/// Shifts the data in the linked block from \p start to \p start + \p n.
memblock::iterator memblock::insert (iterator start, size_type n)
{
const uoff_t ip = start - begin();
assert (ip <= size());
resize (size() + n, false);
memlink::insert (iat(ip), n);
return (iat (ip));
}
/// Shifts the data in the linked block from \p start + \p n to \p start.
memblock::iterator memblock::erase (iterator start, size_type n)
{
const uoff_t ep = start - begin();
assert (ep + n <= size());
memlink::erase (start, n);
memlink::resize (size() - n);
return (iat (ep));
}
CrsGraph_AMD::NewTypeRef
CrsGraph_AMD::
operator()( OriginalTypeRef orig )
{
origObj_ = &orig;
int n = orig.NumMyRows();
int nnz = orig.NumMyNonzeros();
//create std CRS format
std::vector<int> ia(n+1,0);
std::vector<int> ja(nnz);
int cnt;
for( int i = 0; i < n; ++i )
{
int * tmpP = &ja[ia[i]];
orig.ExtractMyRowCopy( i, nnz-ia[i], cnt, tmpP );
ia[i+1] = ia[i] + cnt;
}
//trim down to local only
std::vector<int> iat(n+1);
std::vector<int> jat(nnz);
int loc = 0;
for( int i = 0; i < n; ++i )
{
iat[i] = loc;
for( int j = ia[i]; j < ia[i+1]; ++j )
{
if( ja[j] < n )
jat[loc++] = ja[j];
else
break;
}
}
iat[n] = loc;
if( verbose_ )
{
std::cout << "Orig Graph\n";
std::cout << orig << std::endl;
std::cout << "-----------------------------------------\n";
std::cout << "CRS Format Graph\n";
std::cout << "-----------------------------------------\n";
for( int i = 0; i < n; ++i )
{
std::cout << i << ": " << iat[i+1] << ": ";
for( int j = iat[i]; j<iat[i+1]; ++j )
std::cout << " " << jat[j];
std::cout << std::endl;
}
std::cout << "-----------------------------------------\n";
}
std::vector<int> perm(n);
std::vector<double> info(AMD_INFO);
amd_order( n, &iat[0], &jat[0], &perm[0], NULL, &info[0] );
if( info[AMD_STATUS] == AMD_INVALID )
std::cout << "AMD ORDERING: Invalid!!!!\n";
if( verbose_ )
{
std::cout << "-----------------------------------------\n";
std::cout << "AMD Output\n";
std::cout << "-----------------------------------------\n";
std::cout << "STATUS: " << info[AMD_STATUS] << std::endl;
std::cout << "SYMM: " << info[AMD_SYMMETRY] << std::endl;
std::cout << "N: " << info[AMD_N] << std::endl;
std::cout << "NZ: " << info[AMD_NZ] << std::endl;
std::cout << "SYMM: " << info[AMD_SYMMETRY] << std::endl;
std::cout << "NZDIAG: " << info[AMD_NZDIAG] << std::endl;
std::cout << "NZ A+At: " << info[AMD_NZ_A_PLUS_AT] << std::endl;
std::cout << "NDENSE: " << info[AMD_SYMMETRY] << std::endl;
std::cout << "Perm\n";
for( int i = 0; i<n; ++i )
std::cout << perm[i] << std::endl;
std::cout << "-----------------------------------------\n";
}
//Generate New Domain and Range Maps
//for now, assume they start out as identical
const Epetra_BlockMap & OldMap = orig.RowMap();
int nG = orig.NumGlobalRows();
std::vector<int> newElements( n );
for( int i = 0; i < n; ++i )
newElements[i] = OldMap.GID( perm[i] );
NewMap_ = new Epetra_Map( nG, n, &newElements[0], OldMap.IndexBase(), OldMap.Comm() );
if( verbose_ )
{
std::cout << "Old Map\n";
std::cout << OldMap << std::endl;
std::cout << "New Map\n";
std::cout << *NewMap_ << std::endl;
}
//Generate New Graph
NewGraph_ = new Epetra_CrsGraph( Copy, *NewMap_, 0 );
Epetra_Import Importer( *NewMap_, OldMap );
NewGraph_->Import( orig, Importer, Insert );
NewGraph_->FillComplete();
if( verbose_ )
{
std::cout << "New CrsGraph\n";
std::cout << *NewGraph_ << std::endl;
}
newObj_ = NewGraph_;
return *NewGraph_;
}
//==============================================================================
int Ifpack2_AMDReordering::Compute(const Ifpack2_Graph& Graph)
{
IsComputed_ = false;
NumMyRows_ = Graph.NumMyRows();
int NumNz = Graph.NumMyNonzeros();
if (NumMyRows_ == 0)
IFPACK2_CHK_ERR(-1); // strange graph this one
// Extract CRS format
vector<int> ia(NumMyRows_+1,0);
vector<int> ja(NumNz);
int cnt;
for( int i = 0; i < NumMyRows_; ++i )
{
int * tmpP = &ja[ia[i]];
Graph.ExtractMyRowCopy( i, NumNz-ia[i], cnt, tmpP );
ia[i+1] = ia[i] + cnt;
}
// Trim down to local only
vector<int> iat(NumMyRows_+1);
vector<int> jat(NumNz);
int loc = 0;
for( int i = 0; i < NumMyRows_; ++i )
{
iat[i] = loc;
for( int j = ia[i]; j < ia[i+1]; ++j )
{
if( ja[j] < NumMyRows_ )
jat[loc++] = ja[j];
else
break;
}
}
iat[NumMyRows_] = loc;
// Compute AMD permutation
Reorder_.resize(NumMyRows_);
vector<double> info(AMD_INFO);
amesos_amd_order( NumMyRows_, &iat[0], &jat[0], &Reorder_[0], NULL, &info[0] );
if( info[AMD_STATUS] == AMD_INVALID )
cout << "AMD ORDERING: Invalid!!!!\n";
// Build inverse reorder (will be used by ExtractMyRowCopy()
InvReorder_.resize(NumMyRows_);
for (int i = 0 ; i < NumMyRows_ ; ++i)
InvReorder_[i] = -1;
for (int i = 0 ; i < NumMyRows_ ; ++i)
InvReorder_[Reorder_[i]] = i;
for (int i = 0 ; i < NumMyRows_ ; ++i) {
if (InvReorder_[i] == -1)
IFPACK2_CHK_ERR(-1);
}
IsComputed_ = true;
return(0);
}
inline void replace (uoff_t rp, size_type n, size_type count, value_type c) { replace (iat(rp), iat(rp + n), count, c); }
inline void replace (uoff_t rp, size_type n, const_pointer s, size_type slen) { replace (iat(rp), iat(rp + n), s, s + slen); }
inline void replace (uoff_t rp, size_type n, const_pointer s) { replace (iat(rp), iat(rp + n), string(s)); }
inline void replace (uoff_t rp, size_type n, const string& s) { replace (iat(rp), iat(rp + n), s); }
inline void replace (uoff_t rp, size_type n, const string& s, uoff_t sp, size_type slen) { replace (iat(rp), iat(rp + n), s.iat(sp), s.iat(sp + slen)); }
inline void eraser (uoff_t first, uoff_t last) { erase (iat(first), iat(last)); }
inline void insert (uoff_t ip, const string& s, uoff_t sp, size_type slen) { insert (iat(ip), s.iat(sp), s.iat(sp + slen)); }
inline void insert (uoff_t ip, size_type n, value_type c) { insert (iat(ip), c, n); }
inline void insert (uoff_t ip, const_pointer s, size_type nlen) { insert (iat(ip), s, s + nlen); }
uintptr_t iat(const wchar_t* module_name, const char* dll_name, const char* api_name, uintptr_t new_function)
{
return iat(::GetModuleHandleW(module_name), dll_name, api_name, new_function);
}