthInput *input,
                                          unsigned int indentlevel,
                                          GtFile *outfp)
{
  gt_assert(gth_sa_gen_file_num(sa) != GT_UNDEF_ULONG);

  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "<gDNA_segment>\n");
  indentlevel++;
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "<template temp_file=\"%s\" temp_id=\"%s\" "
                            "temp_strand=\"%c\" temp_description=\"",
                     gth_input_get_genomic_filename(input,
                                                    gth_sa_gen_file_num(sa)),
                     gth_sa_gen_id(sa),
                     gth_sa_gen_strand_char(sa));

  gth_input_echo_genomic_description(input, gth_sa_gen_file_num(sa),
                                     gth_sa_gen_seq_num(sa), outfp);

  gt_file_xprintf(outfp, "\">\n");
  indentlevel++;
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "<position start=\"%lu\" stop=\"%lu\"/>\n",
                     gth_sa_gen_dp_start_show(sa),
                     gth_sa_gen_dp_end_show(sa));
  indentlevel--;
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "</template>\n");
  indentlevel--;
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "</gDNA_segment>\n");
}

示例#2

文件： sa.c 项目： AnnSeidel/genometools

void gth_sa_echo_genomic_description(const GthSA *sa, GthInput *input,
                                     GtFile *outfp)
{
  gt_assert(sa && input);
  gth_input_echo_genomic_description(input, sa->gen_file_num,
                                     sa->gen_seq_num, outfp);
}