int MANGLE(kdtree_dualtree_rangesearch)(kdtree_t* kd1, kdtree_t* kd2,
double maxdist,
rangesearch_callback callback, void* baton) {
int xnode, ynode;
il* nodes;
il* leaves;
if (kdtree_treetype(kd1) != kdtree_treetype(kd2)) {
ERROR("Trees must be the same type.");
return -1;
}
if (!kd1->split.any || !kd2->split.any) {
ERROR("This function only supports splitting-plane trees.\n");
return -1;
}
nodes = il_new(256);
leaves = il_new(256);
// root nodes.
xnode = ynode = 0;
if (KD_IS_LEAF(xtree, xnode))
il_append(leaves, xnode);
else
il_append(nodes, xnode);
dualtree_recurse(xtree, ytree, nodes, leaves, ynode, callbacks);
il_free(nodes);
il_free(leaves);
return 0;
}
void test_il_dupe(CuTest* tc) {
int i, N=63;
il* x = il_new(4), *y;
for (i=0;i<N;i++)
il_push(x,i);
y = il_dupe(x);
for (i=0;i<N;i++)
CuAssertIntEquals(tc, i, il_get(y, i));
for (i=0;i<N;i++)
il_pop(x);
CuAssertIntEquals(tc, N, il_size(y));
CuAssertIntEquals(tc, il_check_consistency(x), 0);
il_free(x);
il_free(y);
}
void test_il_insert_unique_ascending(CuTest* tc) {
int i;
il* x = il_new(4);
il_insert_unique_ascending(x,2);
il_insert_unique_ascending(x,4);
il_insert_unique_ascending(x,4);
il_insert_unique_ascending(x,7);
il_insert_unique_ascending(x,4);
il_insert_unique_ascending(x,4);
il_insert_unique_ascending(x,8);
il_insert_unique_ascending(x,5);
il_insert_unique_ascending(x,0);
il_insert_unique_ascending(x,5);
il_insert_unique_ascending(x,5);
il_insert_unique_ascending(x,5);
il_insert_unique_ascending(x,4);
il_insert_unique_ascending(x,5);
il_insert_unique_ascending(x,6);
il_insert_unique_ascending(x,7);
il_insert_unique_ascending(x,7);
il_insert_unique_ascending(x,7);
il_insert_unique_ascending(x,7);
il_insert_unique_ascending(x,1);
il_insert_unique_ascending(x,1);
il_insert_unique_ascending(x,3);
il_insert_unique_ascending(x,1);
il_insert_unique_ascending(x,1);
il_insert_unique_ascending(x,0);
il_print(x);
CuAssertIntEquals(tc, il_check_consistency(x), 0);
CuAssertIntEquals(tc, il_check_sorted_ascending(x, 1), 0);
for (i=0;i<il_size(x);i++)
CuAssertIntEquals(tc, i, il_get(x, i));
il_free(x);
}
struct char_array_list *translate(struct char_array *mrna)
{
struct char_array_list *proteins = new_char_array_list();
size_t dna_len = strlen(mrna->data);
int i;
for (i=0; i<3; i++)
{
char *frame_start = mrna->data+i;
printf("Frame from: %s\n", frame_start);
struct int_list *starts = get_starts(frame_start, dna_len-i);
//printf("Starts:");
//log_il(starts);
if (starts->count == 0)
{
il_free(starts);
continue;
}
struct int_list *ends = get_ends(frame_start, dna_len-i);
//printf("Ends:");
//log_il(ends);
if (ends->count == 0)
{
il_free(starts);
il_free(ends);
continue;
}
int last_end = il_get(ends, ends->count-1);
int last_possible_start = last_end - 3;
int starts_ix;
for (starts_ix=0; starts_ix<starts->count-1; starts_ix++)
{
int index = il_get(starts, starts_ix);
if (index >= last_possible_start)
{
break;
}
add_protein(proteins, frame_start+index);
}
il_free(starts);
il_free(ends);
}
return proteins;
}
void test_il(CuTest* tc) {
il* x = il_new(10);
il_push(x,10);
CuAssertIntEquals(tc, 10, il_get(x, 0));
il_push(x,20);
CuAssertIntEquals(tc, 10, il_get(x, 0));
CuAssertIntEquals(tc, 20, il_get(x, 1));
il_free(x);
}
void test_il_size(CuTest* tc) {
il* x = il_new(10);
int i, N = 100;
for (i=0; i<N; i++) {
il_push(x, i);
CuAssertIntEquals(tc, i+1, il_size(x));
}
il_free(x);
}
void test_il_push_pop2(CuTest* tc) {
int i, N=100;
il* x = il_new(10);
for (i=0; i<N; i++)
il_push(x,i);
for (i=0; i<N; i++)
CuAssertIntEquals(tc, N-i-1, il_pop(x));
CuAssertIntEquals(tc, il_check_consistency(x), 0);
il_free(x);
}
void test_il_get_push(CuTest* tc) {
il* x = il_new(10);
il_push(x,10);
CuAssertIntEquals(tc, 10, il_get(x, 0));
il_push(x,20);
CuAssertIntEquals(tc, 10, il_get(x, 0));
CuAssertIntEquals(tc, 20, il_get(x, 1));
CuAssertIntEquals(tc, il_check_consistency(x), 0);
il_free(x);
}
void test_il_new(CuTest* tc) {
il* x = NULL;
x = il_new(10);
CuAssert(tc, "new", x != NULL);
CuAssertIntEquals(tc, il_size(x), 0);
CuAssertPtrEquals(tc, x->head, NULL);
CuAssertPtrEquals(tc, x->tail, NULL);
CuAssertIntEquals(tc, il_check_consistency(x), 0);
CuAssertIntEquals(tc, il_check_sorted_ascending(x, 0), 0);
il_free(x);
}
il* solvedclient_get_fields(int filenum, int firstfield, int lastfield,
int maxnfields) {
char* buf;
int bufsize;
il* list;
char* cptr;
int fld;
int nchars;
if (connect_to_server())
return NULL;
bufsize = 100 + 10 * (maxnfields ? maxnfields : (1 + lastfield - firstfield));
buf = malloc(bufsize);
nchars = sprintf(buf, "getall %i %i %i %i\n", filenum, firstfield,
lastfield, maxnfields);
if ((fwrite(buf, 1, nchars, fserver) != nchars) ||
fflush(fserver)) {
fprintf(stderr, "Failed to send command (%s) to solvedserver: %s\n", buf, strerror(errno));
return NULL;
}
// wait for response.
if (!fgets(buf, bufsize, fserver)) {
fprintf(stderr, "Couldn't read response: %s\n", strerror(errno));
fclose(fserver);
fserver = NULL;
free(buf);
return NULL;
}
if (sscanf(buf, "unsolved %i%n", &fld, &nchars) != 1) {
fprintf(stderr, "Couldn't parse response: %s\n", buf);
free(buf);
return NULL;
}
if (fld != filenum) {
fprintf(stderr, "Expected file number %i, not %i.\n", filenum, fld);
free(buf);
return NULL;
}
cptr = buf + nchars;
list = il_new(256);
while (*cptr && *cptr != '\n') {
if (sscanf(cptr, " %i%n", &fld, &nchars) != 1) {
fprintf(stderr, "Couldn't parse response: %s\n", buf);
il_free(list);
free(buf);
return NULL;
}
cptr += nchars;
il_append(list, fld);
}
free(buf);
return list;
}
void test_il_copy(CuTest* tc) {
int i, N=60, start=10, length=10;
int buf[N];
il* x = il_new(4);
memset(buf, 0, N);
for (i=0;i<N;i++)
il_push(x,i);
il_copy(x, start, length, buf);
for (i=0;i<length;i++)
CuAssertIntEquals(tc, start+i, buf[i]);
CuAssertIntEquals(tc, il_check_consistency(x), 0);
il_free(x);
}
void test_delete_2(CuTest* tc) {
il* bl = il_new(2);
il_push(bl, 42);
il_push(bl, 43);
il_push(bl, 47);
il_push(bl, 49);
il_remove(bl, 0);
il_remove(bl, 0);
il_remove(bl, 0);
il_remove(bl, 0);
CuAssertIntEquals(tc, il_size(bl), 0);
CuAssertPtrEquals(tc, bl->head, NULL);
CuAssertPtrEquals(tc, bl->tail, NULL);
CuAssertIntEquals(tc, il_check_consistency(bl), 0);
il_free(bl);
}
void test_set(CuTest* tc) {
il* bl;
bl = il_new(2);
CuAssertIntEquals(tc, il_size(bl), 0);
il_push(bl, 42);
il_push(bl, 43);
il_push(bl, 47);
il_push(bl, 49);
il_set(bl, 0, 0);
il_set(bl, 1, 1);
il_set(bl, 2, 2);
CuAssertIntEquals(tc, il_size(bl), 4);
CuAssertIntEquals(tc, 0, il_get(bl, 0));
CuAssertIntEquals(tc, 1, il_get(bl, 1));
CuAssertIntEquals(tc, 2, il_get(bl, 2));
CuAssertIntEquals(tc, il_check_consistency(bl), 0);
il_free(bl);
}
void test_il_remove_value(CuTest* tc) {
il* x = il_new(5);
il_push(x,10);
il_push(x,20);
il_push(x,30);
il_push(x,87);
il_push(x,87);
il_push(x,87);
il_push(x,87);
il_push(x,87);
il_push(x,92);
CuAssertIntEquals(tc, il_check_consistency(x), 0);
CuAssertIntEquals(tc, 8, il_remove_value(x, 92));
CuAssertIntEquals(tc, -1, il_remove_value(x, 37));
CuAssertIntEquals(tc, -1, il_remove_value(x, 0));
CuAssertIntEquals(tc, 2, il_remove_value(x, 30));
CuAssertIntEquals(tc, 0, il_remove_value(x, 10));
CuAssertIntEquals(tc, 0, il_remove_value(x, 20));
CuAssertIntEquals(tc, il_check_consistency(x), 0);
il_free(x);
}
void test_il_contains(CuTest* tc) {
il* x = il_new(4);
il_push(x,10);
il_push(x,20);
il_push(x,30);
il_push(x,30);
il_push(x,30);
il_push(x,41);
il_push(x,30);
il_push(x,81);
CuAssertIntEquals(tc, il_check_consistency(x), 0);
CuAssertIntEquals(tc, 1, il_contains(x, 10));
CuAssertIntEquals(tc, 1, il_contains(x, 20));
CuAssertIntEquals(tc, 1, il_contains(x, 30));
CuAssertIntEquals(tc, 1, il_contains(x, 81));
CuAssertIntEquals(tc, 1, il_contains(x, 41));
CuAssertIntEquals(tc, 0, il_contains(x, 42));
il_remove_value(x, 41);
CuAssertIntEquals(tc, il_check_consistency(x), 0);
CuAssertIntEquals(tc, 0, il_contains(x, 41));
il_free(x);
}
void test_delete_4(CuTest* tc) {
int i, j, N;
il* bl = il_new(20);
N = 100;
for (i=0; i<N; i++)
il_push(bl, i);
for (i=0; i<N; i++) {
int ind = rand() % il_size(bl);
il_remove(bl, ind);
for (j=1; j<il_size(bl); j++) {
CuAssert(tc, "mono", (il_get(bl, j) - il_get(bl, j-1)) > 0);
}
}
CuAssertIntEquals(tc, il_size(bl), 0);
CuAssertPtrEquals(tc, bl->head, NULL);
CuAssertPtrEquals(tc, bl->tail, NULL);
CuAssertIntEquals(tc, il_check_consistency(bl), 0);
il_free(bl);
}
// okay just make a bfs and then add in like an extra counter
// that counts number of things added to list and then short circuit
il* limited_bfs(graph *g, unsigned int start_key, unsigned int max_steps) {
// check for errors
if (start_key>=g->n_vertices) {
fprintf(stderr,"bfs: no such vertex (%u)\n",start_key);
exit(1);
}
il *prev_reached, *reached;
reached = NULL;
iq *q = iq_new();
int curr;
int list_elements = 0;
enqueue(q, start_key);
while (q->n > 0) {
curr = dequeue(q);
if (g->vs[curr]->done)
continue;
g->vs[curr]->done = 1;
prev_reached = reached;
reached = il_append(prev_reached,il_singleton(curr));
il_free(prev_reached);
list_elements++;
if (list_elements >= max_steps) {
iq_free(q);
return reached;
}
il *neighbors = g->es[curr];
while (neighbors != NULL) {
int n = neighbors->n;
enqueue(q,n);
neighbors = neighbors->next;
}
}
iq_free(q);
return reached;
}
void ilA_mesh_free(ilA_mesh *self)
{
if (self->position) {
il_free(aligned_16, self->position);
}
if (self->texcoord) {
il_free(aligned_16, self->texcoord);
}
if (self->normal) {
il_free(aligned_16, self->normal);
}
if (self->ambient) {
il_free(aligned_16, self->ambient);
}
if (self->diffuse) {
il_free(aligned_16, self->diffuse);
}
if (self->specular) {
il_free(aligned_16, self->specular);
}
free(self);
}
int hpquads(startree_t* starkd,
codefile_t* codes,
quadfile_t* quads,
int Nside,
double scale_min_arcmin,
double scale_max_arcmin,
int dimquads,
int passes,
int Nreuses,
int Nloosen,
int id,
anbool scanoccupied,
void* sort_data,
int (*sort_func)(const void*, const void*),
int sort_size,
char** args, int argc) {
hpquads_t myhpquads;
hpquads_t* me = &myhpquads;
int i;
int pass;
anbool circle = TRUE;
double radius2;
il* hptotry;
int Nhptotry = 0;
int nquads;
double hprad;
double quadscale;
int skhp, sknside;
qfits_header* qhdr;
qfits_header* chdr;
int N;
int dimcodes;
int quadsize;
int NHP;
memset(me, 0, sizeof(hpquads_t));
if (Nside > HP_MAX_INT_NSIDE) {
ERROR("Error: maximum healpix Nside = %i", HP_MAX_INT_NSIDE);
return -1;
}
if (Nreuses > 255) {
ERROR("Error, reuse (-r) must be less than 256");
return -1;
}
me->Nside = Nside;
me->dimquads = dimquads;
NHP = 12 * Nside * Nside;
dimcodes = dimquad2dimcode(dimquads);
quadsize = sizeof(unsigned int) * dimquads;
logmsg("Nside=%i. Nside^2=%i. Number of healpixes=%i. Healpix side length ~ %g arcmin.\n",
me->Nside, me->Nside*me->Nside, NHP, healpix_side_length_arcmin(me->Nside));
me->sort_data = sort_data;
me->sort_func = sort_func;
me->sort_size = sort_size;
tic();
me->starkd = starkd;
N = startree_N(me->starkd);
logmsg("Star tree contains %i objects.\n", N);
// get the "HEALPIX" header from the skdt...
skhp = qfits_header_getint(startree_header(me->starkd), "HEALPIX", -1);
if (skhp == -1) {
if (!qfits_header_getboolean(startree_header(me->starkd), "ALLSKY", FALSE)) {
logmsg("Warning: skdt does not contain \"HEALPIX\" header. Code and quad files will not contain this header either.\n");
}
}
// likewise "HPNSIDE"
sknside = qfits_header_getint(startree_header(me->starkd), "HPNSIDE", 1);
if (sknside && Nside % sknside) {
logerr("Error: Nside (-n) must be a multiple of the star kdtree healpixelisation: %i\n", sknside);
return -1;
}
if (!scanoccupied && (N*(skhp == -1 ? 1 : sknside*sknside*12) < NHP)) {
logmsg("\n\n");
logmsg("NOTE, your star kdtree is sparse (has only a fraction of the stars expected)\n");
logmsg(" so you probably will get much faster results by setting the \"-E\" command-line\n");
logmsg(" flag.\n");
logmsg("\n\n");
}
quads->dimquads = me->dimquads;
codes->dimcodes = dimcodes;
quads->healpix = skhp;
codes->healpix = skhp;
quads->hpnside = sknside;
codes->hpnside = sknside;
if (id) {
quads->indexid = id;
codes->indexid = id;
}
qhdr = quadfile_get_header(quads);
chdr = codefile_get_header(codes);
add_headers(qhdr, args, argc, startree_header(me->starkd), circle, passes);
add_headers(chdr, args, argc, startree_header(me->starkd), circle, passes);
if (quadfile_write_header(quads)) {
ERROR("Couldn't write headers to quad file");
return -1;
}
if (codefile_write_header(codes)) {
ERROR("Couldn't write headers to code file");
return -1;
}
quads->numstars = codes->numstars = N;
me->quad_dist2_upper = arcmin2distsq(scale_max_arcmin);
me->quad_dist2_lower = arcmin2distsq(scale_min_arcmin);
codes->index_scale_upper = quads->index_scale_upper = distsq2rad(me->quad_dist2_upper);
codes->index_scale_lower = quads->index_scale_lower = distsq2rad(me->quad_dist2_lower);
me->nuses = calloc(N, sizeof(unsigned char));
// hprad = sqrt(2) * (healpix side length / 2.)
hprad = arcmin2dist(healpix_side_length_arcmin(Nside)) * M_SQRT1_2;
quadscale = 0.5 * sqrt(me->quad_dist2_upper);
// 1.01 for a bit of safety. we'll look at a few extra stars.
radius2 = square(1.01 * (hprad + quadscale));
me->radius2 = radius2;
logmsg("Healpix radius %g arcsec, quad scale %g arcsec, total %g arcsec\n",
distsq2arcsec(hprad*hprad),
distsq2arcsec(quadscale*quadscale),
distsq2arcsec(radius2));
hptotry = il_new(1024);
if (scanoccupied) {
logmsg("Scanning %i input stars...\n", N);
for (i=0; i<N; i++) {
double xyz[3];
int j;
if (startree_get(me->starkd, i, xyz)) {
ERROR("Failed to get star %i", i);
return -1;
}
j = xyzarrtohealpix(xyz, Nside);
il_insert_unique_ascending(hptotry, j);
if (log_get_level() > LOG_VERB) {
double ra,dec;
if (startree_get_radec(me->starkd, i, &ra, &dec)) {
ERROR("Failed to get RA,Dec for star %i\n", i);
return -1;
}
logdebug("star %i: RA,Dec %g,%g; xyz %g,%g,%g; hp %i\n",
i, ra, dec, xyz[0], xyz[1], xyz[2], j);
}
}
logmsg("Will check %zu healpixes.\n", il_size(hptotry));
if (log_get_level() > LOG_VERB) {
logdebug("Checking healpixes: [ ");
for (i=0; i<il_size(hptotry); i++)
logdebug("%i ", il_get(hptotry, i));
logdebug("]\n");
}
} else {
if (skhp == -1) {
// Try all healpixes.
il_free(hptotry);
hptotry = NULL;
Nhptotry = NHP;
} else {
// The star kdtree may itself be healpixed
int starhp, starx, stary;
// In that case, the healpixes we are interested in form a rectangle
// within a big healpix. These are the coords (in [0, Nside)) of
// that rectangle.
int x0, x1, y0, y1;
int x, y;
healpix_decompose_xy(skhp, &starhp, &starx, &stary, sknside);
x0 = starx * (Nside / sknside);
x1 = (starx+1) * (Nside / sknside);
y0 = stary * (Nside / sknside);
y1 = (stary+1) * (Nside / sknside);
for (y=y0; y<y1; y++) {
for (x=x0; x<x1; x++) {
int j = healpix_compose_xy(starhp, x, y, Nside);
il_append(hptotry, j);
}
}
assert(il_size(hptotry) == (Nside/sknside) * (Nside/sknside));
}
}
if (hptotry)
Nhptotry = il_size(hptotry);
me->quadlist = bl_new(65536, quadsize);
if (Nloosen)
me->retryhps = il_new(1024);
for (pass=0; pass<passes; pass++) {
char key[64];
int nthispass;
logmsg("Pass %i of %i.\n", pass+1, passes);
logmsg("Trying %i healpixes.\n", Nhptotry);
nthispass = build_quads(me, Nhptotry, hptotry, Nreuses);
logmsg("Made %i quads (out of %i healpixes) this pass.\n", nthispass, Nhptotry);
logmsg("Made %i quads so far.\n", (me->bigquadlist ? bt_size(me->bigquadlist) : 0) + (int)bl_size(me->quadlist));
sprintf(key, "PASS%i", pass+1);
fits_header_mod_int(chdr, key, nthispass, "quads created in this pass");
fits_header_mod_int(qhdr, key, nthispass, "quads created in this pass");
logmsg("Merging quads...\n");
if (!me->bigquadlist)
me->bigquadlist = bt_new(quadsize, 256);
for (i=0; i<bl_size(me->quadlist); i++) {
void* q = bl_access(me->quadlist, i);
bt_insert2(me->bigquadlist, q, FALSE, compare_quads, &me->dimquads);
}
bl_remove_all(me->quadlist);
}
il_free(hptotry);
hptotry = NULL;
if (Nloosen) {
int R;
for (R=Nreuses+1; R<=Nloosen; R++) {
il* trylist;
int nthispass;
logmsg("Loosening reuse maximum to %i...\n", R);
logmsg("Trying %zu healpixes.\n", il_size(me->retryhps));
if (!il_size(me->retryhps))
break;
trylist = me->retryhps;
me->retryhps = il_new(1024);
nthispass = build_quads(me, il_size(trylist), trylist, R);
logmsg("Made %i quads (out of %zu healpixes) this pass.\n", nthispass, il_size(trylist));
il_free(trylist);
for (i=0; i<bl_size(me->quadlist); i++) {
void* q = bl_access(me->quadlist, i);
bt_insert2(me->bigquadlist, q, FALSE, compare_quads, &me->dimquads);
}
bl_remove_all(me->quadlist);
}
}
if (me->retryhps)
il_free(me->retryhps);
kdtree_free_query(me->res);
me->res = NULL;
me->inds = NULL;
me->stars = NULL;
free(me->nuses);
me->nuses = NULL;
logmsg("Writing quads...\n");
// add the quads from the big-quadlist
nquads = bt_size(me->bigquadlist);
for (i=0; i<nquads; i++) {
unsigned int* q = bt_access(me->bigquadlist, i);
quad_write(codes, quads, q, me->starkd, me->dimquads, dimcodes);
}
// add the quads that were made during the final round.
for (i=0; i<bl_size(me->quadlist); i++) {
unsigned int* q = bl_access(me->quadlist, i);
quad_write(codes, quads, q, me->starkd, me->dimquads, dimcodes);
}
// fix output file headers.
if (quadfile_fix_header(quads)) {
ERROR("Failed to fix quadfile headers");
return -1;
}
if (codefile_fix_header(codes)) {
ERROR("Failed to fix codefile headers");
return -1;
}
bl_free(me->quadlist);
bt_free(me->bigquadlist);
toc();
logmsg("Done.\n");
return 0;
}
int wcs_xy2rd(const char* wcsfn, int ext,
const char* xylsfn, const char* rdlsfn,
const char* xcol, const char* ycol,
int forcetan,
int forcewcslib,
il* fields) {
rdlist_t* rdls = NULL;
xylist_t* xyls = NULL;
anwcs_t* wcs = NULL;
int i;
int rtn = -1;
anbool alloced_fields = FALSE;
// read WCS.
if (forcewcslib) {
wcs = anwcs_open_wcslib(wcsfn, ext);
} else if (forcetan) {
wcs = anwcs_open_tan(wcsfn, ext);
} else {
wcs = anwcs_open(wcsfn, ext);
}
if (!wcs) {
ERROR("Failed to read WCS file \"%s\", extension %i", wcsfn, ext);
return -1;
}
// read XYLS.
xyls = xylist_open(xylsfn);
if (!xyls) {
ERROR("Failed to read an xylist from file %s", xylsfn);
goto bailout;
}
xylist_set_include_flux(xyls, FALSE);
xylist_set_include_background(xyls, FALSE);
if (xcol)
xylist_set_xname(xyls, xcol);
if (ycol)
xylist_set_yname(xyls, ycol);
// write RDLS.
rdls = rdlist_open_for_writing(rdlsfn);
if (!rdls) {
ERROR("Failed to open file %s to write RDLS.\n", rdlsfn);
goto bailout;
}
if (rdlist_write_primary_header(rdls)) {
ERROR("Failed to write header to RDLS file %s.\n", rdlsfn);
goto bailout;
}
if (!fields) {
alloced_fields = TRUE;
fields = il_new(16);
}
if (!il_size(fields)) {
// add all fields.
int NF = xylist_n_fields(xyls);
for (i=1; i<=NF; i++)
il_append(fields, i);
}
logverb("Processing %zu extensions...\n", il_size(fields));
for (i=0; i<il_size(fields); i++) {
int fieldind = il_get(fields, i);
starxy_t xy;
rd_t rd;
int j;
if (!xylist_read_field_num(xyls, fieldind, &xy)) {
ERROR("Failed to read xyls file %s, field %i", xylsfn, fieldind);
goto bailout;
}
if (rdlist_write_header(rdls)) {
ERROR("Failed to write rdls field header to %s", rdlsfn);
goto bailout;
}
rd_alloc_data(&rd, starxy_n(&xy));
for (j=0; j<starxy_n(&xy); j++) {
double x, y, ra, dec;
x = starxy_getx(&xy, j);
y = starxy_gety(&xy, j);
anwcs_pixelxy2radec(wcs, x, y, &ra, &dec);
rd_setra (&rd, j, ra);
rd_setdec(&rd, j, dec);
}
if (rdlist_write_field(rdls, &rd)) {
ERROR("Failed to write rdls field to %s", rdlsfn);
goto bailout;
}
rd_free_data(&rd);
starxy_free_data(&xy);
if (rdlist_fix_header(rdls)) {
ERROR("Failed to fix rdls field header for %s", rdlsfn);
goto bailout;
}
rdlist_next_field(rdls);
}
if (rdlist_fix_primary_header(rdls) ||
rdlist_close(rdls)) {
ERROR("Failed to fix header of RDLS file %s", rdlsfn);
goto bailout;
}
rdls = NULL;
if (xylist_close(xyls)) {
ERROR("Failed to close XYLS file %s", xylsfn);
goto bailout;
}
xyls = NULL;
rtn = 0;
bailout:
if (alloced_fields)
il_free(fields);
if (rdls)
rdlist_close(rdls);
if (xyls)
xylist_close(xyls);
if (wcs)
anwcs_free(wcs);
return rtn;
}
int plot_healpix_plot(const char* command,
cairo_t* cairo, plot_args_t* pargs, void* baton) {
plothealpix_t* args = (plothealpix_t*)baton;
double ra,dec,rad;
il* hps;
int i;
double hpstep;
int minx[12], maxx[12], miny[12], maxy[12];
plotstuff_builtin_apply(cairo, pargs);
if (plotstuff_get_radec_center_and_radius(pargs, &ra, &dec, &rad)) {
ERROR("Failed to get RA,Dec center and radius");
return -1;
}
hps = healpix_rangesearch_radec(ra, dec, rad, args->nside, NULL);
logmsg("Found %zu healpixes in range.\n", il_size(hps));
hpstep = args->nside * args->stepsize * plotstuff_pixel_scale(pargs) / 60.0 / healpix_side_length_arcmin(args->nside);
hpstep = MIN(1, hpstep);
logmsg("Taking steps of %g in healpix space\n", hpstep);
// For each of the 12 top-level healpixes, find the range of healpixes covered by this image.
for (i=0; i<12; i++) {
maxx[i] = maxy[i] = -1;
minx[i] = miny[i] = args->nside+1;
}
for (i=0; i<il_size(hps); i++) {
int hp = il_get(hps, i);
int hpx, hpy;
int bighp;
healpix_decompose_xy(hp, &bighp, &hpx, &hpy, args->nside);
logverb(" hp %i: bighp %i, x,y (%i,%i)\n", i, bighp, hpx, hpy);
minx[bighp] = MIN(minx[bighp], hpx);
maxx[bighp] = MAX(maxx[bighp], hpx);
miny[bighp] = MIN(miny[bighp], hpy);
maxy[bighp] = MAX(maxy[bighp], hpy);
}
il_free(hps);
for (i=0; i<12; i++) {
int hx,hy;
int hp;
double d, frac;
double x,y;
if (maxx[i] == -1)
continue;
logverb("Big healpix %i: x range [%i, %i], y range [%i, %i]\n",
i, minx[i], maxx[i], miny[i], maxy[i]);
for (hy = miny[i]; hy <= maxy[i]; hy++) {
logverb(" y=%i\n", hy);
for (d=minx[i]; d<=maxx[i]; d+=hpstep) {
hx = floor(d);
frac = d - hx;
hp = healpix_compose_xy(i, hx, hy, args->nside);
healpix_to_radecdeg(hp, args->nside, frac, 0.0, &ra, &dec);
if (!plotstuff_radec2xy(pargs, ra, dec, &x, &y))
continue;
if (d == minx[i])
cairo_move_to(pargs->cairo, x, y);
else
cairo_line_to(pargs->cairo, x, y);
}
cairo_stroke(pargs->cairo);
}
for (hx = minx[i]; hx <= maxx[i]; hx++) {
for (d=miny[i]; d<=maxy[i]; d+=hpstep) {
hy = floor(d);
frac = d - hy;
hp = healpix_compose_xy(i, hx, hy, args->nside);
healpix_to_radecdeg(hp, args->nside, 0.0, frac, &ra, &dec);
if (!plotstuff_radec2xy(pargs, ra, dec, &x, &y))
continue;
if (d == miny[i])
cairo_move_to(pargs->cairo, x, y);
else
cairo_line_to(pargs->cairo, x, y);
}
cairo_stroke(pargs->cairo);
}
}
return 0;
}
int main(int argc, char** args) {
int c;
char* wcsfn = NULL;
char* outfn = NULL;
char* infn = NULL;
sip_t sip;
double scale = 1.0;
anbool pngformat = TRUE;
char* hdpath = NULL;
anbool HD = FALSE;
cairos_t thecairos;
cairos_t* cairos = &thecairos;
cairo_surface_t* target = NULL;
cairo_t* cairot = NULL;
cairo_surface_t* surfbg = NULL;
cairo_t* cairobg = NULL;
cairo_surface_t* surfshapes = NULL;
cairo_t* cairoshapes = NULL;
cairo_surface_t* surfshapesmask = NULL;
cairo_t* cairoshapesmask = NULL;
cairo_surface_t* surffg = NULL;
cairo_t* cairo = NULL;
double lw = 2.0;
// circle linewidth.
double cw = 2.0;
double ngc_fraction = 0.02;
// NGC linewidth
double nw = 2.0;
// leave a gap short of connecting the points.
double endgap = 5.0;
// circle radius.
double crad = endgap;
double fontsize = 14.0;
double label_offset = 15.0;
int W = 0, H = 0;
unsigned char* img = NULL;
anbool NGC = FALSE, constell = FALSE;
anbool bright = FALSE;
anbool common_only = FALSE;
anbool print_common_only = FALSE;
int Nbright = 0;
double ra, dec, px, py;
int i, N;
anbool justlist = FALSE;
anbool only_messier = FALSE;
anbool grid = FALSE;
double gridspacing = 0.0;
double gridcolor[3] = { 0.2, 0.2, 0.2 };
int loglvl = LOG_MSG;
char halign = 'L';
char valign = 'C';
sl* json = NULL;
anbool whitetext = FALSE;
while ((c = getopt(argc, args, OPTIONS)) != -1) {
switch (c) {
case 'V':
valign = optarg[0];
break;
case 'O':
halign = optarg[0];
break;
case 'F':
ngc_fraction = atof(optarg);
break;
case 'h':
print_help(args[0]);
exit(0);
case 'J':
json = sl_new(4);
break;
case 'G':
gridspacing = atof(optarg);
break;
case 'g':
{
char *tail = NULL;
gridcolor[0] = strtod(optarg,&tail);
if (*tail) { tail++; gridcolor[1] = strtod(tail,&tail); }
if (*tail) { tail++; gridcolor[2] = strtod(tail,&tail); }
}
break;
case 'D':
HD = TRUE;
break;
case 'd':
hdpath = optarg;
break;
case 'M':
only_messier = TRUE;
break;
case 'n':
nw = atof(optarg);
break;
case 'f':
fontsize = atof(optarg);
break;
case 'L':
justlist = TRUE;
outfn = NULL;
break;
case 'x':
whitetext = TRUE;
break;
case 'v':
loglvl++;
break;
break;
case 'j':
print_common_only = TRUE;
break;
case 'c':
common_only = TRUE;
break;
case 'b':
Nbright = atoi(optarg);
break;
case 'B':
bright = TRUE;
break;
case 'N':
NGC = TRUE;
break;
case 'C':
constell = TRUE;
break;
case 'p':
pngformat = FALSE;
break;
case 's':
scale = atof(optarg);
break;
case 'o':
outfn = optarg;
break;
case 'i':
infn = optarg;
break;
case 'w':
wcsfn = optarg;
break;
case 'W':
W = atoi(optarg);
break;
case 'H':
H = atoi(optarg);
break;
}
}
log_init(loglvl);
log_to(stderr);
fits_use_error_system();
if (optind != argc) {
print_help(args[0]);
exit(-1);
}
if (!(outfn || justlist) || !wcsfn) {
logerr("Need (-o or -L) and -w args.\n");
print_help(args[0]);
exit(-1);
}
// read WCS.
logverb("Trying to parse SIP/TAN header from %s...\n", wcsfn);
if (!file_exists(wcsfn)) {
ERROR("No such file: \"%s\"", wcsfn);
exit(-1);
}
if (sip_read_header_file(wcsfn, &sip)) {
logverb("Got SIP header.\n");
} else {
ERROR("Failed to parse SIP/TAN header from %s", wcsfn);
exit(-1);
}
if (!(NGC || constell || bright || HD || grid)) {
logerr("Neither constellations, bright stars, HD nor NGC/IC overlays selected!\n");
print_help(args[0]);
exit(-1);
}
if (gridspacing > 0.0)
grid = TRUE;
// adjust for scaling...
lw /= scale;
cw /= scale;
nw /= scale;
crad /= scale;
endgap /= scale;
fontsize /= scale;
label_offset /= scale;
if (!W || !H) {
W = sip.wcstan.imagew;
H = sip.wcstan.imageh;
}
if (!(infn || (W && H))) {
logerr("Image width/height unspecified, and no input image given.\n");
exit(-1);
}
if (infn) {
cairoutils_fake_ppm_init();
img = cairoutils_read_ppm(infn, &W, &H);
if (!img) {
ERROR("Failed to read input image %s", infn);
exit(-1);
}
cairoutils_rgba_to_argb32(img, W, H);
} else if (!justlist) {
// Allocate a black image.
img = calloc(4 * W * H, 1);
if (!img) {
SYSERROR("Failed to allocate a blank image on which to plot!");
exit(-1);
}
}
if (HD && !hdpath) {
logerr("If you specify -D (plot Henry Draper objs), you also have to give -d (path to Henry Draper catalog)\n");
exit(-1);
}
if (!justlist) {
/*
Cairo layers:
-background: surfbg / cairobg
--> gets drawn first, in black, masked by surfshapesmask
-shapes: surfshapes / cairoshapes
--> gets drawn second, masked by surfshapesmask
-foreground/text: surffg / cairo
--> gets drawn last.
*/
surffg = cairo_image_surface_create(CAIRO_FORMAT_ARGB32, W, H);
cairo = cairo_create(surffg);
cairo_set_line_join(cairo, CAIRO_LINE_JOIN_BEVEL);
cairo_set_antialias(cairo, CAIRO_ANTIALIAS_GRAY);
cairo_set_source_rgba(cairo, 1.0, 1.0, 1.0, 1.0);
cairo_scale(cairo, scale, scale);
//cairo_select_font_face(cairo, "helvetica", CAIRO_FONT_SLANT_NORMAL, CAIRO_FONT_WEIGHT_BOLD);
cairo_select_font_face(cairo, "DejaVu Sans Mono Book", CAIRO_FONT_SLANT_NORMAL, CAIRO_FONT_WEIGHT_BOLD);
cairo_set_font_size(cairo, fontsize);
surfshapes = cairo_image_surface_create(CAIRO_FORMAT_ARGB32, W, H);
cairoshapes = cairo_create(surfshapes);
cairo_set_line_join(cairoshapes, CAIRO_LINE_JOIN_BEVEL);
cairo_set_antialias(cairoshapes, CAIRO_ANTIALIAS_GRAY);
cairo_set_source_rgba(cairoshapes, 1.0, 1.0, 1.0, 1.0);
cairo_scale(cairoshapes, scale, scale);
cairo_select_font_face(cairoshapes, "DejaVu Sans Mono Book", CAIRO_FONT_SLANT_NORMAL, CAIRO_FONT_WEIGHT_BOLD);
cairo_set_font_size(cairoshapes, fontsize);
surfshapesmask = cairo_image_surface_create(CAIRO_FORMAT_A8, W, H);
cairoshapesmask = cairo_create(surfshapesmask);
cairo_set_line_join(cairoshapesmask, CAIRO_LINE_JOIN_BEVEL);
cairo_set_antialias(cairoshapesmask, CAIRO_ANTIALIAS_GRAY);
cairo_set_source_rgba(cairoshapesmask, 1.0, 1.0, 1.0, 1.0);
cairo_scale(cairoshapesmask, scale, scale);
cairo_select_font_face(cairoshapesmask, "DejaVu Sans Mono Book", CAIRO_FONT_SLANT_NORMAL, CAIRO_FONT_WEIGHT_BOLD);
cairo_set_font_size(cairoshapesmask, fontsize);
cairo_paint(cairoshapesmask);
cairo_stroke(cairoshapesmask);
surfbg = cairo_image_surface_create(CAIRO_FORMAT_A8, W, H);
cairobg = cairo_create(surfbg);
cairo_set_line_join(cairobg, CAIRO_LINE_JOIN_BEVEL);
cairo_set_antialias(cairobg, CAIRO_ANTIALIAS_GRAY);
cairo_set_source_rgba(cairobg, 0, 0, 0, 1);
cairo_scale(cairobg, scale, scale);
cairo_select_font_face(cairobg, "DejaVu Sans Mono Book", CAIRO_FONT_SLANT_NORMAL, CAIRO_FONT_WEIGHT_BOLD);
cairo_set_font_size(cairobg, fontsize);
cairos->bg = cairobg;
cairos->fg = cairo;
cairos->shapes = cairoshapes;
cairos->shapesmask = cairoshapesmask;
cairos->imgW = (float)W/scale;
cairos->imgH = (float)H/scale;
// }
if (grid) {
double ramin, ramax, decmin, decmax;
double ra, dec;
double rastep = gridspacing / 60.0;
double decstep = gridspacing / 60.0;
// how many line segments
int N = 10;
double px, py;
int i;
cairo_set_source_rgba(cairo, gridcolor[0], gridcolor[1], gridcolor[2], 1.0);
sip_get_radec_bounds(&sip, 100, &ramin, &ramax, &decmin, &decmax);
logverb("Plotting grid lines from RA=%g to %g in steps of %g; Dec=%g to %g in steps of %g\n",
ramin, ramax, rastep, decmin, decmax, decstep);
for (dec = decstep * floor(decmin / decstep); dec<=decmax; dec+=decstep) {
logverb(" dec=%g\n", dec);
for (i=0; i<=N; i++) {
ra = ramin + ((double)i / (double)N) * (ramax - ramin);
if (!sip_radec2pixelxy(&sip, ra, dec, &px, &py))
continue;
// first time, move_to; else line_to
((ra == ramin) ? cairo_move_to : cairo_line_to)(cairo, px, py);
}
cairo_stroke(cairo);
}
for (ra = rastep * floor(ramin / rastep); ra <= ramax; ra += rastep) {
//for (dec=decmin; dec<=decmax; dec += (decmax - decmin)/(double)N) {
logverb(" ra=%g\n", ra);
for (i=0; i<=N; i++) {
dec = decmin + ((double)i / (double)N) * (decmax - decmin);
if (!sip_radec2pixelxy(&sip, ra, dec, &px, &py))
continue;
// first time, move_to; else line_to
((dec == decmin) ? cairo_move_to : cairo_line_to)(cairo, px, py);
}
cairo_stroke(cairo);
}
cairo_set_source_rgba(cairo, 1.0, 1.0, 1.0, 1.0);
}
}
if (constell) {
N = constellations_n();
logverb("Checking %i constellations.\n", N);
for (c=0; c<N; c++) {
const char* shortname = NULL;
const char* longname;
il* lines;
il* uniqstars;
il* inboundstars;
float r,g,b;
int Ninbounds;
int Nunique;
cairo_text_extents_t textents;
double cmass[3];
uniqstars = constellations_get_unique_stars(c);
inboundstars = il_new(16);
Nunique = il_size(uniqstars);
debug("%s: %zu unique stars.\n", shortname, il_size(uniqstars));
// Count the number of unique stars belonging to this contellation
// that are within the image bounds
Ninbounds = 0;
for (i=0; i<il_size(uniqstars); i++) {
int star;
star = il_get(uniqstars, i);
constellations_get_star_radec(star, &ra, &dec);
debug("star %i: ra,dec (%g,%g)\n", il_get(uniqstars, i), ra, dec);
if (!sip_radec2pixelxy(&sip, ra, dec, &px, &py))
continue;
if (px < 0 || py < 0 || px*scale > W || py*scale > H)
continue;
Ninbounds++;
il_append(inboundstars, star);
}
il_free(uniqstars);
debug("%i are in-bounds.\n", Ninbounds);
// Only draw this constellation if at least 2 of its stars
// are within the image bounds.
if (Ninbounds < 2) {
il_free(inboundstars);
continue;
}
// Set the color based on the location of the first in-bounds star.
// This is a hack -- we have two different constellation
// definitions with different numbering schemes!
if (!justlist && (il_size(inboundstars) > 0)) {
// This is helpful for videos: ensuring that the same
// color is chosen for a constellation in each frame.
int star = il_get(inboundstars, 0);
constellations_get_star_radec(star, &ra, &dec);
if (whitetext) {
r = g = b = 1;
} else {
color_for_radec(ra, dec, &r, &g, &b);
}
cairo_set_source_rgba(cairoshapes, r,g,b,0.8);
cairo_set_line_width(cairoshapes, cw);
cairo_set_source_rgba(cairo, r,g,b,0.8);
cairo_set_line_width(cairo, cw);
}
// Draw circles around each star.
// Find center of mass (of the in-bounds stars)
cmass[0] = cmass[1] = cmass[2] = 0.0;
for (i=0; i<il_size(inboundstars); i++) {
double xyz[3];
int star = il_get(inboundstars, i);
constellations_get_star_radec(star, &ra, &dec);
if (!sip_radec2pixelxy(&sip, ra, dec, &px, &py))
continue;
if (px < 0 || py < 0 || px*scale > W || py*scale > H)
continue;
if (!justlist) {
cairo_arc(cairobg, px, py, crad+1.0, 0.0, 2.0*M_PI);
cairo_stroke(cairobg);
cairo_arc(cairoshapes, px, py, crad, 0.0, 2.0*M_PI);
cairo_stroke(cairoshapes);
}
radecdeg2xyzarr(ra, dec, xyz);
cmass[0] += xyz[0];
cmass[1] += xyz[1];
cmass[2] += xyz[2];
}
cmass[0] /= il_size(inboundstars);
cmass[1] /= il_size(inboundstars);
cmass[2] /= il_size(inboundstars);
xyzarr2radecdeg(cmass, &ra, &dec);
il_free(inboundstars);
if (!sip_radec2pixelxy(&sip, ra, dec, &px, &py))
continue;
shortname = constellations_get_shortname(c);
longname = constellations_get_longname(c);
assert(shortname && longname);
logverb("%s at (%g, %g)\n", longname, px, py);
if (Ninbounds == Nunique) {
printf("The constellation %s (%s)\n", longname, shortname);
} else {
printf("Part of the constellation %s (%s)\n", longname, shortname);
}
if (justlist)
continue;
// If the label will be off-screen, move it back on.
cairo_text_extents(cairo, shortname, &textents);
if (px < 0)
px = 0;
if (py < textents.height)
py = textents.height;
if ((px + textents.width)*scale > W)
px = W/scale - textents.width;
if ((py+textents.height)*scale > H)
py = H/scale - textents.height;
logverb("%s at (%g, %g)\n", shortname, px, py);
add_text(cairos, longname, px, py, halign, valign);
// Draw the lines.
cairo_set_line_width(cairo, lw);
lines = constellations_get_lines(c);
for (i=0; i<il_size(lines)/2; i++) {
int star1, star2;
double ra1, dec1, ra2, dec2;
double px1, px2, py1, py2;
double dx, dy;
double dist;
double gapfrac;
star1 = il_get(lines, i*2+0);
star2 = il_get(lines, i*2+1);
constellations_get_star_radec(star1, &ra1, &dec1);
constellations_get_star_radec(star2, &ra2, &dec2);
if (!sip_radec2pixelxy(&sip, ra1, dec1, &px1, &py1) ||
!sip_radec2pixelxy(&sip, ra2, dec2, &px2, &py2))
continue;
dx = px2 - px1;
dy = py2 - py1;
dist = hypot(dx, dy);
gapfrac = endgap / dist;
cairo_move_to(cairoshapes, px1 + dx*gapfrac, py1 + dy*gapfrac);
cairo_line_to(cairoshapes, px1 + dx*(1.0-gapfrac), py1 + dy*(1.0-gapfrac));
cairo_stroke(cairoshapes);
}
il_free(lines);
}
logverb("done constellations.\n");
}
if (bright) {
double dy = 0;
cairo_font_extents_t extents;
pl* brightstars = pl_new(16);
if (!justlist) {
cairo_set_source_rgba(cairoshapes, 0.75, 0.75, 0.75, 0.8);
cairo_font_extents(cairo, &extents);
dy = extents.ascent * 0.5;
cairo_set_line_width(cairoshapes, cw);
}
N = bright_stars_n();
logverb("Checking %i bright stars.\n", N);
for (i=0; i<N; i++) {
const brightstar_t* bs = bright_stars_get(i);
if (!sip_radec2pixelxy(&sip, bs->ra, bs->dec, &px, &py))
continue;
if (px < 0 || py < 0 || px*scale > W || py*scale > H)
continue;
if (!(bs->name && strlen(bs->name)))
continue;
if (common_only && !(bs->common_name && strlen(bs->common_name)))
continue;
if (strcmp(bs->common_name, "Maia") == 0)
continue;
pl_append(brightstars, bs);
}
// keep only the Nbright brightest?
if (Nbright && (pl_size(brightstars) > Nbright)) {
pl_sort(brightstars, sort_by_mag);
pl_remove_index_range(brightstars, Nbright, pl_size(brightstars)-Nbright);
}
for (i=0; i<pl_size(brightstars); i++) {
char* text;
const brightstar_t* bs = pl_get(brightstars, i);
if (!sip_radec2pixelxy(&sip, bs->ra, bs->dec, &px, &py))
continue;
if (bs->common_name && strlen(bs->common_name))
if (print_common_only || common_only)
text = strdup(bs->common_name);
else
asprintf_safe(&text, "%s (%s)", bs->common_name, bs->name);
else
text = strdup(bs->name);
logverb("%s at (%g, %g)\n", text, px, py);
if (json) {
sl* names = sl_new(4);
char* namearr;
if (bs->common_name && strlen(bs->common_name))
sl_append(names, bs->common_name);
if (bs->name)
sl_append(names, bs->name);
namearr = sl_join(names, "\", \"");
sl_appendf(json,
"{ \"type\" : \"star\", "
" \"pixelx\": %g, "
" \"pixely\": %g, "
" \"name\" : \"%s\", "
" \"names\" : [ \"%s\" ] } "
, px, py,
(bs->common_name && strlen(bs->common_name)) ? bs->common_name : bs->name,
namearr);
free(namearr);
sl_free2(names);
}
if (bs->common_name && strlen(bs->common_name))
printf("The star %s (%s)\n", bs->common_name, bs->name);
else
printf("The star %s\n", bs->name);
if (!justlist) {
float r,g,b;
// set color based on RA,Dec to match constellations above.
if (whitetext) {
r = g = b = 1;
} else {
color_for_radec(bs->ra, bs->dec, &r, &g, &b);
}
cairo_set_source_rgba(cairoshapes, r,g,b,0.8);
cairo_set_source_rgba(cairo, r,g,b, 0.8);
}
if (!justlist)
add_text(cairos, text, px + label_offset, py + dy,
halign, valign);
free(text);
if (!justlist) {
// plot a black circle behind the light circle...
cairo_arc(cairobg, px, py, crad+1.0, 0.0, 2.0*M_PI);
cairo_stroke(cairobg);
cairo_arc(cairoshapes, px, py, crad, 0.0, 2.0*M_PI);
cairo_stroke(cairoshapes);
}
}
pl_free(brightstars);
}
if (NGC) {
double imscale;
double imsize;
double dy = 0;
cairo_font_extents_t extents;
if (!justlist) {
cairo_set_source_rgb(cairoshapes, 1.0, 1.0, 1.0);
cairo_set_source_rgb(cairo, 1.0, 1.0, 1.0);
cairo_set_line_width(cairo, nw);
cairo_font_extents(cairo, &extents);
dy = extents.ascent * 0.5;
}
// arcsec/pixel
imscale = sip_pixel_scale(&sip);
// arcmin
imsize = imscale * (imin(W, H) / scale) / 60.0;
N = ngc_num_entries();
logverb("Checking %i NGC/IC objects.\n", N);
for (i=0; i<N; i++) {
ngc_entry* ngc = ngc_get_entry(i);
sl* str;
sl* names;
double pixsize;
float ara, adec;
char* text;
if (!ngc)
break;
if (ngc->size < imsize * ngc_fraction)
continue;
if (ngcic_accurate_get_radec(ngc->is_ngc, ngc->id, &ara, &adec) == 0) {
ngc->ra = ara;
ngc->dec = adec;
}
if (!sip_radec2pixelxy(&sip, ngc->ra, ngc->dec, &px, &py))
continue;
if (px < 0 || py < 0 || px*scale > W || py*scale > H)
continue;
str = sl_new(4);
//sl_appendf(str, "%s %i", (ngc->is_ngc ? "NGC" : "IC"), ngc->id);
names = ngc_get_names(ngc, NULL);
if (names) {
int n;
for (n=0; n<sl_size(names); n++) {
if (only_messier && strncmp(sl_get(names, n), "M ", 2))
continue;
sl_append(str, sl_get(names, n));
}
}
sl_free2(names);
text = sl_implode(str, " / ");
printf("%s\n", text);
pixsize = ngc->size * 60.0 / imscale;
if (!justlist) {
// black circle behind the white one...
cairo_arc(cairobg, px, py, pixsize/2.0+1.0, 0.0, 2.0*M_PI);
cairo_stroke(cairobg);
cairo_move_to(cairoshapes, px + pixsize/2.0, py);
cairo_arc(cairoshapes, px, py, pixsize/2.0, 0.0, 2.0*M_PI);
debug("size: %f arcsec, pixsize: %f pixels\n", ngc->size, pixsize);
cairo_stroke(cairoshapes);
add_text(cairos, text, px + label_offset, py + dy,
halign, valign);
}
if (json) {
char* namelist = sl_implode(str, "\", \"");
sl_appendf(json,
"{ \"type\" : \"ngc\", "
" \"names\" : [ \"%s\" ], "
" \"pixelx\" : %g, "
" \"pixely\" : %g, "
" \"radius\" : %g }"
, namelist, px, py, pixsize/2.0);
free(namelist);
}
free(text);
sl_free2(str);
}
}
if (HD) {
double rac, decc, ra2, dec2;
double arcsec;
hd_catalog_t* hdcat;
bl* hdlist;
int i;
if (!justlist)
cairo_set_source_rgb(cairo, 1.0, 1.0, 1.0);
logverb("Reading HD catalog: %s\n", hdpath);
hdcat = henry_draper_open(hdpath);
if (!hdcat) {
ERROR("Failed to open HD catalog");
exit(-1);
}
logverb("Got %i HD stars\n", henry_draper_n(hdcat));
sip_pixelxy2radec(&sip, W/(2.0*scale), H/(2.0*scale), &rac, &decc);
sip_pixelxy2radec(&sip, 0.0, 0.0, &ra2, &dec2);
arcsec = arcsec_between_radecdeg(rac, decc, ra2, dec2);
// Fudge
arcsec *= 1.1;
hdlist = henry_draper_get(hdcat, rac, decc, arcsec);
logverb("Found %zu HD stars within range (%g arcsec of RA,Dec %g,%g)\n", bl_size(hdlist), arcsec, rac, decc);
for (i=0; i<bl_size(hdlist); i++) {
double px, py;
char* txt;
hd_entry_t* hd = bl_access(hdlist, i);
if (!sip_radec2pixelxy(&sip, hd->ra, hd->dec, &px, &py)) {
continue;
}
if (px < 0 || py < 0 || px*scale > W || py*scale > H) {
logverb(" HD %i at RA,Dec (%g, %g) -> pixel (%.1f, %.1f) is out of bounds\n",
hd->hd, hd->ra, hd->dec, px, py);
continue;
}
asprintf_safe(&txt, "HD %i", hd->hd);
if (!justlist) {
cairo_text_extents_t textents;
cairo_text_extents(cairo, txt, &textents);
cairo_arc(cairobg, px, py, crad+1.0, 0.0, 2.0*M_PI);
cairo_stroke(cairobg);
cairo_arc(cairoshapes, px, py, crad, 0.0, 2.0*M_PI);
cairo_stroke(cairoshapes);
px -= (textents.width * 0.5);
py -= (crad + 4.0);
add_text(cairos, txt, px, py, halign, valign);
}
if (json)
sl_appendf(json,
"{ \"type\" : \"hd\","
" \"pixelx\": %g, "
" \"pixely\": %g, "
" \"name\" : \"HD %i\" }"
, px, py, hd->hd);
printf("%s\n", txt);
free(txt);
}
bl_free(hdlist);
henry_draper_close(hdcat);
}
if (json) {
FILE* fout = stderr;
char* annstr = sl_implode(json, ",\n");
fprintf(fout, "{ \n");
fprintf(fout, " \"status\": \"solved\",\n");
fprintf(fout, " \"git-revision\": %s,\n", AN_GIT_REVISION);
fprintf(fout, " \"git-date\": \"%s\",\n", AN_GIT_DATE);
fprintf(fout, " \"annotations\": [\n%s\n]\n", annstr);
fprintf(fout, "}\n");
free(annstr);
}
sl_free2(json);
json = NULL;
if (justlist)
return 0;
target = cairo_image_surface_create_for_data(img, CAIRO_FORMAT_ARGB32, W, H, W*4);
cairot = cairo_create(target);
cairo_set_source_rgba(cairot, 0, 0, 0, 1);
// Here's where you set the background surface's properties...
cairo_set_source_surface(cairot, surfbg, 0, 0);
cairo_mask_surface(cairot, surfshapesmask, 0, 0);
cairo_stroke(cairot);
// Add on the shapes.
cairo_set_source_surface(cairot, surfshapes, 0, 0);
//cairo_mask_surface(cairot, surfshapes, 0, 0);
cairo_mask_surface(cairot, surfshapesmask, 0, 0);
cairo_stroke(cairot);
// Add on the foreground.
cairo_set_source_surface(cairot, surffg, 0, 0);
cairo_mask_surface(cairot, surffg, 0, 0);
cairo_stroke(cairot);
// Convert image for output...
cairoutils_argb32_to_rgba(img, W, H);
if (pngformat) {
if (cairoutils_write_png(outfn, img, W, H)) {
ERROR("Failed to write PNG");
exit(-1);
}
} else {
if (cairoutils_write_ppm(outfn, img, W, H)) {
ERROR("Failed to write PPM");
exit(-1);
}
}
cairo_surface_destroy(target);
cairo_surface_destroy(surfshapesmask);
cairo_surface_destroy(surffg);
cairo_surface_destroy(surfbg);
cairo_surface_destroy(surfshapes);
cairo_destroy(cairo);
cairo_destroy(cairot);
cairo_destroy(cairobg);
cairo_destroy(cairoshapes);
cairo_destroy(cairoshapesmask);
free(img);
return 0;
}
int main(int argc, char** args) {
char* filename = NULL;
int npoints;
int i, j;
int* healpixes;
int argchar;
char* progname = args[0];
il** lists;
anbool quiet = FALSE;
rdlist* rdls;
int Nside = 1;
int N;
while ((argchar = getopt (argc, args, OPTIONS)) != -1)
switch (argchar) {
case 'N':
Nside = atoi(optarg);
break;
case 'f':
filename = optarg;
break;
case 'h':
printHelp(progname);
exit(0);
case 'q':
quiet = TRUE;
break;
case '?':
fprintf(stderr, "Unknown option `-%c'.\n", optopt);
default:
exit(-1);
}
if (!filename) {
printHelp(progname);
exit(-1);
}
fprintf(stderr, "Opening RDLS file %s...\n", filename);
rdls = rdlist_open(filename);
if (!rdls) {
fprintf(stderr, "Failed to open RDLS file.\n");
exit(-1);
}
N = 12 * Nside * Nside;
healpixes = malloc(N * sizeof(int));
lists = calloc(N, sizeof(il*));
/*
for (i=0; i<N; i++) {
lists[i] = il_new(256);
}
*/
for (j=1; j<=rdls_n_fields(rdls); j++) {
rd* points;
points = rdlist_get_field(rdls, j);
if (!points) {
fprintf(stderr, "error reading field %i\n", j);
break;
}
memset(healpixes, 0, N * sizeof(int));
npoints = rd_size(points);
for (i=0; i<npoints; i++) {
double ra, dec;
int hp;
ra = deg2rad(rd_refra (points, i));
dec = deg2rad(rd_refdec(points, i));
if (Nside > 1)
hp = radectohealpix_nside(ra, dec, Nside);
else
hp = radectohealpix(ra, dec);
if ((hp < 0) || (hp >= N)) {
printf("hp=%i\n", hp);
continue;
}
healpixes[hp] = 1;
}
if (!quiet) {
printf("Field %i: healpixes ", j);
for (i=0; i<N; i++) {
if (healpixes[i])
printf("%i ", i);
}
printf("\n");
fflush(stdout);
}
for (i=0; i<N; i++)
if (healpixes[i]) {
if (!lists[i])
lists[i] = il_new(256);
il_append(lists[i], j);
}
free_rd(points);
}
for (i=0; i<N; i++) {
int N;
if (!lists[i])
continue;
printf("HP %i: ", i);
N = il_size(lists[i]);
for (j=0; j<N; j++)
printf("%i ", il_get(lists[i], j));
il_free(lists[i]);
printf("\n");
}
free(lists);
free(healpixes);
rdlist_close(rdls);
return 0;
}
int handle_request(FILE* fid) {
char buf[256];
char fn[256];
int set;
int get;
int getall;
int filenum;
int fieldnum;
int lastfieldnum;
int maxfields;
char* nextword;
//printf("Fileno %i:\n", fileno(fid));
if (!fgets(buf, 256, fid)) {
fprintf(stderr, "Error: failed to read a line of input.\n");
fflush(stderr);
fclose(fid);
return -1;
}
//printf("Got request %s\n", buf);
get = set = getall = 0;
if (is_word(buf, "get ", &nextword)) {
get = 1;
} else if (is_word(buf, "set ", &nextword)) {
set = 1;
} else if (is_word(buf, "getall ", &nextword)) {
getall = 1;
}
if (!(get || set || getall)) {
fprintf(stderr, "Error: malformed command.\n");
fclose(fid);
return -1;
}
if (get || set) {
if (sscanf(nextword, "%i %i", &filenum, &fieldnum) != 2) {
fprintf(stderr, "Error: malformed request: %s\n", buf);
fflush(stderr);
fclose(fid);
return -1;
}
} else if (getall) {
if (sscanf(nextword, "%i %i %i %i", &filenum, &fieldnum, &lastfieldnum, &maxfields) != 4) {
fprintf(stderr, "Error: malformed request: %s\n", buf);
fflush(stderr);
fclose(fid);
return -1;
}
if (lastfieldnum < fieldnum) {
fprintf(stderr, "Error: invalid \"getall\" request: lastfieldnum must be >= firstfieldnum.\n");
fflush(stderr);
fclose(fid);
return -1;
}
}
sprintf(fn, solvedfnpattern, filenum);
if (get) {
int val;
printf("Get %s [%i].\n", fn, fieldnum);
fflush(stdout);
val = solvedfile_get(fn, fieldnum);
if (val == -1) {
fclose(fid);
return -1;
} else {
fprintf(fid, "%s %i %i\n", (val ? "solved" : "unsolved"),
filenum, fieldnum);
fflush(fid);
}
return 0;
} else if (set) {
printf("Set %s [%i].\n", fn, fieldnum);
fflush(stdout);
if (solvedfile_set(fn, fieldnum)) {
fclose(fid);
return -1;
}
fprintf(fid, "ok\n");
fflush(fid);
return 0;
} else if (getall) {
int i;
il* list;
printf("Getall %s [%i : %i], max %i.\n", fn, fieldnum, lastfieldnum, maxfields);
fflush(stdout);
fprintf(fid, "unsolved %i", filenum);
list = solvedfile_getall(fn, fieldnum, lastfieldnum, maxfields);
if (list) {
for (i=0; i<il_size(list); i++)
fprintf(fid, " %i", il_get(list, i));
il_free(list);
}
fprintf(fid, "\n");
fflush(fid);
return 0;
}
return -1;
}
int main(int argc, char *argv[]) {
int argchar;
char* progname = argv[0];
sl* infns = sl_new(16);
char* outfnpat = NULL;
char* racol = "RA";
char* deccol = "DEC";
char* tempdir = "/tmp";
anbool gzip = FALSE;
sl* cols = sl_new(16);
int loglvl = LOG_MSG;
int nside = 1;
double margin = 0.0;
int NHP;
double md;
char* backref = NULL;
fitstable_t* intable;
fitstable_t** outtables;
char** myargs;
int nmyargs;
int i;
while ((argchar = getopt (argc, argv, OPTIONS)) != -1)
switch (argchar) {
case 'b':
backref = optarg;
break;
case 't':
tempdir = optarg;
break;
case 'c':
sl_append(cols, optarg);
break;
case 'g':
gzip = TRUE;
break;
case 'o':
outfnpat = optarg;
break;
case 'r':
racol = optarg;
break;
case 'd':
deccol = optarg;
break;
case 'n':
nside = atoi(optarg);
break;
case 'm':
margin = atof(optarg);
break;
case 'v':
loglvl++;
break;
case '?':
fprintf(stderr, "Unknown option `-%c'.\n", optopt);
case 'h':
printHelp(progname);
return 0;
default:
return -1;
}
if (sl_size(cols) == 0) {
sl_free2(cols);
cols = NULL;
}
nmyargs = argc - optind;
myargs = argv + optind;
for (i=0; i<nmyargs; i++)
sl_append(infns, myargs[i]);
if (!sl_size(infns)) {
printHelp(progname);
printf("Need input filenames!\n");
exit(-1);
}
log_init(loglvl);
fits_use_error_system();
NHP = 12 * nside * nside;
logmsg("%i output healpixes\n", NHP);
outtables = calloc(NHP, sizeof(fitstable_t*));
assert(outtables);
md = deg2dist(margin);
/**
About the mincaps/maxcaps:
These have a center and radius-squared, describing the region
inside a small circle on the sphere.
The "mincaps" describe the regions that are definitely owned by a
single healpix -- ie, more than MARGIN distance from any edge.
That is, the mincap is the small circle centered at (0.5, 0.5) in
the healpix and with radius = the distance to the closest healpix
boundary, MINUS the margin distance.
Below, we first check whether a new star is within the "mincap"
of any healpix. If so, we stick it in that healpix and continue.
Otherwise, we check all the "maxcaps" -- these are the healpixes
it could *possibly* be in. We then refine with
healpix_within_range_of_xyz. The maxcap distance is the distance
to the furthest boundary point, PLUS the margin distance.
*/
cap_t* mincaps = malloc(NHP * sizeof(cap_t));
cap_t* maxcaps = malloc(NHP * sizeof(cap_t));
for (i=0; i<NHP; i++) {
// center
double r2;
double xyz[3];
double* cxyz;
double step = 1e-3;
double v;
double r2b, r2a;
cxyz = mincaps[i].xyz;
healpix_to_xyzarr(i, nside, 0.5, 0.5, mincaps[i].xyz);
memcpy(maxcaps[i].xyz, cxyz, 3 * sizeof(double));
logverb("Center of HP %i: (%.3f, %.3f, %.3f)\n", i, cxyz[0], cxyz[1], cxyz[2]);
// radius-squared:
// max is the easy one: max of the four corners (I assume)
r2 = 0.0;
healpix_to_xyzarr(i, nside, 0.0, 0.0, xyz);
logverb(" HP %i corner 1: (%.3f, %.3f, %.3f), distsq %.3f\n", i, xyz[0], xyz[1], xyz[2], distsq(xyz, cxyz, 3));
r2 = MAX(r2, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, 1.0, 0.0, xyz);
logverb(" HP %i corner 1: (%.3f, %.3f, %.3f), distsq %.3f\n", i, xyz[0], xyz[1], xyz[2], distsq(xyz, cxyz, 3));
r2 = MAX(r2, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, 0.0, 1.0, xyz);
logverb(" HP %i corner 1: (%.3f, %.3f, %.3f), distsq %.3f\n", i, xyz[0], xyz[1], xyz[2], distsq(xyz, cxyz, 3));
r2 = MAX(r2, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, 1.0, 1.0, xyz);
logverb(" HP %i corner 1: (%.3f, %.3f, %.3f), distsq %.3f\n", i, xyz[0], xyz[1], xyz[2], distsq(xyz, cxyz, 3));
r2 = MAX(r2, distsq(xyz, cxyz, 3));
logverb(" max distsq: %.3f\n", r2);
logverb(" margin dist: %.3f\n", md);
maxcaps[i].r2 = square(sqrt(r2) + md);
logverb(" max cap distsq: %.3f\n", maxcaps[i].r2);
r2a = r2;
r2 = 1.0;
r2b = 0.0;
for (v=0; v<=1.0; v+=step) {
healpix_to_xyzarr(i, nside, 0.0, v, xyz);
r2 = MIN(r2, distsq(xyz, cxyz, 3));
r2b = MAX(r2b, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, 1.0, v, xyz);
r2 = MIN(r2, distsq(xyz, cxyz, 3));
r2b = MAX(r2b, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, v, 0.0, xyz);
r2 = MIN(r2, distsq(xyz, cxyz, 3));
r2b = MAX(r2b, distsq(xyz, cxyz, 3));
healpix_to_xyzarr(i, nside, v, 1.0, xyz);
r2 = MIN(r2, distsq(xyz, cxyz, 3));
r2b = MAX(r2b, distsq(xyz, cxyz, 3));
}
mincaps[i].r2 = square(MAX(0, sqrt(r2) - md));
logverb("\nhealpix %i: min rad %g\n", i, sqrt(r2));
logverb("healpix %i: max rad %g\n", i, sqrt(r2a));
logverb("healpix %i: max rad(b) %g\n", i, sqrt(r2b));
assert(r2a >= r2b);
}
if (backref) {
fitstable_t* tab = fitstable_open_for_writing(backref);
int maxlen = 0;
char* buf;
for (i=0; i<sl_size(infns); i++) {
char* infn = sl_get(infns, i);
maxlen = MAX(maxlen, strlen(infn));
}
fitstable_add_write_column_array(tab, fitscolumn_char_type(), maxlen,
"filename", NULL);
fitstable_add_write_column(tab, fitscolumn_i16_type(), "index", NULL);
if (fitstable_write_primary_header(tab) ||
fitstable_write_header(tab)) {
ERROR("Failed to write header of backref table \"%s\"", backref);
exit(-1);
}
buf = malloc(maxlen+1);
assert(buf);
for (i=0; i<sl_size(infns); i++) {
char* infn = sl_get(infns, i);
int16_t ind;
memset(buf, 0, maxlen);
strcpy(buf, infn);
ind = i;
if (fitstable_write_row(tab, buf, &ind)) {
ERROR("Failed to write row %i of backref table: %s = %i",
i, buf, ind);
exit(-1);
}
}
if (fitstable_fix_header(tab) ||
fitstable_close(tab)) {
ERROR("Failed to fix header & close backref table");
exit(-1);
}
logmsg("Wrote backref table %s\n", backref);
free(buf);
}
for (i=0; i<sl_size(infns); i++) {
char* infn = sl_get(infns, i);
char* originfn = infn;
int r, NR;
tfits_type any, dubl;
il* hps = NULL;
bread_t* rowbuf;
int R;
char* tempfn = NULL;
char* padrowdata = NULL;
int ii;
logmsg("Reading input \"%s\"...\n", infn);
if (gzip) {
char* cmd;
int rtn;
tempfn = create_temp_file("hpsplit", tempdir);
asprintf_safe(&cmd, "gunzip -cd %s > %s", infn, tempfn);
logmsg("Running: \"%s\"\n", cmd);
rtn = run_command_get_outputs(cmd, NULL, NULL);
if (rtn) {
ERROR("Failed to run command: \"%s\"", cmd);
exit(-1);
}
free(cmd);
infn = tempfn;
}
intable = fitstable_open(infn);
if (!intable) {
ERROR("Couldn't read catalog %s", infn);
exit(-1);
}
NR = fitstable_nrows(intable);
logmsg("Got %i rows\n", NR);
any = fitscolumn_any_type();
dubl = fitscolumn_double_type();
fitstable_add_read_column_struct(intable, dubl, 1, 0, any, racol, TRUE);
fitstable_add_read_column_struct(intable, dubl, 1, sizeof(double), any, deccol, TRUE);
fitstable_use_buffered_reading(intable, 2*sizeof(double), 1000);
R = fitstable_row_size(intable);
rowbuf = buffered_read_new(R, 1000, NR, refill_rowbuffer, intable);
if (fitstable_read_extension(intable, 1)) {
ERROR("Failed to find RA and DEC columns (called \"%s\" and \"%s\" in the FITS file)", racol, deccol);
exit(-1);
}
for (r=0; r<NR; r++) {
int hp = -1;
double ra, dec;
int j;
double* rd;
void* rowdata;
void* rdata;
if (r && ((r % 100000) == 0)) {
logmsg("Reading row %i of %i\n", r, NR);
}
//printf("reading RA,Dec for row %i\n", r);
rd = fitstable_next_struct(intable);
ra = rd[0];
dec = rd[1];
logverb("row %i: ra,dec %g,%g\n", r, ra, dec);
if (margin == 0) {
hp = radecdegtohealpix(ra, dec, nside);
logverb(" --> healpix %i\n", hp);
} else {
double xyz[3];
anbool gotit = FALSE;
double d2;
if (!hps)
hps = il_new(4);
radecdeg2xyzarr(ra, dec, xyz);
for (j=0; j<NHP; j++) {
d2 = distsq(xyz, mincaps[j].xyz, 3);
if (d2 <= mincaps[j].r2) {
logverb(" -> in mincap %i (dist %g vs %g)\n", j, sqrt(d2), sqrt(mincaps[j].r2));
il_append(hps, j);
gotit = TRUE;
break;
}
}
if (!gotit) {
for (j=0; j<NHP; j++) {
d2 = distsq(xyz, maxcaps[j].xyz, 3);
if (d2 <= maxcaps[j].r2) {
logverb(" -> in maxcap %i (dist %g vs %g)\n", j, sqrt(d2), sqrt(maxcaps[j].r2));
if (healpix_within_range_of_xyz(j, nside, xyz, margin)) {
logverb(" -> and within range.\n");
il_append(hps, j);
}
}
}
}
//hps = healpix_rangesearch_radec(ra, dec, margin, nside, hps);
logverb(" --> healpixes: [");
for (j=0; j<il_size(hps); j++)
logverb(" %i", il_get(hps, j));
logverb(" ]\n");
}
//printf("Reading rowdata for row %i\n", r);
rowdata = buffered_read(rowbuf);
assert(rowdata);
j=0;
while (1) {
if (hps) {
if (j >= il_size(hps))
break;
hp = il_get(hps, j);
j++;
}
assert(hp < NHP);
assert(hp >= 0);
if (!outtables[hp]) {
char* outfn;
fitstable_t* out;
// MEMLEAK the output filename. You'll live.
asprintf_safe(&outfn, outfnpat, hp);
logmsg("Opening output file \"%s\"...\n", outfn);
out = fitstable_open_for_writing(outfn);
if (!out) {
ERROR("Failed to open output table \"%s\"", outfn);
exit(-1);
}
// Set the output table structure.
if (cols) {
fitstable_add_fits_columns_as_struct3(intable, out, cols, 0);
} else
fitstable_add_fits_columns_as_struct2(intable, out);
if (backref) {
tfits_type i16type;
tfits_type i32type;
// R = fitstable_row_size(intable);
int off = R;
i16type = fitscolumn_i16_type();
i32type = fitscolumn_i32_type();
fitstable_add_read_column_struct(out, i16type, 1, off,
i16type, "backref_file", TRUE);
off += sizeof(int16_t);
fitstable_add_read_column_struct(out, i32type, 1, off,
i32type, "backref_index", TRUE);
}
//printf("Output table:\n");
//fitstable_print_columns(out);
if (fitstable_write_primary_header(out) ||
fitstable_write_header(out)) {
ERROR("Failed to write output file headers for \"%s\"", outfn);
exit(-1);
}
outtables[hp] = out;
}
if (backref) {
int16_t brfile;
int32_t brind;
if (!padrowdata) {
padrowdata = malloc(R + sizeof(int16_t) + sizeof(int32_t));
assert(padrowdata);
}
// convert to FITS endian
brfile = htons(i);
brind = htonl(r);
// add backref data to rowdata
memcpy(padrowdata, rowdata, R);
memcpy(padrowdata + R, &brfile, sizeof(int16_t));
memcpy(padrowdata + R + sizeof(int16_t), &brind, sizeof(int32_t));
rdata = padrowdata;
} else {
rdata = rowdata;
}
if (cols) {
if (fitstable_write_struct_noflip(outtables[hp], rdata)) {
ERROR("Failed to copy a row of data from input table \"%s\" to output healpix %i", infn, hp);
}
} else {
if (fitstable_write_row_data(outtables[hp], rdata)) {
ERROR("Failed to copy a row of data from input table \"%s\" to output healpix %i", infn, hp);
}
}
if (!hps)
break;
}
if (hps)
il_remove_all(hps);
}
buffered_read_free(rowbuf);
// wack... buffered_read_free() just frees its internal buffer,
// not the "rowbuf" struct itself.
// who wrote this crazy code? Oh, me of 5 years ago. Jerk.
free(rowbuf);
fitstable_close(intable);
il_free(hps);
if (tempfn) {
logverb("Removing temp file %s\n", tempfn);
if (unlink(tempfn)) {
SYSERROR("Failed to unlink() temp file \"%s\"", tempfn);
}
tempfn = NULL;
}
// fix headers so that the files are valid at this point.
for (ii=0; ii<NHP; ii++) {
if (!outtables[ii])
continue;
off_t offset = ftello(outtables[ii]->fid);
if (fitstable_fix_header(outtables[ii])) {
ERROR("Failed to fix header for healpix %i after reading input file \"%s\"", ii, originfn);
exit(-1);
}
fseeko(outtables[ii]->fid, offset, SEEK_SET);
}
if (padrowdata) {
free(padrowdata);
padrowdata = NULL;
}
}
for (i=0; i<NHP; i++) {
if (!outtables[i])
continue;
if (fitstable_fix_header(outtables[i]) ||
fitstable_fix_primary_header(outtables[i]) ||
fitstable_close(outtables[i])) {
ERROR("Failed to close output table for healpix %i", i);
exit(-1);
}
}
free(outtables);
sl_free2(infns);
sl_free2(cols);
free(mincaps);
free(maxcaps);
return 0;
}
int uniformize_catalog(fitstable_t* intable, fitstable_t* outtable,
const char* racol, const char* deccol,
const char* sortcol, anbool sort_ascending,
double sort_min_cut,
// ? Or do this cut in a separate process?
int bighp, int bignside,
int nmargin,
// uniformization nside.
int Nside,
double dedup_radius,
int nsweeps,
char** args, int argc) {
anbool allsky;
intmap_t* starlists;
int NHP;
anbool dense = FALSE;
double dedupr2 = 0.0;
tfits_type dubl;
int N;
int* inorder = NULL;
int* outorder = NULL;
int outi;
double *ra = NULL, *dec = NULL;
il* myhps = NULL;
int i,j,k;
int nkeep = nsweeps;
int noob = 0;
int ndup = 0;
struct oh_token token;
int* npersweep = NULL;
qfits_header* outhdr = NULL;
double *sortval = NULL;
if (bignside == 0)
bignside = 1;
allsky = (bighp == -1);
if (Nside % bignside) {
ERROR("Fine healpixelization Nside must be a multiple of the coarse healpixelization Nside");
return -1;
}
if (Nside > HP_MAX_INT_NSIDE) {
ERROR("Error: maximum healpix Nside = %i", HP_MAX_INT_NSIDE);
return -1;
}
NHP = 12 * Nside * Nside;
logverb("Healpix Nside: %i, # healpixes on the whole sky: %i\n", Nside, NHP);
if (!allsky) {
logverb("Creating index for healpix %i, nside %i\n", bighp, bignside);
logverb("Number of healpixes: %i\n", ((Nside/bignside)*(Nside/bignside)));
}
logverb("Healpix side length: %g arcmin.\n", healpix_side_length_arcmin(Nside));
dubl = fitscolumn_double_type();
if (!racol)
racol = "RA";
ra = fitstable_read_column(intable, racol, dubl);
if (!ra) {
ERROR("Failed to find RA column (%s) in table", racol);
return -1;
}
if (!deccol)
deccol = "DEC";
dec = fitstable_read_column(intable, deccol, dubl);
if (!dec) {
ERROR("Failed to find DEC column (%s) in table", deccol);
free(ra);
return -1;
}
N = fitstable_nrows(intable);
logverb("Have %i objects\n", N);
// FIXME -- argsort and seek around the input table, and append to
// starlists in order; OR read from the input table in sequence and
// sort in the starlists?
if (sortcol) {
logverb("Sorting by %s...\n", sortcol);
sortval = fitstable_read_column(intable, sortcol, dubl);
if (!sortval) {
ERROR("Failed to read sorting column \"%s\"", sortcol);
free(ra);
free(dec);
return -1;
}
inorder = permuted_sort(sortval, sizeof(double),
sort_ascending ? compare_doubles_asc : compare_doubles_desc,
NULL, N);
if (sort_min_cut > -HUGE_VAL) {
logverb("Cutting to %s > %g...\n", sortcol, sort_min_cut);
// Cut objects with sortval < sort_min_cut.
if (sort_ascending) {
// skipped objects are at the front -- find the first obj
// to keep
for (i=0; i<N; i++)
if (sortval[inorder[i]] > sort_min_cut)
break;
// move the "inorder" indices down.
if (i)
memmove(inorder, inorder+i, (N-i)*sizeof(int));
N -= i;
} else {
// skipped objects are at the end -- find the last obj to keep.
for (i=N-1; i>=0; i--)
if (sortval[inorder[i]] > sort_min_cut)
break;
N = i+1;
}
logverb("Cut to %i objects\n", N);
}
//free(sortval);
}
token.nside = bignside;
token.finenside = Nside;
token.hp = bighp;
if (!allsky && nmargin) {
int bigbighp, bighpx, bighpy;
//int ninside;
il* seeds = il_new(256);
logverb("Finding healpixes in range...\n");
healpix_decompose_xy(bighp, &bigbighp, &bighpx, &bighpy, bignside);
//ninside = (Nside/bignside)*(Nside/bignside);
// Prime the queue with the fine healpixes that are on the
// boundary of the big healpix.
for (i=0; i<((Nside / bignside) - 1); i++) {
// add (i,0), (i,max), (0,i), and (0,max) healpixes
int xx = i + bighpx * (Nside / bignside);
int yy = i + bighpy * (Nside / bignside);
int y0 = bighpy * (Nside / bignside);
// -1 prevents us from double-adding the corners.
int y1 =(1 + bighpy)* (Nside / bignside) - 1;
int x0 = bighpx * (Nside / bignside);
int x1 =(1 + bighpx)* (Nside / bignside) - 1;
assert(xx < Nside);
assert(yy < Nside);
assert(x0 < Nside);
assert(x1 < Nside);
assert(y0 < Nside);
assert(y1 < Nside);
il_append(seeds, healpix_compose_xy(bigbighp, xx, y0, Nside));
il_append(seeds, healpix_compose_xy(bigbighp, xx, y1, Nside));
il_append(seeds, healpix_compose_xy(bigbighp, x0, yy, Nside));
il_append(seeds, healpix_compose_xy(bigbighp, x1, yy, Nside));
}
logmsg("Number of boundary healpixes: %zu (Nside/bignside = %i)\n", il_size(seeds), Nside/bignside);
myhps = healpix_region_search(-1, seeds, Nside, NULL, NULL,
outside_healpix, &token, nmargin);
logmsg("Number of margin healpixes: %zu\n", il_size(myhps));
il_free(seeds);
il_sort(myhps, TRUE);
// DEBUG
il_check_consistency(myhps);
il_check_sorted_ascending(myhps, TRUE);
}
dedupr2 = arcsec2distsq(dedup_radius);
starlists = intmap_new(sizeof(int32_t), nkeep, 0, dense);
logverb("Placing stars in grid cells...\n");
for (i=0; i<N; i++) {
int hp;
bl* lst;
int32_t j32;
anbool oob;
if (inorder) {
j = inorder[i];
//printf("Placing star %i (%i): sort value %s = %g, RA,Dec=%g,%g\n", i, j, sortcol, sortval[j], ra[j], dec[j]);
} else
j = i;
hp = radecdegtohealpix(ra[j], dec[j], Nside);
//printf("HP %i\n", hp);
// in bounds?
oob = FALSE;
if (myhps) {
oob = (outside_healpix(hp, &token) && !il_sorted_contains(myhps, hp));
} else if (!allsky) {
oob = (outside_healpix(hp, &token));
}
if (oob) {
//printf("out of bounds.\n");
noob++;
continue;
}
lst = intmap_find(starlists, hp, TRUE);
/*
printf("list has %i existing entries.\n", bl_size(lst));
for (k=0; k<bl_size(lst); k++) {
bl_get(lst, k, &j32);
printf(" %i: index %i, %s = %g\n", k, j32, sortcol, sortval[j32]);
}
*/
// is this list full?
if (nkeep && (bl_size(lst) >= nkeep)) {
// Here we assume we're working in sorted order: once the list is full we're done.
//printf("Skipping: list is full.\n");
continue;
}
if ((dedupr2 > 0.0) &&
is_duplicate(hp, ra[j], dec[j], Nside, starlists, ra, dec, dedupr2)) {
//printf("Skipping: duplicate\n");
ndup++;
continue;
}
// Add the new star (by index)
j32 = j;
bl_append(lst, &j32);
}
logverb("%i outside the healpix\n", noob);
logverb("%i duplicates\n", ndup);
il_free(myhps);
myhps = NULL;
free(inorder);
inorder = NULL;
free(ra);
ra = NULL;
free(dec);
dec = NULL;
outorder = malloc(N * sizeof(int));
outi = 0;
npersweep = calloc(nsweeps, sizeof(int));
for (k=0; k<nsweeps; k++) {
int starti = outi;
int32_t j32;
for (i=0;; i++) {
bl* lst;
int hp;
if (!intmap_get_entry(starlists, i, &hp, &lst))
break;
if (bl_size(lst) <= k)
continue;
bl_get(lst, k, &j32);
outorder[outi] = j32;
//printf("sweep %i, cell #%i, hp %i, star %i, %s = %g\n", k, i, hp, j32, sortcol, sortval[j32]);
outi++;
}
logmsg("Sweep %i: %i stars\n", k+1, outi - starti);
npersweep[k] = outi - starti;
if (sortcol) {
// Re-sort within this sweep.
permuted_sort(sortval, sizeof(double),
sort_ascending ? compare_doubles_asc : compare_doubles_desc,
outorder + starti, npersweep[k]);
/*
for (i=0; i<npersweep[k]; i++) {
printf(" within sweep %i: star %i, j=%i, %s=%g\n",
k, i, outorder[starti + i], sortcol, sortval[outorder[starti + i]]);
}
*/
}
}
intmap_free(starlists);
starlists = NULL;
//////
free(sortval);
sortval = NULL;
logmsg("Total: %i stars\n", outi);
N = outi;
outhdr = fitstable_get_primary_header(outtable);
if (allsky)
qfits_header_add(outhdr, "ALLSKY", "T", "All-sky catalog.", NULL);
BOILERPLATE_ADD_FITS_HEADERS(outhdr);
qfits_header_add(outhdr, "HISTORY", "This file was generated by the command-line:", NULL, NULL);
fits_add_args(outhdr, args, argc);
qfits_header_add(outhdr, "HISTORY", "(end of command line)", NULL, NULL);
fits_add_long_history(outhdr, "uniformize-catalog args:");
fits_add_long_history(outhdr, " RA,Dec columns: %s,%s", racol, deccol);
fits_add_long_history(outhdr, " sort column: %s", sortcol);
fits_add_long_history(outhdr, " sort direction: %s", sort_ascending ? "ascending" : "descending");
if (sort_ascending)
fits_add_long_history(outhdr, " (ie, for mag-like sort columns)");
else
fits_add_long_history(outhdr, " (ie, for flux-like sort columns)");
fits_add_long_history(outhdr, " uniformization nside: %i", Nside);
fits_add_long_history(outhdr, " (ie, side length ~ %g arcmin)", healpix_side_length_arcmin(Nside));
fits_add_long_history(outhdr, " deduplication scale: %g arcsec", dedup_radius);
fits_add_long_history(outhdr, " number of sweeps: %i", nsweeps);
fits_header_add_int(outhdr, "NSTARS", N, "Number of stars.");
fits_header_add_int(outhdr, "HEALPIX", bighp, "Healpix covered by this catalog, with Nside=HPNSIDE");
fits_header_add_int(outhdr, "HPNSIDE", bignside, "Nside of HEALPIX.");
fits_header_add_int(outhdr, "CUTNSIDE", Nside, "uniformization scale (healpix nside)");
fits_header_add_int(outhdr, "CUTMARG", nmargin, "margin size, in healpixels");
//qfits_header_add(outhdr, "CUTBAND", cutband, "band on which the cut was made", NULL);
fits_header_add_double(outhdr, "CUTDEDUP", dedup_radius, "deduplication radius [arcsec]");
fits_header_add_int(outhdr, "CUTNSWEP", nsweeps, "number of sweeps");
//fits_header_add_double(outhdr, "CUTMINMG", minmag, "minimum magnitude");
//fits_header_add_double(outhdr, "CUTMAXMG", maxmag, "maximum magnitude");
for (k=0; k<nsweeps; k++) {
char key[64];
sprintf(key, "SWEEP%i", (k+1));
fits_header_add_int(outhdr, key, npersweep[k], "# stars added");
}
free(npersweep);
if (fitstable_write_primary_header(outtable)) {
ERROR("Failed to write primary header");
return -1;
}
// Write output.
fitstable_add_fits_columns_as_struct2(intable, outtable);
if (fitstable_write_header(outtable)) {
ERROR("Failed to write output table header");
return -1;
}
logmsg("Writing output...\n");
logverb("Row size: %i\n", fitstable_row_size(intable));
if (fitstable_copy_rows_data(intable, outorder, N, outtable)) {
ERROR("Failed to copy rows from input table to output");
return -1;
}
if (fitstable_fix_header(outtable)) {
ERROR("Failed to fix output table header");
return -1;
}
free(outorder);
return 0;
}
void gl_free(graph_list* g) {
int i;
for (i = 0; i < g->n; i++)
il_free(g->list_array[i]);
free(g);
}
int wcs_rd2xy(const char* wcsfn, int wcsext,
const char* rdlsfn, const char* xylsfn,
const char* racol, const char* deccol,
anbool forcetan, anbool forcewcslib,
il* fields) {
xylist_t* xyls = NULL;
rdlist_t* rdls = NULL;
anwcs_t* wcs = NULL;
int i;
anbool alloced_fields = FALSE;
int rtn = -1;
// read WCS.
if (forcewcslib) {
wcs = anwcs_open_wcslib(wcsfn, wcsext);
} else if (forcetan) {
wcs = anwcs_open_tan(wcsfn, wcsext);
} else {
wcs = anwcs_open(wcsfn, wcsext);
}
if (!wcs) {
ERROR("Failed to read WCS file \"%s\", extension %i", wcsfn, wcsext);
return -1;
}
// read RDLS.
rdls = rdlist_open(rdlsfn);
if (!rdls) {
ERROR("Failed to read an RA,Dec list from file %s", rdlsfn);
goto bailout;
}
if (racol)
rdlist_set_raname(rdls, racol);
if (deccol)
rdlist_set_decname(rdls, deccol);
// write XYLS.
xyls = xylist_open_for_writing(xylsfn);
if (!xyls) {
ERROR("Failed to open file %s to write XYLS", xylsfn);
goto bailout;
}
if (xylist_write_primary_header(xyls)) {
ERROR("Failed to write header to XYLS file %s", xylsfn);
goto bailout;
}
if (!fields) {
alloced_fields = TRUE;
fields = il_new(16);
}
if (!il_size(fields)) {
// add all fields.
int NF = rdlist_n_fields(rdls);
for (i=1; i<=NF; i++)
il_append(fields, i);
}
for (i=0; i<il_size(fields); i++) {
int fieldnum = il_get(fields, i);
int j;
starxy_t xy;
rd_t rd;
if (!rdlist_read_field_num(rdls, fieldnum, &rd)) {
ERROR("Failed to read rdls file \"%s\" field %i", rdlsfn, fieldnum);
goto bailout;
}
starxy_alloc_data(&xy, rd_n(&rd), FALSE, FALSE);
if (xylist_write_header(xyls)) {
ERROR("Failed to write xyls field header");
goto bailout;
}
for (j=0; j<rd_n(&rd); j++) {
double x, y, ra, dec;
ra = rd_getra (&rd, j);
dec = rd_getdec(&rd, j);
if (anwcs_radec2pixelxy(wcs, ra, dec, &x, &y)) {
ERROR("Point RA,Dec = (%g,%g) projects to the opposite side of the sphere", ra, dec);
starxy_set(&xy, j, NAN, NAN);
continue;
}
starxy_set(&xy, j, x, y);
}
if (xylist_write_field(xyls, &xy)) {
ERROR("Failed to write xyls field");
goto bailout;
}
if (xylist_fix_header(xyls)) {
ERROR("Failed to fix xyls field header");
goto bailout;
}
xylist_next_field(xyls);
starxy_free_data(&xy);
rd_free_data(&rd);
}
if (xylist_fix_primary_header(xyls) ||
xylist_close(xyls)) {
ERROR("Failed to fix header of XYLS file");
goto bailout;
}
xyls = NULL;
if (rdlist_close(rdls)) {
ERROR("Failed to close RDLS file");
goto bailout;
}
rdls = NULL;
rtn = 0;
bailout:
if (alloced_fields)
il_free(fields);
if (rdls)
rdlist_close(rdls);
if (xyls)
xylist_close(xyls);
if (wcs)
anwcs_free(wcs);
return rtn;
}
static void dualtree_rs_recurse(kdtree_t* xtree, kdtree_t* ytree,
il* xnodes, il* xleaves,
bl* xnodebbs, bl* xleafbbs,
int ynode,
ttype* ybb,
double maxd2,
rangesearch_callback cb, void* baton) {
int leafmarker;
il* childnodes;
int i, N;
ttype oldbbval;
ttype splitval;
uint8_t splitdim;
// if the query node is a leaf...
if (KD_IS_LEAF(ytree, ynode)) {
// ... then run the result function on each x node
/*
if (callbacks->start_results)
callbacks->start_results(callbacks->start_extra, ytree, ynode);
*/
if (cb) {
// non-leaf nodes
N = il_size(xnodes);
for (i=0; i<N; i++)
dtrs_nodes(xtree, ytree, il_get(xnodes, i), ynode, maxd2, cb, baton);
// leaf nodes
N = il_size(xleaves);
for (i=0; i<N; i++)
dtrs_nodes(xtree, ytree, il_get(xleaves, i), ynode, maxd2, cb, baton);
}
/*
if (callbacks->end_results)
callbacks->end_results(callbacks->end_extra, ytree, ynode);
*/
return;
}
// if there are search leaves but no search nodes, run the result
// function on each leaf. (Note that the query node is not a leaf!)
if (!il_size(xnodes)) {
/*
result_function result = callbacks->result;
void* result_extra = callbacks->result_extra;
if (callbacks->start_results)
callbacks->start_results(callbacks->start_extra, ytree, ynode);
*/
// leaf nodes
if (result) {
N = il_size(xleaves);
for (i=0; i<N; i++)
dtrs_nodes(xtree, ytree, il_get(xleaves, i), ynode, maxd2, cb, baton);
//result(result_extra, xtree, il_get(leaves, i), ytree, ynode);
}
/*
if (callbacks->end_results)
callbacks->end_results(callbacks->end_extra, ytree, ynode);
*/
return;
}
leafmarker = il_size(leaves);
childnodes = il_new(256);
#define BBLO(bb, d) ((bb)[2*(d)])
#define BBHI(bb, d) ((bb)[(2*(d))+1])
N = il_size(xnodes);
for (i=0; i<N; i++) {
int child1, child2;
int xnode = il_get(xnodes, i);
ttype* xbb = bl_access(xnodebbs, i);
ttype* leftbb;
ttype* rightbb;
/*
node-node range...
if (!decision(decision_extra, xtree, xnode, ytree, ynode))
continue;
*/
split_dim_and_value(xtree, xnode, &splitdim, &splitval);
child1 = KD_CHILD_LEFT(xnode);
if (KD_IS_LEAF(xtree, child1)) {
il_append(xleaves, child1);
il_append(xleaves, child2);
leftbb = bl_append(xleafbbs, xbb);
rightbb = bl_append(xleafbbs, xbb);
} else {
il_append(childnodes, child1);
il_append(childnodes, child2);
leftbb = bl_append(xnodebbs, xbb);
rightbb = bl_append(xnodebbs, xbb);
}
BBHI(leftbb, splitdim) = splitval;
BBLO(rightbb, splitdim) = splitval;
}
printf("dualtree: start left child of y node %i: %i\n", ynode, KD_CHILD_LEFT(ynode));
// recurse on the Y children!
split_dim_and_value(ytree, ynode, &splitdim, &splitval);
// update y bb for the left child: max(splitdim) = splitval
oldbbval = BBHI(ybb, splitdim);
BBHI(ybb, splitdim) = splitval;
dualtree_recurse(xtree, ytree, childnodes, leaves,
KD_CHILD_LEFT(ynode), callbacks);
BBHI(ybb, splitdim) = oldbbval;
printf("dualtree: done left child of y node %i: %i\n", ynode, KD_CHILD_LEFT(ynode));
printf("dualtree: start right child of y node %i: %i\n", ynode, KD_CHILD_RIGHT(ynode));
// update y bb for the right child: min(splitdim) = splitval
oldbbval = BBLO(ybb, splitdim);
BBLO(ybb, splitdim) = splitval;
dualtree_recurse(xtree, ytree, childnodes, leaves,
KD_CHILD_RIGHT(ynode), callbacks);
BBLO(ybb, splitdim) = oldbbval;
printf("dualtree: done right child of y node %i: %i\n", ynode, KD_CHILD_LEFT(ynode));
// put the "leaves" list back the way it was...
il_remove_index_range(leaves, leafmarker, il_size(leaves)-leafmarker);
il_free(childnodes);
}
int main(int argc, char** args) {
int argchar;
kdtree_t* kd;
int Nleaf = 25;
char* infn = NULL;
char* outfn = NULL;
char* tychofn = NULL;
char* crossfn = NULL;
char* progname = args[0];
FILE* f;
tycstar_t* tycstars = NULL;
int Ntyc = 0;
int exttype = KDT_EXT_DOUBLE;
int datatype = KDT_DATA_U32;
int treetype = KDT_TREE_U32;
int tt;
int buildopts = 0;
int i, N, D;
dl* ras;
dl* decs;
dl* hds;
fl* mag1s;
fl* mag2s;
fl* mag3s;
int nbad = 0;
int nox = 0;
int* hd;
double* xyz;
qfits_header* hdr;
while ((argchar = getopt (argc, args, OPTIONS)) != -1)
switch (argchar) {
case 'T':
tychofn = optarg;
break;
case 'X':
crossfn = optarg;
break;
case 'R':
Nleaf = (int)strtoul(optarg, NULL, 0);
break;
case 't':
treetype = kdtree_kdtype_parse_tree_string(optarg);
break;
case 'd':
datatype = kdtree_kdtype_parse_data_string(optarg);
break;
case 'b':
buildopts |= KD_BUILD_BBOX;
break;
case 's':
buildopts |= KD_BUILD_SPLIT;
break;
case 'S':
buildopts |= KD_BUILD_SPLITDIM;
break;
case '?':
fprintf(stderr, "Unknown option `-%c'.\n", optopt);
case 'h':
printHelp(progname);
return 0;
default:
return -1;
}
if (optind != argc - 2) {
printHelp(progname);
exit(-1);
}
infn = args[optind];
outfn = args[optind+1];
if (!(buildopts & (KD_BUILD_BBOX | KD_BUILD_SPLIT))) {
printf("You need bounding-boxes or splitting planes!\n");
printHelp(progname);
exit(-1);
}
if (tychofn || crossfn) {
if (!(tychofn && crossfn)) {
printf("You need both -T <Tycho2> and -X <Crossref> to do cross-referencing.\n");
exit(-1);
}
}
if (tychofn) {
int i, N;
tycho2_fits* tyc;
FILE* f;
int nx, nox;
int lastgrass = 0;
tyc = tycho2_fits_open(tychofn);
if (!tyc) {
ERROR("Failed to open Tycho-2 catalog.");
exit(-1);
}
printf("Reading Tycho-2 catalog...\n");
N = tycho2_fits_count_entries(tyc);
tycstars = calloc(N, sizeof(tycstar_t));
for (i=0; i<N; i++) {
tycho2_entry* te;
int grass = (i*80 / N);
if (grass != lastgrass) {
printf(".");
fflush(stdout);
lastgrass = grass;
}
te = tycho2_fits_read_entry(tyc);
tycstars[i].tyc1 = te->tyc1;
tycstars[i].tyc2 = te->tyc2;
tycstars[i].tyc3 = te->tyc3;
tycstars[i].ra = te->ra;
tycstars[i].dec = te->dec;
tycstars[i].mag_BT = te->mag_BT;
tycstars[i].mag_VT = te->mag_VT;
tycstars[i].mag_HP = te->mag_HP;
}
tycho2_fits_close(tyc);
printf("Sorting...\n");
qsort(tycstars, N, sizeof(tycstar_t), compare_tycs);
Ntyc = N;
f = fopen(crossfn, "rb");
if (!f) {
SYSERROR("Failed to open cross-reference file %s", crossfn);
exit(-1);
}
nx = 0;
nox = 0;
while (TRUE) {
char buf[1024];
int tyc1, tyc2, tyc3, hd, nhd, ntyc;
char ftyc, sptype0, sptype1, sptype2;
tycstar_t* s;
if (!fgets(buf, sizeof(buf), f)) {
if (ferror(f)) {
SYSERROR("Failed to read a line of text from the cross-reference file");
exit(-1);
}
break;
}
if (sscanf(buf, " %d %d %d%c %d %c%c%c %d %d",
&tyc1, &tyc2, &tyc3, &ftyc, &hd,
&sptype0, &sptype1, &sptype2, &nhd, &ntyc) != 10) {
ERROR("Failed to parse line: \"%s\"", buf);
}
//printf("%i %i %i %i %i %i\n", tyc1, tyc2, tyc3, hd, nhd, ntyc);
s = find_tycho(tycstars, Ntyc, tyc1, tyc2, tyc3);
if (!s) {
ERROR("Failed to find Tycho-2 star %i-%i-%i", tyc1, tyc2, tyc3);
nox++;
} else {
s->hd = hd;
s->ntyc = ntyc;
}
nx++;
}
fclose(f);
printf("Read %i cross-references.\n", nx);
printf("Failed to find %i cross-referenced Tycho-2 stars.\n", nox);
printf("Sorting...\n");
qsort(tycstars, N, sizeof(tycstar_t), compare_hds);
}
f = fopen(infn, "rb");
if (!f) {
SYSERROR("Failed to open input file %s", infn);
exit(-1);
}
ras = dl_new(1024);
decs = dl_new(1024);
hds = il_new(1024);
mag1s = fl_new(1024);
mag2s = fl_new(1024);
mag3s = fl_new(1024);
printf("Reading HD catalog...\n");
for (;;) {
char buf[1024];
double ra, dec;
int hd;
float mag1, mag2, mag3;
mag1 = mag2 = mag3 = 0.0;
if (!fgets(buf, sizeof(buf), f)) {
if (ferror(f)) {
SYSERROR("Failed to read a line of text from the input file");
exit(-1);
}
break;
}
if (buf[0] == '#')
continue;
if (buf[0] == '\n')
continue;
if (sscanf(buf, " %lf| %lf| %d", &ra, &dec, &hd) < 3) {
// ignore three invalid lines
if (nbad > 3) {
ERROR("Failed to parse line: \"%s\"", buf);
}
nbad++;
} else {
if (tycstars) {
tycstar_t* s = find_hd(tycstars, Ntyc, hd);
if (!s) {
//printf("Failed to find cross-ref for HD %i\n", hd);
nox++;
} else {
ra = s->ra;
dec = s->dec;
mag1 = s->mag_VT;
mag2 = s->mag_BT;
mag3 = s->mag_HP;
}
}
dl_append(ras, ra);
dl_append(decs, dec);
il_append(hds, hd);
fl_append(mag1s, mag1);
fl_append(mag2s, mag2);
fl_append(mag3s, mag3);
}
}
fclose(f);
N = dl_size(ras);
printf("Read %i entries and %i bad lines.\n", N, nbad);
if (dl_size(ras) != HD_NENTRIES) {
printf("WARNING: expected %i Henry Draper catalog entries.\n", HD_NENTRIES);
}
if (nox) {
printf("Found %i HD entries with no cross-reference (expect this to be about 1%%)\n", nox);
}
hd = malloc(sizeof(int) * N);
il_copy(hds, 0, N, hd);
il_free(hds);
for (i=0; i<N; i++)
if (hd[i] != i+1) {
printf("Line %i is HD %i\n", i+1, hd[i]);
break;
}
// HACK - don't allocate 'em in the first place...
free(hd);
xyz = malloc(sizeof(double) * 3 * N);
for (i=0; i<N; i++) {
radecdeg2xyzarr(dl_get(ras, i), dl_get(decs, i), xyz + 3*i);
}
dl_free(ras);
dl_free(decs);
tt = kdtree_kdtypes_to_treetype(exttype, treetype, datatype);
D = 3;
{
// limits of the kdtree...
double lo[] = {-1.0, -1.0, -1.0};
double hi[] = { 1.0, 1.0, 1.0};
kd = kdtree_new(N, D, Nleaf);
kdtree_set_limits(kd, lo, hi);
}
printf("Building tree...\n");
kd = kdtree_build(kd, xyz, N, D, Nleaf, tt, buildopts);
hdr = qfits_header_default();
qfits_header_add(hdr, "AN_FILE", "HDTREE", "Henry Draper catalog kdtree", NULL);
BOILERPLATE_ADD_FITS_HEADERS(hdr);
fits_add_long_history(hdr, "This file was created by the following command-line:");
fits_add_args(hdr, args, argc);
if (kdtree_fits_write(kd, outfn, hdr)) {
ERROR("Failed to write kdtree");
exit(-1);
}
// Write mags as tag-along table.
{
fitstable_t* tag;
tag = fitstable_open_for_appending(outfn);
if (!tag) {
ERROR("Failed to open kd-tree file for appending");
exit(-1);
}
fitstable_add_write_column(tag, fitscolumn_float_type(), "MAG_VT", "");
fitstable_add_write_column(tag, fitscolumn_float_type(), "MAG_BT", "");
fitstable_add_write_column(tag, fitscolumn_float_type(), "MAG_HP", "");
if (fitstable_write_header(tag)) {
ERROR("Failed to write tag-along header");
exit(-1);
}
for (i=0; i<N; i++) {
fitstable_write_row(tag, fl_get(mag1s, i), fl_get(mag2s, i),
fl_get(mag3s, i));
}
if (fitstable_fix_header(tag)) {
ERROR("Failed to fix tag-along header");
exit(-1);
}
if (fitstable_close(tag)) {
ERROR("Failed to close tag-along data");
exit(-1);
}
}
fl_free(mag1s);
fl_free(mag2s);
fl_free(mag3s);
printf("Done.\n");
qfits_header_destroy(hdr);
free(xyz);
kdtree_free(kd);
free(tycstars);
return 0;
}
